Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02870 and MPMX20_02871 overlap by 14 nucleotides MPMX20_02871 and MPMX20_02872 overlap by 38 nucleotides MPMX20_02872 and MPMX20_02873 overlap by 1 nucleotides MPMX20_02873 and MPMX20_02874 overlap by 1 nucleotides
MPMX20_02870: MPMX20_02870 - hypothetical protein, at 3,023,825 to 3,026,302
_02870
MPMX20_02871: MPMX20_02871 - hypothetical protein, at 3,026,289 to 3,026,705
_02871
MPMX20_02872: MPMX20_02872 - hypothetical protein, at 3,026,668 to 3,027,138
_02872
MPMX20_02873: MPMX20_02873 - hypothetical protein, at 3,027,138 to 3,027,635
_02873
MPMX20_02874: MPMX20_02874 - hypothetical protein, at 3,027,635 to 3,030,565
_02874
Position (kb)
3026
3027 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3025.305 kb on + strand, within MPMX20_02870 at 3025.341 kb on + strand, within MPMX20_02870 at 3025.341 kb on + strand, within MPMX20_02870 at 3025.360 kb on - strand, within MPMX20_02870 at 3025.371 kb on - strand, within MPMX20_02870 at 3025.435 kb on + strand, within MPMX20_02870 at 3025.465 kb on - strand, within MPMX20_02870 at 3025.469 kb on + strand, within MPMX20_02870 at 3025.500 kb on - strand, within MPMX20_02870 at 3025.513 kb on - strand, within MPMX20_02870 at 3025.587 kb on - strand, within MPMX20_02870 at 3025.599 kb on - strand, within MPMX20_02870 at 3025.651 kb on + strand, within MPMX20_02870 at 3025.677 kb on - strand, within MPMX20_02870 at 3025.808 kb on + strand, within MPMX20_02870 at 3025.808 kb on + strand, within MPMX20_02870 at 3025.816 kb on - strand, within MPMX20_02870 at 3025.816 kb on - strand, within MPMX20_02870 at 3025.847 kb on + strand, within MPMX20_02870 at 3025.855 kb on - strand, within MPMX20_02870 at 3025.885 kb on + strand, within MPMX20_02870 at 3025.893 kb on - strand, within MPMX20_02870 at 3025.896 kb on + strand, within MPMX20_02870 at 3025.904 kb on - strand, within MPMX20_02870 at 3025.908 kb on + strand, within MPMX20_02870 at 3025.923 kb on - strand, within MPMX20_02870 at 3025.944 kb on + strand, within MPMX20_02870 at 3025.944 kb on + strand, within MPMX20_02870 at 3025.944 kb on + strand, within MPMX20_02870 at 3025.952 kb on - strand, within MPMX20_02870 at 3025.952 kb on - strand, within MPMX20_02870 at 3025.952 kb on - strand, within MPMX20_02870 at 3025.952 kb on - strand, within MPMX20_02870 at 3025.952 kb on - strand, within MPMX20_02870 at 3025.971 kb on - strand, within MPMX20_02870 at 3026.085 kb on + strand at 3026.085 kb on + strand at 3026.158 kb on + strand at 3026.158 kb on + strand at 3026.166 kb on - strand at 3026.177 kb on + strand at 3026.248 kb on - strand at 3026.250 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.286 kb on + strand at 3026.373 kb on - strand, within MPMX20_02871 at 3026.408 kb on - strand, within MPMX20_02871 at 3026.419 kb on - strand, within MPMX20_02871 at 3026.466 kb on - strand, within MPMX20_02871 at 3026.502 kb on - strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.563 kb on - strand, within MPMX20_02871 at 3026.575 kb on + strand, within MPMX20_02871 at 3026.635 kb on + strand, within MPMX20_02871 at 3026.637 kb on - strand, within MPMX20_02871 at 3026.656 kb on - strand, within MPMX20_02871 at 3026.666 kb on + strand at 3026.682 kb on - strand at 3026.699 kb on + strand at 3026.717 kb on + strand, within MPMX20_02872 at 3026.764 kb on + strand, within MPMX20_02872 at 3026.775 kb on + strand, within MPMX20_02872 at 3026.822 kb on - strand, within MPMX20_02872 at 3026.869 kb on + strand, within MPMX20_02872 at 3026.959 kb on + strand, within MPMX20_02872 at 3026.988 kb on + strand, within MPMX20_02872 at 3026.993 kb on + strand, within MPMX20_02872 at 3026.993 kb on + strand, within MPMX20_02872 at 3027.001 kb on - strand, within MPMX20_02872 at 3027.001 kb on - strand, within MPMX20_02872 at 3027.075 kb on + strand, within MPMX20_02872 at 3027.083 kb on - strand, within MPMX20_02872 at 3027.091 kb on - strand, within MPMX20_02872 at 3027.116 kb on - strand at 3027.123 kb on + strand at 3027.123 kb on + strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.153 kb on - strand at 3027.242 kb on + strand, within MPMX20_02873 at 3027.297 kb on + strand, within MPMX20_02873 at 3027.329 kb on - strand, within MPMX20_02873 at 3027.333 kb on + strand, within MPMX20_02873 at 3027.341 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.430 kb on - strand, within MPMX20_02873 at 3027.443 kb on + strand, within MPMX20_02873 at 3027.475 kb on - strand, within MPMX20_02873 at 3027.497 kb on + strand, within MPMX20_02873 at 3027.561 kb on - strand, within MPMX20_02873 at 3027.622 kb on - strand at 3027.629 kb on - strand at 3027.633 kb on + strand at 3027.654 kb on - strand at 3027.654 kb on - strand at 3027.683 kb on + strand at 3027.702 kb on + strand at 3027.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,025,305 + MPMX20_02870 0.60 -1.1 3,025,341 + MPMX20_02870 0.61 -1.5 3,025,341 + MPMX20_02870 0.61 -0.1 3,025,360 - MPMX20_02870 0.62 -1.5 3,025,371 - MPMX20_02870 0.62 -0.3 3,025,435 + MPMX20_02870 0.65 -2.1 3,025,465 - MPMX20_02870 0.66 -0.6 3,025,469 + MPMX20_02870 0.66 -0.9 3,025,500 - MPMX20_02870 0.68 -0.6 3,025,513 - MPMX20_02870 0.68 -0.9 3,025,587 - MPMX20_02870 0.71 -0.9 3,025,599 - MPMX20_02870 0.72 -1.0 3,025,651 + MPMX20_02870 0.74 -0.8 3,025,677 - MPMX20_02870 0.75 -2.0 3,025,808 + MPMX20_02870 0.80 -1.7 3,025,808 + MPMX20_02870 0.80 -0.8 3,025,816 - MPMX20_02870 0.80 -0.8 3,025,816 - MPMX20_02870 0.80 -0.9 3,025,847 + MPMX20_02870 0.82 -1.3 3,025,855 - MPMX20_02870 0.82 -0.1 3,025,885 + MPMX20_02870 0.83 -0.6 3,025,893 - MPMX20_02870 0.83 -1.6 3,025,896 + MPMX20_02870 0.84 -1.1 3,025,904 - MPMX20_02870 0.84 -2.8 3,025,908 + MPMX20_02870 0.84 -1.0 3,025,923 - MPMX20_02870 0.85 -1.4 3,025,944 + MPMX20_02870 0.86 -1.0 3,025,944 + MPMX20_02870 0.86 -1.6 3,025,944 + MPMX20_02870 0.86 -0.7 3,025,952 - MPMX20_02870 0.86 -1.6 3,025,952 - MPMX20_02870 0.86 +0.0 3,025,952 - MPMX20_02870 0.86 -0.9 3,025,952 - MPMX20_02870 0.86 -1.3 3,025,952 - MPMX20_02870 0.86 +0.0 3,025,971 - MPMX20_02870 0.87 -0.7 3,026,085 + -1.3 3,026,085 + -2.3 3,026,158 + -1.6 3,026,158 + -0.5 3,026,166 - -1.0 3,026,177 + -0.8 3,026,248 - -0.9 3,026,250 + -0.6 3,026,260 + +0.1 3,026,260 + -1.7 3,026,260 + -0.6 3,026,260 + -1.1 3,026,260 + -1.1 3,026,260 + -1.5 3,026,260 + +0.4 3,026,260 + -1.5 3,026,260 + -0.8 3,026,260 + -0.2 3,026,260 + -1.1 3,026,268 - -0.8 3,026,268 - -0.5 3,026,268 - -0.8 3,026,268 - -1.3 3,026,268 - -1.5 3,026,268 - -0.6 3,026,268 - -1.2 3,026,268 - -0.7 3,026,268 - -1.0 3,026,268 - -0.8 3,026,286 + -0.0 3,026,373 - MPMX20_02871 0.20 -1.2 3,026,408 - MPMX20_02871 0.29 -0.9 3,026,419 - MPMX20_02871 0.31 -1.3 3,026,466 - MPMX20_02871 0.42 -0.6 3,026,502 - MPMX20_02871 0.51 -1.9 3,026,555 + MPMX20_02871 0.64 -0.5 3,026,555 + MPMX20_02871 0.64 -1.0 3,026,555 + MPMX20_02871 0.64 -0.1 3,026,555 + MPMX20_02871 0.64 -0.7 3,026,563 - MPMX20_02871 0.66 -1.8 3,026,575 + MPMX20_02871 0.69 -1.8 3,026,635 + MPMX20_02871 0.83 -1.3 3,026,637 - MPMX20_02871 0.83 -2.3 3,026,656 - MPMX20_02871 0.88 -1.1 3,026,666 + -0.7 3,026,682 - -0.7 3,026,699 + -1.7 3,026,717 + MPMX20_02872 0.10 -0.9 3,026,764 + MPMX20_02872 0.20 -0.8 3,026,775 + MPMX20_02872 0.23 -0.6 3,026,822 - MPMX20_02872 0.33 -1.0 3,026,869 + MPMX20_02872 0.43 -1.2 3,026,959 + MPMX20_02872 0.62 +0.1 3,026,988 + MPMX20_02872 0.68 -0.5 3,026,993 + MPMX20_02872 0.69 -0.9 3,026,993 + MPMX20_02872 0.69 +1.4 3,027,001 - MPMX20_02872 0.71 -0.8 3,027,001 - MPMX20_02872 0.71 -1.0 3,027,075 + MPMX20_02872 0.86 -1.4 3,027,083 - MPMX20_02872 0.88 -1.0 3,027,091 - MPMX20_02872 0.90 +0.2 3,027,116 - -0.6 3,027,123 + -0.5 3,027,123 + -1.0 3,027,131 - -0.9 3,027,131 - -0.4 3,027,131 - -1.0 3,027,131 - -2.5 3,027,131 - -0.4 3,027,131 - -1.2 3,027,131 - -0.2 3,027,153 - -1.2 3,027,242 + MPMX20_02873 0.21 -1.3 3,027,297 + MPMX20_02873 0.32 -1.0 3,027,329 - MPMX20_02873 0.38 -0.9 3,027,333 + MPMX20_02873 0.39 -0.2 3,027,341 - MPMX20_02873 0.41 -0.9 3,027,373 - MPMX20_02873 0.47 -1.3 3,027,373 - MPMX20_02873 0.47 -0.9 3,027,373 - MPMX20_02873 0.47 -1.0 3,027,373 - MPMX20_02873 0.47 -0.9 3,027,430 - MPMX20_02873 0.59 -0.7 3,027,443 + MPMX20_02873 0.61 -1.1 3,027,475 - MPMX20_02873 0.68 -0.8 3,027,497 + MPMX20_02873 0.72 -0.5 3,027,561 - MPMX20_02873 0.85 -1.9 3,027,622 - -0.4 3,027,629 - -0.5 3,027,633 + -1.2 3,027,654 - -0.9 3,027,654 - -0.3 3,027,683 + +0.0 3,027,702 + -1.3 3,027,702 + -0.5
Or see this region's nucleotide sequence