Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02871

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02870 and MPMX20_02871 overlap by 14 nucleotidesMPMX20_02871 and MPMX20_02872 overlap by 38 nucleotidesMPMX20_02872 and MPMX20_02873 overlap by 1 nucleotidesMPMX20_02873 and MPMX20_02874 overlap by 1 nucleotides MPMX20_02870: MPMX20_02870 - hypothetical protein, at 3,023,825 to 3,026,302 _02870 MPMX20_02871: MPMX20_02871 - hypothetical protein, at 3,026,289 to 3,026,705 _02871 MPMX20_02872: MPMX20_02872 - hypothetical protein, at 3,026,668 to 3,027,138 _02872 MPMX20_02873: MPMX20_02873 - hypothetical protein, at 3,027,138 to 3,027,635 _02873 MPMX20_02874: MPMX20_02874 - hypothetical protein, at 3,027,635 to 3,030,565 _02874 Position (kb) 3026 3027Strain fitness (log2 ratio) -3 -2 -1 0 1at 3025.305 kb on + strand, within MPMX20_02870at 3025.341 kb on + strand, within MPMX20_02870at 3025.341 kb on + strand, within MPMX20_02870at 3025.360 kb on - strand, within MPMX20_02870at 3025.371 kb on - strand, within MPMX20_02870at 3025.435 kb on + strand, within MPMX20_02870at 3025.465 kb on - strand, within MPMX20_02870at 3025.469 kb on + strand, within MPMX20_02870at 3025.500 kb on - strand, within MPMX20_02870at 3025.513 kb on - strand, within MPMX20_02870at 3025.587 kb on - strand, within MPMX20_02870at 3025.599 kb on - strand, within MPMX20_02870at 3025.651 kb on + strand, within MPMX20_02870at 3025.677 kb on - strand, within MPMX20_02870at 3025.808 kb on + strand, within MPMX20_02870at 3025.808 kb on + strand, within MPMX20_02870at 3025.816 kb on - strand, within MPMX20_02870at 3025.816 kb on - strand, within MPMX20_02870at 3025.847 kb on + strand, within MPMX20_02870at 3025.855 kb on - strand, within MPMX20_02870at 3025.885 kb on + strand, within MPMX20_02870at 3025.893 kb on - strand, within MPMX20_02870at 3025.896 kb on + strand, within MPMX20_02870at 3025.904 kb on - strand, within MPMX20_02870at 3025.908 kb on + strand, within MPMX20_02870at 3025.923 kb on - strand, within MPMX20_02870at 3025.944 kb on + strand, within MPMX20_02870at 3025.944 kb on + strand, within MPMX20_02870at 3025.944 kb on + strand, within MPMX20_02870at 3025.952 kb on - strand, within MPMX20_02870at 3025.952 kb on - strand, within MPMX20_02870at 3025.952 kb on - strand, within MPMX20_02870at 3025.952 kb on - strand, within MPMX20_02870at 3025.952 kb on - strand, within MPMX20_02870at 3025.971 kb on - strand, within MPMX20_02870at 3026.085 kb on + strandat 3026.085 kb on + strandat 3026.158 kb on + strandat 3026.158 kb on + strandat 3026.166 kb on - strandat 3026.177 kb on + strandat 3026.248 kb on - strandat 3026.250 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.260 kb on + strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.268 kb on - strandat 3026.286 kb on + strandat 3026.373 kb on - strand, within MPMX20_02871at 3026.408 kb on - strand, within MPMX20_02871at 3026.419 kb on - strand, within MPMX20_02871at 3026.466 kb on - strand, within MPMX20_02871at 3026.502 kb on - strand, within MPMX20_02871at 3026.555 kb on + strand, within MPMX20_02871at 3026.555 kb on + strand, within MPMX20_02871at 3026.555 kb on + strand, within MPMX20_02871at 3026.555 kb on + strand, within MPMX20_02871at 3026.563 kb on - strand, within MPMX20_02871at 3026.575 kb on + strand, within MPMX20_02871at 3026.635 kb on + strand, within MPMX20_02871at 3026.637 kb on - strand, within MPMX20_02871at 3026.656 kb on - strand, within MPMX20_02871at 3026.666 kb on + strandat 3026.682 kb on - strandat 3026.699 kb on + strandat 3026.717 kb on + strand, within MPMX20_02872at 3026.764 kb on + strand, within MPMX20_02872at 3026.775 kb on + strand, within MPMX20_02872at 3026.822 kb on - strand, within MPMX20_02872at 3026.869 kb on + strand, within MPMX20_02872at 3026.959 kb on + strand, within MPMX20_02872at 3026.988 kb on + strand, within MPMX20_02872at 3026.993 kb on + strand, within MPMX20_02872at 3026.993 kb on + strand, within MPMX20_02872at 3027.001 kb on - strand, within MPMX20_02872at 3027.001 kb on - strand, within MPMX20_02872at 3027.075 kb on + strand, within MPMX20_02872at 3027.083 kb on - strand, within MPMX20_02872at 3027.091 kb on - strand, within MPMX20_02872at 3027.116 kb on - strandat 3027.123 kb on + strandat 3027.123 kb on + strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.131 kb on - strandat 3027.153 kb on - strandat 3027.242 kb on + strand, within MPMX20_02873at 3027.297 kb on + strand, within MPMX20_02873at 3027.329 kb on - strand, within MPMX20_02873at 3027.333 kb on + strand, within MPMX20_02873at 3027.341 kb on - strand, within MPMX20_02873at 3027.373 kb on - strand, within MPMX20_02873at 3027.373 kb on - strand, within MPMX20_02873at 3027.373 kb on - strand, within MPMX20_02873at 3027.373 kb on - strand, within MPMX20_02873at 3027.430 kb on - strand, within MPMX20_02873at 3027.443 kb on + strand, within MPMX20_02873at 3027.475 kb on - strand, within MPMX20_02873at 3027.497 kb on + strand, within MPMX20_02873at 3027.561 kb on - strand, within MPMX20_02873at 3027.622 kb on - strandat 3027.629 kb on - strandat 3027.633 kb on + strandat 3027.654 kb on - strandat 3027.654 kb on - strandat 3027.683 kb on + strandat 3027.702 kb on + strandat 3027.702 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
3,025,305 + MPMX20_02870 0.60 -1.1
3,025,341 + MPMX20_02870 0.61 -1.5
3,025,341 + MPMX20_02870 0.61 -0.1
3,025,360 - MPMX20_02870 0.62 -1.5
3,025,371 - MPMX20_02870 0.62 -0.3
3,025,435 + MPMX20_02870 0.65 -2.1
3,025,465 - MPMX20_02870 0.66 -0.6
3,025,469 + MPMX20_02870 0.66 -0.9
3,025,500 - MPMX20_02870 0.68 -0.6
3,025,513 - MPMX20_02870 0.68 -0.9
3,025,587 - MPMX20_02870 0.71 -0.9
3,025,599 - MPMX20_02870 0.72 -1.0
3,025,651 + MPMX20_02870 0.74 -0.8
3,025,677 - MPMX20_02870 0.75 -2.0
3,025,808 + MPMX20_02870 0.80 -1.7
3,025,808 + MPMX20_02870 0.80 -0.8
3,025,816 - MPMX20_02870 0.80 -0.8
3,025,816 - MPMX20_02870 0.80 -0.9
3,025,847 + MPMX20_02870 0.82 -1.3
3,025,855 - MPMX20_02870 0.82 -0.1
3,025,885 + MPMX20_02870 0.83 -0.6
3,025,893 - MPMX20_02870 0.83 -1.6
3,025,896 + MPMX20_02870 0.84 -1.1
3,025,904 - MPMX20_02870 0.84 -2.8
3,025,908 + MPMX20_02870 0.84 -1.0
3,025,923 - MPMX20_02870 0.85 -1.4
3,025,944 + MPMX20_02870 0.86 -1.0
3,025,944 + MPMX20_02870 0.86 -1.6
3,025,944 + MPMX20_02870 0.86 -0.7
3,025,952 - MPMX20_02870 0.86 -1.6
3,025,952 - MPMX20_02870 0.86 +0.0
3,025,952 - MPMX20_02870 0.86 -0.9
3,025,952 - MPMX20_02870 0.86 -1.3
3,025,952 - MPMX20_02870 0.86 +0.0
3,025,971 - MPMX20_02870 0.87 -0.7
3,026,085 + -1.3
3,026,085 + -2.3
3,026,158 + -1.6
3,026,158 + -0.5
3,026,166 - -1.0
3,026,177 + -0.8
3,026,248 - -0.9
3,026,250 + -0.6
3,026,260 + +0.1
3,026,260 + -1.7
3,026,260 + -0.6
3,026,260 + -1.1
3,026,260 + -1.1
3,026,260 + -1.5
3,026,260 + +0.4
3,026,260 + -1.5
3,026,260 + -0.8
3,026,260 + -0.2
3,026,260 + -1.1
3,026,268 - -0.8
3,026,268 - -0.5
3,026,268 - -0.8
3,026,268 - -1.3
3,026,268 - -1.5
3,026,268 - -0.6
3,026,268 - -1.2
3,026,268 - -0.7
3,026,268 - -1.0
3,026,268 - -0.8
3,026,286 + -0.0
3,026,373 - MPMX20_02871 0.20 -1.2
3,026,408 - MPMX20_02871 0.29 -0.9
3,026,419 - MPMX20_02871 0.31 -1.3
3,026,466 - MPMX20_02871 0.42 -0.6
3,026,502 - MPMX20_02871 0.51 -1.9
3,026,555 + MPMX20_02871 0.64 -0.5
3,026,555 + MPMX20_02871 0.64 -1.0
3,026,555 + MPMX20_02871 0.64 -0.1
3,026,555 + MPMX20_02871 0.64 -0.7
3,026,563 - MPMX20_02871 0.66 -1.8
3,026,575 + MPMX20_02871 0.69 -1.8
3,026,635 + MPMX20_02871 0.83 -1.3
3,026,637 - MPMX20_02871 0.83 -2.3
3,026,656 - MPMX20_02871 0.88 -1.1
3,026,666 + -0.7
3,026,682 - -0.7
3,026,699 + -1.7
3,026,717 + MPMX20_02872 0.10 -0.9
3,026,764 + MPMX20_02872 0.20 -0.8
3,026,775 + MPMX20_02872 0.23 -0.6
3,026,822 - MPMX20_02872 0.33 -1.0
3,026,869 + MPMX20_02872 0.43 -1.2
3,026,959 + MPMX20_02872 0.62 +0.1
3,026,988 + MPMX20_02872 0.68 -0.5
3,026,993 + MPMX20_02872 0.69 -0.9
3,026,993 + MPMX20_02872 0.69 +1.4
3,027,001 - MPMX20_02872 0.71 -0.8
3,027,001 - MPMX20_02872 0.71 -1.0
3,027,075 + MPMX20_02872 0.86 -1.4
3,027,083 - MPMX20_02872 0.88 -1.0
3,027,091 - MPMX20_02872 0.90 +0.2
3,027,116 - -0.6
3,027,123 + -0.5
3,027,123 + -1.0
3,027,131 - -0.9
3,027,131 - -0.4
3,027,131 - -1.0
3,027,131 - -2.5
3,027,131 - -0.4
3,027,131 - -1.2
3,027,131 - -0.2
3,027,153 - -1.2
3,027,242 + MPMX20_02873 0.21 -1.3
3,027,297 + MPMX20_02873 0.32 -1.0
3,027,329 - MPMX20_02873 0.38 -0.9
3,027,333 + MPMX20_02873 0.39 -0.2
3,027,341 - MPMX20_02873 0.41 -0.9
3,027,373 - MPMX20_02873 0.47 -1.3
3,027,373 - MPMX20_02873 0.47 -0.9
3,027,373 - MPMX20_02873 0.47 -1.0
3,027,373 - MPMX20_02873 0.47 -0.9
3,027,430 - MPMX20_02873 0.59 -0.7
3,027,443 + MPMX20_02873 0.61 -1.1
3,027,475 - MPMX20_02873 0.68 -0.8
3,027,497 + MPMX20_02873 0.72 -0.5
3,027,561 - MPMX20_02873 0.85 -1.9
3,027,622 - -0.4
3,027,629 - -0.5
3,027,633 + -1.2
3,027,654 - -0.9
3,027,654 - -0.3
3,027,683 + +0.0
3,027,702 + -1.3
3,027,702 + -0.5

Or see this region's nucleotide sequence