Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02858 and MPMX20_02859 are separated by 64 nucleotides MPMX20_02859 and MPMX20_02860 are separated by 231 nucleotides MPMX20_02860 and MPMX20_02861 overlap by 1 nucleotides MPMX20_02861 and MPMX20_02862 are separated by 150 nucleotides
MPMX20_02858: MPMX20_02858 - Cytoplasmic alpha-amylase, at 3,014,080 to 3,015,567
_02858
MPMX20_02859: MPMX20_02859 - hypothetical protein, at 3,015,632 to 3,016,045
_02859
MPMX20_02860: MPMX20_02860 - hypothetical protein, at 3,016,277 to 3,016,600
_02860
MPMX20_02861: MPMX20_02861 - hypothetical protein, at 3,016,600 to 3,016,839
_02861
MPMX20_02862: MPMX20_02862 - hypothetical protein, at 3,016,990 to 3,017,766
_02862
Position (kb)
3016
3017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3015.281 kb on + strand, within MPMX20_02858 at 3015.323 kb on - strand, within MPMX20_02858 at 3015.385 kb on - strand, within MPMX20_02858 at 3015.519 kb on - strand at 3015.519 kb on - strand at 3015.547 kb on - strand at 3015.624 kb on + strand at 3015.667 kb on + strand at 3015.680 kb on + strand, within MPMX20_02859 at 3015.680 kb on + strand, within MPMX20_02859 at 3015.699 kb on + strand, within MPMX20_02859 at 3015.707 kb on - strand, within MPMX20_02859 at 3015.733 kb on - strand, within MPMX20_02859 at 3015.738 kb on - strand, within MPMX20_02859 at 3015.781 kb on + strand, within MPMX20_02859 at 3015.843 kb on + strand, within MPMX20_02859 at 3015.846 kb on - strand, within MPMX20_02859 at 3015.848 kb on + strand, within MPMX20_02859 at 3015.851 kb on - strand, within MPMX20_02859 at 3015.892 kb on + strand, within MPMX20_02859 at 3015.892 kb on + strand, within MPMX20_02859 at 3015.900 kb on - strand, within MPMX20_02859 at 3015.900 kb on - strand, within MPMX20_02859 at 3015.921 kb on + strand, within MPMX20_02859 at 3015.973 kb on + strand, within MPMX20_02859 at 3016.118 kb on + strand at 3016.171 kb on - strand at 3016.237 kb on + strand at 3016.237 kb on + strand at 3016.237 kb on + strand at 3016.245 kb on - strand at 3016.266 kb on + strand at 3016.270 kb on + strand at 3016.334 kb on + strand, within MPMX20_02860 at 3016.342 kb on + strand, within MPMX20_02860 at 3016.350 kb on - strand, within MPMX20_02860 at 3016.351 kb on + strand, within MPMX20_02860 at 3016.361 kb on + strand, within MPMX20_02860 at 3016.412 kb on - strand, within MPMX20_02860 at 3016.428 kb on - strand, within MPMX20_02860 at 3016.433 kb on - strand, within MPMX20_02860 at 3016.450 kb on + strand, within MPMX20_02860 at 3016.458 kb on - strand, within MPMX20_02860 at 3016.520 kb on + strand, within MPMX20_02860 at 3016.520 kb on + strand, within MPMX20_02860 at 3016.520 kb on + strand, within MPMX20_02860 at 3016.520 kb on + strand, within MPMX20_02860 at 3016.559 kb on - strand, within MPMX20_02860 at 3016.628 kb on + strand, within MPMX20_02861 at 3016.628 kb on + strand, within MPMX20_02861 at 3016.636 kb on - strand, within MPMX20_02861 at 3016.650 kb on + strand, within MPMX20_02861 at 3016.657 kb on + strand, within MPMX20_02861 at 3016.660 kb on - strand, within MPMX20_02861 at 3016.689 kb on + strand, within MPMX20_02861 at 3016.691 kb on + strand, within MPMX20_02861 at 3016.691 kb on + strand, within MPMX20_02861 at 3016.691 kb on + strand, within MPMX20_02861 at 3016.691 kb on + strand, within MPMX20_02861 at 3016.691 kb on + strand, within MPMX20_02861 at 3016.697 kb on - strand, within MPMX20_02861 at 3016.699 kb on - strand, within MPMX20_02861 at 3016.699 kb on - strand, within MPMX20_02861 at 3016.699 kb on - strand, within MPMX20_02861 at 3016.715 kb on + strand, within MPMX20_02861 at 3016.772 kb on + strand, within MPMX20_02861 at 3016.778 kb on + strand, within MPMX20_02861 at 3016.786 kb on + strand, within MPMX20_02861 at 3016.786 kb on - strand, within MPMX20_02861 at 3016.786 kb on - strand, within MPMX20_02861 at 3016.786 kb on - strand, within MPMX20_02861 at 3016.792 kb on - strand, within MPMX20_02861 at 3016.824 kb on - strand at 3016.979 kb on - strand at 3017.007 kb on + strand at 3017.007 kb on + strand at 3017.007 kb on + strand at 3017.007 kb on + strand at 3017.015 kb on - strand at 3017.015 kb on - strand at 3017.017 kb on + strand at 3017.050 kb on - strand at 3017.050 kb on - strand at 3017.050 kb on - strand at 3017.050 kb on - strand at 3017.187 kb on - strand, within MPMX20_02862 at 3017.292 kb on - strand, within MPMX20_02862 at 3017.307 kb on + strand, within MPMX20_02862 at 3017.307 kb on + strand, within MPMX20_02862 at 3017.307 kb on + strand, within MPMX20_02862 at 3017.315 kb on - strand, within MPMX20_02862 at 3017.341 kb on - strand, within MPMX20_02862 at 3017.368 kb on + strand, within MPMX20_02862 at 3017.432 kb on + strand, within MPMX20_02862 at 3017.437 kb on + strand, within MPMX20_02862 at 3017.476 kb on + strand, within MPMX20_02862 at 3017.476 kb on + strand, within MPMX20_02862 at 3017.486 kb on + strand, within MPMX20_02862 at 3017.493 kb on + strand, within MPMX20_02862 at 3017.501 kb on - strand, within MPMX20_02862 at 3017.530 kb on - strand, within MPMX20_02862 at 3017.532 kb on + strand, within MPMX20_02862 at 3017.538 kb on - strand, within MPMX20_02862 at 3017.540 kb on - strand, within MPMX20_02862 at 3017.540 kb on - strand, within MPMX20_02862 at 3017.559 kb on + strand, within MPMX20_02862 at 3017.559 kb on + strand, within MPMX20_02862 at 3017.559 kb on + strand, within MPMX20_02862 at 3017.559 kb on + strand, within MPMX20_02862 at 3017.567 kb on - strand, within MPMX20_02862 at 3017.567 kb on - strand, within MPMX20_02862 at 3017.567 kb on - strand, within MPMX20_02862
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,015,281 + MPMX20_02858 0.81 -0.8 3,015,323 - MPMX20_02858 0.84 +0.2 3,015,385 - MPMX20_02858 0.88 -0.4 3,015,519 - -0.7 3,015,519 - +1.2 3,015,547 - -1.7 3,015,624 + -1.0 3,015,667 + +0.9 3,015,680 + MPMX20_02859 0.12 -0.6 3,015,680 + MPMX20_02859 0.12 -1.4 3,015,699 + MPMX20_02859 0.16 -0.2 3,015,707 - MPMX20_02859 0.18 +0.9 3,015,733 - MPMX20_02859 0.24 +1.0 3,015,738 - MPMX20_02859 0.26 +0.2 3,015,781 + MPMX20_02859 0.36 -0.6 3,015,843 + MPMX20_02859 0.51 +0.6 3,015,846 - MPMX20_02859 0.52 -0.0 3,015,848 + MPMX20_02859 0.52 -0.0 3,015,851 - MPMX20_02859 0.53 +0.4 3,015,892 + MPMX20_02859 0.63 +0.0 3,015,892 + MPMX20_02859 0.63 +0.4 3,015,900 - MPMX20_02859 0.65 +0.2 3,015,900 - MPMX20_02859 0.65 -0.4 3,015,921 + MPMX20_02859 0.70 +0.2 3,015,973 + MPMX20_02859 0.82 -0.6 3,016,118 + -0.5 3,016,171 - -0.9 3,016,237 + -0.0 3,016,237 + -0.1 3,016,237 + -1.3 3,016,245 - -1.2 3,016,266 + -1.3 3,016,270 + -0.9 3,016,334 + MPMX20_02860 0.18 -0.9 3,016,342 + MPMX20_02860 0.20 -1.3 3,016,350 - MPMX20_02860 0.23 -0.5 3,016,351 + MPMX20_02860 0.23 -1.1 3,016,361 + MPMX20_02860 0.26 -1.6 3,016,412 - MPMX20_02860 0.42 -1.7 3,016,428 - MPMX20_02860 0.47 -1.1 3,016,433 - MPMX20_02860 0.48 -0.9 3,016,450 + MPMX20_02860 0.53 -1.1 3,016,458 - MPMX20_02860 0.56 -1.3 3,016,520 + MPMX20_02860 0.75 -1.0 3,016,520 + MPMX20_02860 0.75 -1.1 3,016,520 + MPMX20_02860 0.75 -1.2 3,016,520 + MPMX20_02860 0.75 -1.4 3,016,559 - MPMX20_02860 0.87 -1.3 3,016,628 + MPMX20_02861 0.12 -0.7 3,016,628 + MPMX20_02861 0.12 -0.9 3,016,636 - MPMX20_02861 0.15 -1.0 3,016,650 + MPMX20_02861 0.21 -1.1 3,016,657 + MPMX20_02861 0.24 -1.2 3,016,660 - MPMX20_02861 0.25 -1.2 3,016,689 + MPMX20_02861 0.37 -0.6 3,016,691 + MPMX20_02861 0.38 -0.4 3,016,691 + MPMX20_02861 0.38 -1.1 3,016,691 + MPMX20_02861 0.38 -1.3 3,016,691 + MPMX20_02861 0.38 -0.3 3,016,691 + MPMX20_02861 0.38 -1.2 3,016,697 - MPMX20_02861 0.40 -1.3 3,016,699 - MPMX20_02861 0.41 -0.5 3,016,699 - MPMX20_02861 0.41 -0.0 3,016,699 - MPMX20_02861 0.41 -1.3 3,016,715 + MPMX20_02861 0.48 -0.5 3,016,772 + MPMX20_02861 0.72 -0.8 3,016,778 + MPMX20_02861 0.74 -0.0 3,016,786 + MPMX20_02861 0.78 -1.6 3,016,786 - MPMX20_02861 0.78 -1.3 3,016,786 - MPMX20_02861 0.78 -1.0 3,016,786 - MPMX20_02861 0.78 -1.9 3,016,792 - MPMX20_02861 0.80 +0.2 3,016,824 - -1.3 3,016,979 - -1.6 3,017,007 + -1.5 3,017,007 + -1.2 3,017,007 + -1.1 3,017,007 + -1.9 3,017,015 - -1.4 3,017,015 - -1.1 3,017,017 + -1.9 3,017,050 - -1.1 3,017,050 - -1.0 3,017,050 - -0.4 3,017,050 - -0.8 3,017,187 - MPMX20_02862 0.25 -1.1 3,017,292 - MPMX20_02862 0.39 -1.2 3,017,307 + MPMX20_02862 0.41 -1.4 3,017,307 + MPMX20_02862 0.41 -1.2 3,017,307 + MPMX20_02862 0.41 -1.5 3,017,315 - MPMX20_02862 0.42 -1.3 3,017,341 - MPMX20_02862 0.45 -1.6 3,017,368 + MPMX20_02862 0.49 -1.5 3,017,432 + MPMX20_02862 0.57 -1.3 3,017,437 + MPMX20_02862 0.58 -1.7 3,017,476 + MPMX20_02862 0.63 +1.9 3,017,476 + MPMX20_02862 0.63 -2.6 3,017,486 + MPMX20_02862 0.64 -2.8 3,017,493 + MPMX20_02862 0.65 -0.9 3,017,501 - MPMX20_02862 0.66 -0.9 3,017,530 - MPMX20_02862 0.69 -1.1 3,017,532 + MPMX20_02862 0.70 -1.5 3,017,538 - MPMX20_02862 0.71 -0.7 3,017,540 - MPMX20_02862 0.71 -1.4 3,017,540 - MPMX20_02862 0.71 -1.5 3,017,559 + MPMX20_02862 0.73 -1.4 3,017,559 + MPMX20_02862 0.73 -1.3 3,017,559 + MPMX20_02862 0.73 -1.3 3,017,559 + MPMX20_02862 0.73 -1.6 3,017,567 - MPMX20_02862 0.74 -1.3 3,017,567 - MPMX20_02862 0.74 -1.1 3,017,567 - MPMX20_02862 0.74 -1.1
Or see this region's nucleotide sequence