Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02860

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02858 and MPMX20_02859 are separated by 64 nucleotidesMPMX20_02859 and MPMX20_02860 are separated by 231 nucleotidesMPMX20_02860 and MPMX20_02861 overlap by 1 nucleotidesMPMX20_02861 and MPMX20_02862 are separated by 150 nucleotides MPMX20_02858: MPMX20_02858 - Cytoplasmic alpha-amylase, at 3,014,080 to 3,015,567 _02858 MPMX20_02859: MPMX20_02859 - hypothetical protein, at 3,015,632 to 3,016,045 _02859 MPMX20_02860: MPMX20_02860 - hypothetical protein, at 3,016,277 to 3,016,600 _02860 MPMX20_02861: MPMX20_02861 - hypothetical protein, at 3,016,600 to 3,016,839 _02861 MPMX20_02862: MPMX20_02862 - hypothetical protein, at 3,016,990 to 3,017,766 _02862 Position (kb) 3016 3017Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3015.281 kb on + strand, within MPMX20_02858at 3015.323 kb on - strand, within MPMX20_02858at 3015.385 kb on - strand, within MPMX20_02858at 3015.519 kb on - strandat 3015.519 kb on - strandat 3015.547 kb on - strandat 3015.624 kb on + strandat 3015.667 kb on + strandat 3015.680 kb on + strand, within MPMX20_02859at 3015.680 kb on + strand, within MPMX20_02859at 3015.699 kb on + strand, within MPMX20_02859at 3015.707 kb on - strand, within MPMX20_02859at 3015.733 kb on - strand, within MPMX20_02859at 3015.738 kb on - strand, within MPMX20_02859at 3015.781 kb on + strand, within MPMX20_02859at 3015.843 kb on + strand, within MPMX20_02859at 3015.846 kb on - strand, within MPMX20_02859at 3015.848 kb on + strand, within MPMX20_02859at 3015.851 kb on - strand, within MPMX20_02859at 3015.892 kb on + strand, within MPMX20_02859at 3015.892 kb on + strand, within MPMX20_02859at 3015.900 kb on - strand, within MPMX20_02859at 3015.900 kb on - strand, within MPMX20_02859at 3015.921 kb on + strand, within MPMX20_02859at 3015.973 kb on + strand, within MPMX20_02859at 3016.118 kb on + strandat 3016.171 kb on - strandat 3016.237 kb on + strandat 3016.237 kb on + strandat 3016.237 kb on + strandat 3016.245 kb on - strandat 3016.266 kb on + strandat 3016.270 kb on + strandat 3016.334 kb on + strand, within MPMX20_02860at 3016.342 kb on + strand, within MPMX20_02860at 3016.350 kb on - strand, within MPMX20_02860at 3016.351 kb on + strand, within MPMX20_02860at 3016.361 kb on + strand, within MPMX20_02860at 3016.412 kb on - strand, within MPMX20_02860at 3016.428 kb on - strand, within MPMX20_02860at 3016.433 kb on - strand, within MPMX20_02860at 3016.450 kb on + strand, within MPMX20_02860at 3016.458 kb on - strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.559 kb on - strand, within MPMX20_02860at 3016.628 kb on + strand, within MPMX20_02861at 3016.628 kb on + strand, within MPMX20_02861at 3016.636 kb on - strand, within MPMX20_02861at 3016.650 kb on + strand, within MPMX20_02861at 3016.657 kb on + strand, within MPMX20_02861at 3016.660 kb on - strand, within MPMX20_02861at 3016.689 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.697 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.715 kb on + strand, within MPMX20_02861at 3016.772 kb on + strand, within MPMX20_02861at 3016.778 kb on + strand, within MPMX20_02861at 3016.786 kb on + strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.792 kb on - strand, within MPMX20_02861at 3016.824 kb on - strandat 3016.979 kb on - strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.015 kb on - strandat 3017.015 kb on - strandat 3017.017 kb on + strandat 3017.050 kb on - strandat 3017.050 kb on - strandat 3017.050 kb on - strandat 3017.050 kb on - strandat 3017.187 kb on - strand, within MPMX20_02862at 3017.292 kb on - strand, within MPMX20_02862at 3017.307 kb on + strand, within MPMX20_02862at 3017.307 kb on + strand, within MPMX20_02862at 3017.307 kb on + strand, within MPMX20_02862at 3017.315 kb on - strand, within MPMX20_02862at 3017.341 kb on - strand, within MPMX20_02862at 3017.368 kb on + strand, within MPMX20_02862at 3017.432 kb on + strand, within MPMX20_02862at 3017.437 kb on + strand, within MPMX20_02862at 3017.476 kb on + strand, within MPMX20_02862at 3017.476 kb on + strand, within MPMX20_02862at 3017.486 kb on + strand, within MPMX20_02862at 3017.493 kb on + strand, within MPMX20_02862at 3017.501 kb on - strand, within MPMX20_02862at 3017.530 kb on - strand, within MPMX20_02862at 3017.532 kb on + strand, within MPMX20_02862at 3017.538 kb on - strand, within MPMX20_02862at 3017.540 kb on - strand, within MPMX20_02862at 3017.540 kb on - strand, within MPMX20_02862at 3017.559 kb on + strand, within MPMX20_02862at 3017.559 kb on + strand, within MPMX20_02862at 3017.559 kb on + strand, within MPMX20_02862at 3017.559 kb on + strand, within MPMX20_02862at 3017.567 kb on - strand, within MPMX20_02862at 3017.567 kb on - strand, within MPMX20_02862at 3017.567 kb on - strand, within MPMX20_02862

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,015,281 + MPMX20_02858 0.81 -0.8
3,015,323 - MPMX20_02858 0.84 +0.2
3,015,385 - MPMX20_02858 0.88 -0.4
3,015,519 - -0.7
3,015,519 - +1.2
3,015,547 - -1.7
3,015,624 + -1.0
3,015,667 + +0.9
3,015,680 + MPMX20_02859 0.12 -0.6
3,015,680 + MPMX20_02859 0.12 -1.4
3,015,699 + MPMX20_02859 0.16 -0.2
3,015,707 - MPMX20_02859 0.18 +0.9
3,015,733 - MPMX20_02859 0.24 +1.0
3,015,738 - MPMX20_02859 0.26 +0.2
3,015,781 + MPMX20_02859 0.36 -0.6
3,015,843 + MPMX20_02859 0.51 +0.6
3,015,846 - MPMX20_02859 0.52 -0.0
3,015,848 + MPMX20_02859 0.52 -0.0
3,015,851 - MPMX20_02859 0.53 +0.4
3,015,892 + MPMX20_02859 0.63 +0.0
3,015,892 + MPMX20_02859 0.63 +0.4
3,015,900 - MPMX20_02859 0.65 +0.2
3,015,900 - MPMX20_02859 0.65 -0.4
3,015,921 + MPMX20_02859 0.70 +0.2
3,015,973 + MPMX20_02859 0.82 -0.6
3,016,118 + -0.5
3,016,171 - -0.9
3,016,237 + -0.0
3,016,237 + -0.1
3,016,237 + -1.3
3,016,245 - -1.2
3,016,266 + -1.3
3,016,270 + -0.9
3,016,334 + MPMX20_02860 0.18 -0.9
3,016,342 + MPMX20_02860 0.20 -1.3
3,016,350 - MPMX20_02860 0.23 -0.5
3,016,351 + MPMX20_02860 0.23 -1.1
3,016,361 + MPMX20_02860 0.26 -1.6
3,016,412 - MPMX20_02860 0.42 -1.7
3,016,428 - MPMX20_02860 0.47 -1.1
3,016,433 - MPMX20_02860 0.48 -0.9
3,016,450 + MPMX20_02860 0.53 -1.1
3,016,458 - MPMX20_02860 0.56 -1.3
3,016,520 + MPMX20_02860 0.75 -1.0
3,016,520 + MPMX20_02860 0.75 -1.1
3,016,520 + MPMX20_02860 0.75 -1.2
3,016,520 + MPMX20_02860 0.75 -1.4
3,016,559 - MPMX20_02860 0.87 -1.3
3,016,628 + MPMX20_02861 0.12 -0.7
3,016,628 + MPMX20_02861 0.12 -0.9
3,016,636 - MPMX20_02861 0.15 -1.0
3,016,650 + MPMX20_02861 0.21 -1.1
3,016,657 + MPMX20_02861 0.24 -1.2
3,016,660 - MPMX20_02861 0.25 -1.2
3,016,689 + MPMX20_02861 0.37 -0.6
3,016,691 + MPMX20_02861 0.38 -0.4
3,016,691 + MPMX20_02861 0.38 -1.1
3,016,691 + MPMX20_02861 0.38 -1.3
3,016,691 + MPMX20_02861 0.38 -0.3
3,016,691 + MPMX20_02861 0.38 -1.2
3,016,697 - MPMX20_02861 0.40 -1.3
3,016,699 - MPMX20_02861 0.41 -0.5
3,016,699 - MPMX20_02861 0.41 -0.0
3,016,699 - MPMX20_02861 0.41 -1.3
3,016,715 + MPMX20_02861 0.48 -0.5
3,016,772 + MPMX20_02861 0.72 -0.8
3,016,778 + MPMX20_02861 0.74 -0.0
3,016,786 + MPMX20_02861 0.78 -1.6
3,016,786 - MPMX20_02861 0.78 -1.3
3,016,786 - MPMX20_02861 0.78 -1.0
3,016,786 - MPMX20_02861 0.78 -1.9
3,016,792 - MPMX20_02861 0.80 +0.2
3,016,824 - -1.3
3,016,979 - -1.6
3,017,007 + -1.5
3,017,007 + -1.2
3,017,007 + -1.1
3,017,007 + -1.9
3,017,015 - -1.4
3,017,015 - -1.1
3,017,017 + -1.9
3,017,050 - -1.1
3,017,050 - -1.0
3,017,050 - -0.4
3,017,050 - -0.8
3,017,187 - MPMX20_02862 0.25 -1.1
3,017,292 - MPMX20_02862 0.39 -1.2
3,017,307 + MPMX20_02862 0.41 -1.4
3,017,307 + MPMX20_02862 0.41 -1.2
3,017,307 + MPMX20_02862 0.41 -1.5
3,017,315 - MPMX20_02862 0.42 -1.3
3,017,341 - MPMX20_02862 0.45 -1.6
3,017,368 + MPMX20_02862 0.49 -1.5
3,017,432 + MPMX20_02862 0.57 -1.3
3,017,437 + MPMX20_02862 0.58 -1.7
3,017,476 + MPMX20_02862 0.63 +1.9
3,017,476 + MPMX20_02862 0.63 -2.6
3,017,486 + MPMX20_02862 0.64 -2.8
3,017,493 + MPMX20_02862 0.65 -0.9
3,017,501 - MPMX20_02862 0.66 -0.9
3,017,530 - MPMX20_02862 0.69 -1.1
3,017,532 + MPMX20_02862 0.70 -1.5
3,017,538 - MPMX20_02862 0.71 -0.7
3,017,540 - MPMX20_02862 0.71 -1.4
3,017,540 - MPMX20_02862 0.71 -1.5
3,017,559 + MPMX20_02862 0.73 -1.4
3,017,559 + MPMX20_02862 0.73 -1.3
3,017,559 + MPMX20_02862 0.73 -1.3
3,017,559 + MPMX20_02862 0.73 -1.6
3,017,567 - MPMX20_02862 0.74 -1.3
3,017,567 - MPMX20_02862 0.74 -1.1
3,017,567 - MPMX20_02862 0.74 -1.1

Or see this region's nucleotide sequence