Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02700 and MPMX20_02701 are separated by 67 nucleotides MPMX20_02701 and MPMX20_02702 are separated by 201 nucleotides
MPMX20_02700: MPMX20_02700 - hypothetical protein, at 2,854,622 to 2,856,154
_02700
MPMX20_02701: MPMX20_02701 - Fatty acid metabolism regulator protein, at 2,856,222 to 2,856,941
_02701
MPMX20_02702: MPMX20_02702 - Na(+)/H(+) antiporter NhaB, at 2,857,143 to 2,858,681
_02702
Position (kb)
2856
2857 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2855.240 kb on - strand, within MPMX20_02700 at 2855.246 kb on + strand, within MPMX20_02700 at 2855.328 kb on + strand, within MPMX20_02700 at 2855.363 kb on - strand, within MPMX20_02700 at 2855.385 kb on + strand, within MPMX20_02700 at 2855.388 kb on - strand, within MPMX20_02700 at 2855.393 kb on - strand, within MPMX20_02700 at 2855.393 kb on - strand, within MPMX20_02700 at 2855.488 kb on + strand, within MPMX20_02700 at 2855.528 kb on - strand, within MPMX20_02700 at 2855.578 kb on + strand, within MPMX20_02700 at 2855.588 kb on + strand, within MPMX20_02700 at 2855.588 kb on + strand, within MPMX20_02700 at 2855.596 kb on - strand, within MPMX20_02700 at 2855.606 kb on - strand, within MPMX20_02700 at 2855.613 kb on + strand, within MPMX20_02700 at 2855.634 kb on + strand, within MPMX20_02700 at 2855.642 kb on - strand, within MPMX20_02700 at 2855.714 kb on + strand, within MPMX20_02700 at 2855.747 kb on - strand, within MPMX20_02700 at 2855.789 kb on - strand, within MPMX20_02700 at 2855.817 kb on + strand, within MPMX20_02700 at 2855.839 kb on - strand, within MPMX20_02700 at 2855.906 kb on - strand, within MPMX20_02700 at 2855.933 kb on + strand, within MPMX20_02700 at 2855.951 kb on - strand, within MPMX20_02700 at 2855.990 kb on - strand, within MPMX20_02700 at 2856.007 kb on + strand at 2856.017 kb on - strand at 2856.017 kb on - strand at 2856.069 kb on + strand at 2856.077 kb on - strand at 2856.151 kb on + strand at 2856.162 kb on - strand at 2856.162 kb on - strand at 2856.197 kb on + strand at 2856.236 kb on - strand at 2856.318 kb on + strand, within MPMX20_02701 at 2856.545 kb on + strand, within MPMX20_02701 at 2856.550 kb on + strand, within MPMX20_02701 at 2856.555 kb on + strand, within MPMX20_02701 at 2856.572 kb on + strand, within MPMX20_02701 at 2856.574 kb on + strand, within MPMX20_02701 at 2856.739 kb on + strand, within MPMX20_02701 at 2856.975 kb on + strand at 2856.980 kb on + strand at 2857.000 kb on + strand at 2857.010 kb on + strand at 2857.078 kb on + strand at 2857.201 kb on + strand at 2857.201 kb on + strand at 2857.201 kb on + strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.209 kb on - strand at 2857.223 kb on - strand at 2857.223 kb on - strand at 2857.231 kb on - strand at 2857.246 kb on + strand at 2857.254 kb on - strand at 2857.254 kb on - strand at 2857.290 kb on + strand at 2857.290 kb on + strand at 2857.302 kb on + strand, within MPMX20_02702 at 2857.302 kb on + strand, within MPMX20_02702 at 2857.314 kb on + strand, within MPMX20_02702 at 2857.327 kb on + strand, within MPMX20_02702 at 2857.335 kb on - strand, within MPMX20_02702 at 2857.337 kb on + strand, within MPMX20_02702 at 2857.384 kb on + strand, within MPMX20_02702 at 2857.387 kb on - strand, within MPMX20_02702 at 2857.513 kb on - strand, within MPMX20_02702 at 2857.605 kb on - strand, within MPMX20_02702 at 2857.607 kb on - strand, within MPMX20_02702 at 2857.651 kb on + strand, within MPMX20_02702 at 2857.663 kb on + strand, within MPMX20_02702 at 2857.682 kb on + strand, within MPMX20_02702 at 2857.749 kb on - strand, within MPMX20_02702 at 2857.768 kb on - strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.770 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.884 kb on + strand, within MPMX20_02702 at 2857.914 kb on - strand, within MPMX20_02702 at 2857.914 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702 at 2857.917 kb on - strand, within MPMX20_02702
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 2,855,240 - MPMX20_02700 0.40 -0.9 2,855,246 + MPMX20_02700 0.41 -0.2 2,855,328 + MPMX20_02700 0.46 -0.3 2,855,363 - MPMX20_02700 0.48 +1.1 2,855,385 + MPMX20_02700 0.50 -0.4 2,855,388 - MPMX20_02700 0.50 -2.3 2,855,393 - MPMX20_02700 0.50 +0.4 2,855,393 - MPMX20_02700 0.50 -0.2 2,855,488 + MPMX20_02700 0.56 -0.2 2,855,528 - MPMX20_02700 0.59 -0.6 2,855,578 + MPMX20_02700 0.62 -1.3 2,855,588 + MPMX20_02700 0.63 -0.0 2,855,588 + MPMX20_02700 0.63 -0.4 2,855,596 - MPMX20_02700 0.64 +0.4 2,855,606 - MPMX20_02700 0.64 +0.3 2,855,613 + MPMX20_02700 0.65 -0.5 2,855,634 + MPMX20_02700 0.66 -1.3 2,855,642 - MPMX20_02700 0.67 +0.7 2,855,714 + MPMX20_02700 0.71 -2.2 2,855,747 - MPMX20_02700 0.73 -0.0 2,855,789 - MPMX20_02700 0.76 +0.0 2,855,817 + MPMX20_02700 0.78 -1.0 2,855,839 - MPMX20_02700 0.79 +0.2 2,855,906 - MPMX20_02700 0.84 -1.0 2,855,933 + MPMX20_02700 0.86 +0.2 2,855,951 - MPMX20_02700 0.87 -0.5 2,855,990 - MPMX20_02700 0.89 -1.3 2,856,007 + -0.2 2,856,017 - -0.4 2,856,017 - +0.2 2,856,069 + -0.4 2,856,077 - -0.0 2,856,151 + +0.2 2,856,162 - -2.1 2,856,162 - +0.4 2,856,197 + +0.8 2,856,236 - -1.1 2,856,318 + MPMX20_02701 0.13 -0.8 2,856,545 + MPMX20_02701 0.45 +0.8 2,856,550 + MPMX20_02701 0.46 -2.2 2,856,555 + MPMX20_02701 0.46 -2.5 2,856,572 + MPMX20_02701 0.49 +0.3 2,856,574 + MPMX20_02701 0.49 -1.5 2,856,739 + MPMX20_02701 0.72 -2.0 2,856,975 + -1.6 2,856,980 + +0.6 2,857,000 + -0.8 2,857,010 + -1.2 2,857,078 + -0.8 2,857,201 + +2.6 2,857,201 + -0.7 2,857,201 + -0.8 2,857,209 - -0.8 2,857,209 - -0.7 2,857,209 - +0.3 2,857,209 - -2.6 2,857,223 - +0.6 2,857,223 - +0.0 2,857,231 - +1.7 2,857,246 + -0.1 2,857,254 - -1.2 2,857,254 - -0.6 2,857,290 + -0.8 2,857,290 + +0.7 2,857,302 + MPMX20_02702 0.10 +0.1 2,857,302 + MPMX20_02702 0.10 -0.3 2,857,314 + MPMX20_02702 0.11 -0.1 2,857,327 + MPMX20_02702 0.12 +0.6 2,857,335 - MPMX20_02702 0.12 -0.6 2,857,337 + MPMX20_02702 0.13 +0.4 2,857,384 + MPMX20_02702 0.16 -0.7 2,857,387 - MPMX20_02702 0.16 -0.6 2,857,513 - MPMX20_02702 0.24 +0.2 2,857,605 - MPMX20_02702 0.30 +0.5 2,857,607 - MPMX20_02702 0.30 -0.4 2,857,651 + MPMX20_02702 0.33 +0.1 2,857,663 + MPMX20_02702 0.34 +0.6 2,857,682 + MPMX20_02702 0.35 +0.2 2,857,749 - MPMX20_02702 0.39 +0.4 2,857,768 - MPMX20_02702 0.41 +0.1 2,857,770 + MPMX20_02702 0.41 +0.1 2,857,770 + MPMX20_02702 0.41 +0.1 2,857,770 + MPMX20_02702 0.41 +0.6 2,857,770 + MPMX20_02702 0.41 +0.6 2,857,884 + MPMX20_02702 0.48 -0.2 2,857,884 + MPMX20_02702 0.48 +0.4 2,857,884 + MPMX20_02702 0.48 +0.8 2,857,914 - MPMX20_02702 0.50 -0.7 2,857,914 - MPMX20_02702 0.50 +0.4 2,857,917 - MPMX20_02702 0.50 +0.9 2,857,917 - MPMX20_02702 0.50 -1.2 2,857,917 - MPMX20_02702 0.50 -0.4
Or see this region's nucleotide sequence