Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02591

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02590 and MPMX20_02591 are separated by 639 nucleotidesMPMX20_02591 and MPMX20_02592 are separated by 200 nucleotides MPMX20_02590: MPMX20_02590 - Thymidine kinase, at 2,728,395 to 2,728,919 _02590 MPMX20_02591: MPMX20_02591 - DNA-binding protein H-NS, at 2,729,559 to 2,729,972 _02591 MPMX20_02592: MPMX20_02592 - UTP--glucose-1-phosphate uridylyltransferase, at 2,730,173 to 2,731,081 _02592 Position (kb) 2729 2730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2728.565 kb on - strand, within MPMX20_02590at 2728.567 kb on - strand, within MPMX20_02590at 2728.590 kb on - strand, within MPMX20_02590at 2728.590 kb on - strand, within MPMX20_02590at 2728.598 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.615 kb on + strand, within MPMX20_02590at 2728.623 kb on - strand, within MPMX20_02590at 2728.623 kb on - strand, within MPMX20_02590at 2728.623 kb on - strand, within MPMX20_02590at 2728.623 kb on - strand, within MPMX20_02590at 2728.623 kb on - strand, within MPMX20_02590at 2728.659 kb on + strand, within MPMX20_02590at 2728.659 kb on + strand, within MPMX20_02590at 2728.659 kb on + strand, within MPMX20_02590at 2728.664 kb on + strand, within MPMX20_02590at 2728.664 kb on + strand, within MPMX20_02590at 2728.666 kb on + strand, within MPMX20_02590at 2728.671 kb on + strand, within MPMX20_02590at 2728.671 kb on + strand, within MPMX20_02590at 2728.672 kb on - strand, within MPMX20_02590at 2728.672 kb on - strand, within MPMX20_02590at 2728.674 kb on - strand, within MPMX20_02590at 2728.674 kb on - strand, within MPMX20_02590at 2728.679 kb on - strand, within MPMX20_02590at 2728.681 kb on + strand, within MPMX20_02590at 2728.712 kb on - strand, within MPMX20_02590at 2728.742 kb on + strand, within MPMX20_02590at 2728.752 kb on + strand, within MPMX20_02590at 2728.760 kb on - strand, within MPMX20_02590at 2728.760 kb on - strand, within MPMX20_02590at 2728.760 kb on - strand, within MPMX20_02590at 2728.772 kb on + strand, within MPMX20_02590at 2728.779 kb on + strand, within MPMX20_02590at 2728.779 kb on + strand, within MPMX20_02590at 2728.789 kb on + strand, within MPMX20_02590at 2728.794 kb on + strand, within MPMX20_02590at 2728.794 kb on + strand, within MPMX20_02590at 2728.797 kb on - strand, within MPMX20_02590at 2728.798 kb on + strand, within MPMX20_02590at 2728.798 kb on + strand, within MPMX20_02590at 2728.798 kb on + strand, within MPMX20_02590at 2728.798 kb on + strand, within MPMX20_02590at 2728.806 kb on - strand, within MPMX20_02590at 2728.819 kb on + strand, within MPMX20_02590at 2728.820 kb on + strand, within MPMX20_02590at 2728.829 kb on + strand, within MPMX20_02590at 2728.837 kb on + strand, within MPMX20_02590at 2728.837 kb on - strand, within MPMX20_02590at 2728.847 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.863 kb on + strand, within MPMX20_02590at 2728.868 kb on + strandat 2728.871 kb on - strandat 2728.871 kb on - strandat 2728.873 kb on + strandat 2728.873 kb on + strandat 2728.873 kb on + strandat 2728.873 kb on + strandat 2728.873 kb on + strandat 2728.874 kb on + strandat 2728.874 kb on + strandat 2728.874 kb on + strandat 2728.876 kb on - strandat 2728.890 kb on + strandat 2728.907 kb on + strandat 2728.909 kb on + strandat 2728.915 kb on - strandat 2728.917 kb on + strandat 2728.917 kb on + strandat 2728.919 kb on - strandat 2728.925 kb on - strandat 2728.925 kb on - strandat 2728.944 kb on + strandat 2728.945 kb on + strandat 2728.945 kb on + strandat 2728.950 kb on + strandat 2728.952 kb on - strandat 2728.953 kb on - strandat 2729.008 kb on - strandat 2729.020 kb on + strandat 2729.020 kb on + strandat 2729.020 kb on + strandat 2729.025 kb on + strandat 2729.028 kb on - strandat 2729.032 kb on + strandat 2729.088 kb on - strandat 2729.088 kb on - strandat 2729.090 kb on + strandat 2729.095 kb on - strandat 2729.097 kb on + strandat 2729.097 kb on - strandat 2729.098 kb on - strandat 2729.099 kb on + strandat 2729.099 kb on + strandat 2729.099 kb on - strandat 2729.101 kb on - strandat 2729.104 kb on + strandat 2729.104 kb on + strandat 2729.105 kb on - strandat 2729.107 kb on - strandat 2729.107 kb on - strandat 2729.107 kb on - strandat 2729.107 kb on - strandat 2729.107 kb on - strandat 2729.108 kb on + strandat 2729.112 kb on - strandat 2729.116 kb on + strandat 2729.117 kb on - strandat 2729.124 kb on - strandat 2729.162 kb on + strandat 2729.167 kb on + strandat 2729.167 kb on + strandat 2729.178 kb on + strandat 2729.184 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on + strandat 2729.186 kb on - strandat 2729.193 kb on + strandat 2729.194 kb on - strandat 2729.194 kb on - strandat 2729.194 kb on - strandat 2729.194 kb on - strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.203 kb on + strandat 2729.204 kb on + strandat 2729.204 kb on + strandat 2729.211 kb on - strandat 2729.262 kb on + strandat 2729.273 kb on + strandat 2729.273 kb on + strandat 2729.273 kb on + strandat 2729.273 kb on + strandat 2729.275 kb on + strandat 2729.281 kb on - strandat 2729.282 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.283 kb on + strandat 2729.290 kb on - strandat 2729.290 kb on - strandat 2729.291 kb on - strandat 2729.291 kb on - strandat 2729.372 kb on - strandat 2729.377 kb on - strandat 2729.378 kb on - strandat 2729.378 kb on - strandat 2729.395 kb on + strandat 2729.483 kb on - strandat 2729.491 kb on - strandat 2729.510 kb on + strandat 2729.854 kb on + strand, within MPMX20_02591at 2729.854 kb on + strand, within MPMX20_02591at 2729.884 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.896 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.902 kb on + strand, within MPMX20_02591at 2729.938 kb on + strandat 2729.938 kb on + strandat 2729.938 kb on + strandat 2729.948 kb on + strandat 2729.966 kb on + strandat 2729.974 kb on - strandat 2729.991 kb on + strandat 2730.037 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.041 kb on + strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.049 kb on - strandat 2730.053 kb on + strandat 2730.061 kb on - strandat 2730.061 kb on - strandat 2730.105 kb on - strandat 2730.111 kb on + strandat 2730.135 kb on + strandat 2730.142 kb on - strandat 2730.142 kb on - strandat 2730.142 kb on - strandat 2730.142 kb on - strandat 2730.143 kb on - strandat 2730.143 kb on - strandat 2730.147 kb on - strandat 2730.150 kb on + strandat 2730.150 kb on + strandat 2730.155 kb on + strandat 2730.160 kb on + strandat 2730.163 kb on - strandat 2730.163 kb on - strandat 2730.163 kb on - strandat 2730.163 kb on - strandat 2730.168 kb on - strandat 2730.168 kb on - strandat 2730.202 kb on - strandat 2730.204 kb on - strandat 2730.204 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
2,728,565 - MPMX20_02590 0.32 -0.3
2,728,567 - MPMX20_02590 0.33 -2.8
2,728,590 - MPMX20_02590 0.37 +0.5
2,728,590 - MPMX20_02590 0.37 -0.2
2,728,598 + MPMX20_02590 0.39 +0.3
2,728,615 + MPMX20_02590 0.42 +1.1
2,728,615 + MPMX20_02590 0.42 +0.4
2,728,615 + MPMX20_02590 0.42 -0.0
2,728,615 + MPMX20_02590 0.42 -0.1
2,728,615 + MPMX20_02590 0.42 -1.1
2,728,615 + MPMX20_02590 0.42 +0.3
2,728,615 + MPMX20_02590 0.42 +1.6
2,728,623 - MPMX20_02590 0.43 -2.1
2,728,623 - MPMX20_02590 0.43 -0.0
2,728,623 - MPMX20_02590 0.43 +0.4
2,728,623 - MPMX20_02590 0.43 -0.6
2,728,623 - MPMX20_02590 0.43 -0.4
2,728,659 + MPMX20_02590 0.50 -2.6
2,728,659 + MPMX20_02590 0.50 +2.4
2,728,659 + MPMX20_02590 0.50 +0.4
2,728,664 + MPMX20_02590 0.51 -1.3
2,728,664 + MPMX20_02590 0.51 -1.5
2,728,666 + MPMX20_02590 0.52 -0.7
2,728,671 + MPMX20_02590 0.53 +1.1
2,728,671 + MPMX20_02590 0.53 -0.5
2,728,672 - MPMX20_02590 0.53 -1.5
2,728,672 - MPMX20_02590 0.53 -0.7
2,728,674 - MPMX20_02590 0.53 +0.3
2,728,674 - MPMX20_02590 0.53 -0.7
2,728,679 - MPMX20_02590 0.54 -0.6
2,728,681 + MPMX20_02590 0.54 -2.0
2,728,712 - MPMX20_02590 0.60 -0.5
2,728,742 + MPMX20_02590 0.66 +0.4
2,728,752 + MPMX20_02590 0.68 +0.8
2,728,760 - MPMX20_02590 0.70 -2.2
2,728,760 - MPMX20_02590 0.70 +0.7
2,728,760 - MPMX20_02590 0.70 -0.6
2,728,772 + MPMX20_02590 0.72 +0.1
2,728,779 + MPMX20_02590 0.73 -0.5
2,728,779 + MPMX20_02590 0.73 -0.4
2,728,789 + MPMX20_02590 0.75 -0.7
2,728,794 + MPMX20_02590 0.76 +0.7
2,728,794 + MPMX20_02590 0.76 -0.0
2,728,797 - MPMX20_02590 0.77 -0.6
2,728,798 + MPMX20_02590 0.77 +0.3
2,728,798 + MPMX20_02590 0.77 -0.5
2,728,798 + MPMX20_02590 0.77 +0.9
2,728,798 + MPMX20_02590 0.77 -0.3
2,728,806 - MPMX20_02590 0.78 -1.3
2,728,819 + MPMX20_02590 0.81 -0.3
2,728,820 + MPMX20_02590 0.81 +1.6
2,728,829 + MPMX20_02590 0.83 -1.6
2,728,837 + MPMX20_02590 0.84 -0.6
2,728,837 - MPMX20_02590 0.84 +0.0
2,728,847 + MPMX20_02590 0.86 +0.6
2,728,863 + MPMX20_02590 0.89 +0.6
2,728,863 + MPMX20_02590 0.89 -1.8
2,728,863 + MPMX20_02590 0.89 -0.4
2,728,863 + MPMX20_02590 0.89 -0.4
2,728,863 + MPMX20_02590 0.89 -0.1
2,728,863 + MPMX20_02590 0.89 +0.0
2,728,868 + -0.2
2,728,871 - -0.0
2,728,871 - +0.0
2,728,873 + -0.4
2,728,873 + -0.7
2,728,873 + -0.6
2,728,873 + -2.4
2,728,873 + +0.8
2,728,874 + -2.2
2,728,874 + +0.0
2,728,874 + -0.7
2,728,876 - -0.9
2,728,890 + +1.1
2,728,907 + -0.7
2,728,909 + +0.2
2,728,915 - -0.5
2,728,917 + -0.7
2,728,917 + -0.0
2,728,919 - +0.5
2,728,925 - -3.9
2,728,925 - +0.0
2,728,944 + -0.1
2,728,945 + -0.2
2,728,945 + -0.0
2,728,950 + -1.0
2,728,952 - -2.1
2,728,953 - -1.4
2,729,008 - -1.5
2,729,020 + +0.0
2,729,020 + +0.5
2,729,020 + -1.4
2,729,025 + -0.9
2,729,028 - -0.0
2,729,032 + -0.3
2,729,088 - -0.8
2,729,088 - -1.6
2,729,090 + -0.4
2,729,095 - -0.6
2,729,097 + +0.5
2,729,097 - -0.8
2,729,098 - +0.2
2,729,099 + -0.2
2,729,099 + +1.0
2,729,099 - +0.8
2,729,101 - -1.5
2,729,104 + +0.4
2,729,104 + -1.8
2,729,105 - -0.5
2,729,107 - -3.1
2,729,107 - -0.0
2,729,107 - +1.2
2,729,107 - -0.1
2,729,107 - -1.5
2,729,108 + +0.3
2,729,112 - -0.8
2,729,116 + -0.9
2,729,117 - +0.1
2,729,124 - -1.8
2,729,162 + -1.0
2,729,167 + -0.6
2,729,167 + -0.9
2,729,178 + -0.4
2,729,184 + -0.5
2,729,186 + +0.0
2,729,186 + +0.1
2,729,186 + -0.0
2,729,186 + +1.6
2,729,186 + -2.0
2,729,186 + -2.0
2,729,186 + +0.6
2,729,186 + -0.6
2,729,186 + -2.0
2,729,186 - -0.6
2,729,193 + -0.1
2,729,194 - +0.2
2,729,194 - -1.0
2,729,194 - -0.6
2,729,194 - -0.8
2,729,203 + -0.8
2,729,203 + +1.0
2,729,203 + -0.6
2,729,203 + +0.8
2,729,203 + -0.8
2,729,203 + +0.6
2,729,203 + -0.4
2,729,203 + -1.5
2,729,203 + +1.2
2,729,203 + -0.8
2,729,203 + -0.4
2,729,204 + -1.5
2,729,204 + -1.4
2,729,211 - +0.2
2,729,262 + +0.4
2,729,273 + -2.2
2,729,273 + +1.6
2,729,273 + -0.2
2,729,273 + +1.8
2,729,275 + -0.9
2,729,281 - -0.9
2,729,282 + -1.6
2,729,283 + -1.3
2,729,283 + -2.9
2,729,283 + +1.1
2,729,283 + +0.3
2,729,283 + -1.6
2,729,283 + -1.3
2,729,283 + +3.1
2,729,283 + -1.5
2,729,290 - +0.1
2,729,290 - -1.2
2,729,291 - -3.6
2,729,291 - -1.4
2,729,372 - -1.7
2,729,377 - -0.2
2,729,378 - +0.8
2,729,378 - -1.0
2,729,395 + -1.8
2,729,483 - -0.4
2,729,491 - -0.3
2,729,510 + -3.8
2,729,854 + MPMX20_02591 0.71 -3.0
2,729,854 + MPMX20_02591 0.71 -1.8
2,729,884 + MPMX20_02591 0.79 -0.0
2,729,896 + MPMX20_02591 0.81 -2.7
2,729,896 + MPMX20_02591 0.81 -1.6
2,729,896 + MPMX20_02591 0.81 -2.9
2,729,896 + MPMX20_02591 0.81 -3.0
2,729,896 + MPMX20_02591 0.81 -2.8
2,729,896 + MPMX20_02591 0.81 -2.2
2,729,896 + MPMX20_02591 0.81 -1.0
2,729,896 + MPMX20_02591 0.81 -0.3
2,729,902 + MPMX20_02591 0.83 -1.2
2,729,902 + MPMX20_02591 0.83 +0.5
2,729,902 + MPMX20_02591 0.83 -1.8
2,729,902 + MPMX20_02591 0.83 -3.9
2,729,902 + MPMX20_02591 0.83 -1.1
2,729,902 + MPMX20_02591 0.83 -2.8
2,729,902 + MPMX20_02591 0.83 -3.8
2,729,902 + MPMX20_02591 0.83 -1.3
2,729,938 + -2.1
2,729,938 + -2.0
2,729,938 + -2.6
2,729,948 + +1.4
2,729,966 + -0.2
2,729,974 - +0.8
2,729,991 + -0.6
2,730,037 + +0.3
2,730,041 + +0.8
2,730,041 + -0.2
2,730,041 + +0.2
2,730,041 + -1.3
2,730,041 + -1.0
2,730,041 + +0.6
2,730,041 + -0.1
2,730,041 + -0.1
2,730,041 + -0.7
2,730,041 + -0.9
2,730,041 + +0.4
2,730,041 + +0.2
2,730,041 + -0.8
2,730,041 + -0.5
2,730,041 + -0.1
2,730,041 + -1.5
2,730,041 + -0.2
2,730,041 + +0.5
2,730,041 + -0.2
2,730,049 - -0.1
2,730,049 - -0.4
2,730,049 - -0.6
2,730,049 - +0.5
2,730,049 - +0.6
2,730,049 - -1.1
2,730,049 - +2.0
2,730,049 - -0.7
2,730,049 - -0.5
2,730,049 - -0.1
2,730,049 - -1.4
2,730,049 - -0.5
2,730,049 - -3.5
2,730,049 - -0.8
2,730,049 - -0.3
2,730,049 - +0.4
2,730,049 - -0.2
2,730,049 - -0.8
2,730,049 - -1.4
2,730,049 - +0.3
2,730,049 - -1.5
2,730,049 - -0.5
2,730,049 - +0.4
2,730,049 - -1.3
2,730,053 + -1.2
2,730,061 - -2.2
2,730,061 - +0.3
2,730,105 - -0.6
2,730,111 + +0.4
2,730,135 + -1.3
2,730,142 - -0.3
2,730,142 - +0.1
2,730,142 - +0.6
2,730,142 - +0.7
2,730,143 - +0.8
2,730,143 - +0.4
2,730,147 - +0.1
2,730,150 + +0.5
2,730,150 + -2.4
2,730,155 + +0.5
2,730,160 + +0.1
2,730,163 - +0.8
2,730,163 - +0.0
2,730,163 - -1.1
2,730,163 - -0.5
2,730,168 - +0.0
2,730,168 - +0.2
2,730,202 - +0.5
2,730,204 - -2.2
2,730,204 - -0.2

Or see this region's nucleotide sequence