Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02590 and MPMX20_02591 are separated by 639 nucleotides MPMX20_02591 and MPMX20_02592 are separated by 200 nucleotides
MPMX20_02590: MPMX20_02590 - Thymidine kinase, at 2,728,395 to 2,728,919
_02590
MPMX20_02591: MPMX20_02591 - DNA-binding protein H-NS, at 2,729,559 to 2,729,972
_02591
MPMX20_02592: MPMX20_02592 - UTP--glucose-1-phosphate uridylyltransferase, at 2,730,173 to 2,731,081
_02592
Position (kb)
2729
2730 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2728.565 kb on - strand, within MPMX20_02590 at 2728.567 kb on - strand, within MPMX20_02590 at 2728.590 kb on - strand, within MPMX20_02590 at 2728.590 kb on - strand, within MPMX20_02590 at 2728.598 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.615 kb on + strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.623 kb on - strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.659 kb on + strand, within MPMX20_02590 at 2728.664 kb on + strand, within MPMX20_02590 at 2728.664 kb on + strand, within MPMX20_02590 at 2728.666 kb on + strand, within MPMX20_02590 at 2728.671 kb on + strand, within MPMX20_02590 at 2728.671 kb on + strand, within MPMX20_02590 at 2728.672 kb on - strand, within MPMX20_02590 at 2728.672 kb on - strand, within MPMX20_02590 at 2728.674 kb on - strand, within MPMX20_02590 at 2728.674 kb on - strand, within MPMX20_02590 at 2728.679 kb on - strand, within MPMX20_02590 at 2728.681 kb on + strand, within MPMX20_02590 at 2728.712 kb on - strand, within MPMX20_02590 at 2728.742 kb on + strand, within MPMX20_02590 at 2728.752 kb on + strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.760 kb on - strand, within MPMX20_02590 at 2728.772 kb on + strand, within MPMX20_02590 at 2728.779 kb on + strand, within MPMX20_02590 at 2728.779 kb on + strand, within MPMX20_02590 at 2728.789 kb on + strand, within MPMX20_02590 at 2728.794 kb on + strand, within MPMX20_02590 at 2728.794 kb on + strand, within MPMX20_02590 at 2728.797 kb on - strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.798 kb on + strand, within MPMX20_02590 at 2728.806 kb on - strand, within MPMX20_02590 at 2728.819 kb on + strand, within MPMX20_02590 at 2728.820 kb on + strand, within MPMX20_02590 at 2728.829 kb on + strand, within MPMX20_02590 at 2728.837 kb on + strand, within MPMX20_02590 at 2728.837 kb on - strand, within MPMX20_02590 at 2728.847 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.863 kb on + strand, within MPMX20_02590 at 2728.868 kb on + strand at 2728.871 kb on - strand at 2728.871 kb on - strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.873 kb on + strand at 2728.874 kb on + strand at 2728.874 kb on + strand at 2728.874 kb on + strand at 2728.876 kb on - strand at 2728.890 kb on + strand at 2728.907 kb on + strand at 2728.909 kb on + strand at 2728.915 kb on - strand at 2728.917 kb on + strand at 2728.917 kb on + strand at 2728.919 kb on - strand at 2728.925 kb on - strand at 2728.925 kb on - strand at 2728.944 kb on + strand at 2728.945 kb on + strand at 2728.945 kb on + strand at 2728.950 kb on + strand at 2728.952 kb on - strand at 2728.953 kb on - strand at 2729.008 kb on - strand at 2729.020 kb on + strand at 2729.020 kb on + strand at 2729.020 kb on + strand at 2729.025 kb on + strand at 2729.028 kb on - strand at 2729.032 kb on + strand at 2729.088 kb on - strand at 2729.088 kb on - strand at 2729.090 kb on + strand at 2729.095 kb on - strand at 2729.097 kb on + strand at 2729.097 kb on - strand at 2729.098 kb on - strand at 2729.099 kb on + strand at 2729.099 kb on + strand at 2729.099 kb on - strand at 2729.101 kb on - strand at 2729.104 kb on + strand at 2729.104 kb on + strand at 2729.105 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.107 kb on - strand at 2729.108 kb on + strand at 2729.112 kb on - strand at 2729.116 kb on + strand at 2729.117 kb on - strand at 2729.124 kb on - strand at 2729.162 kb on + strand at 2729.167 kb on + strand at 2729.167 kb on + strand at 2729.178 kb on + strand at 2729.184 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on + strand at 2729.186 kb on - strand at 2729.193 kb on + strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.194 kb on - strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.203 kb on + strand at 2729.204 kb on + strand at 2729.204 kb on + strand at 2729.211 kb on - strand at 2729.262 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.273 kb on + strand at 2729.275 kb on + strand at 2729.281 kb on - strand at 2729.282 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.283 kb on + strand at 2729.290 kb on - strand at 2729.290 kb on - strand at 2729.291 kb on - strand at 2729.291 kb on - strand at 2729.372 kb on - strand at 2729.377 kb on - strand at 2729.378 kb on - strand at 2729.378 kb on - strand at 2729.395 kb on + strand at 2729.483 kb on - strand at 2729.491 kb on - strand at 2729.510 kb on + strand at 2729.854 kb on + strand, within MPMX20_02591 at 2729.854 kb on + strand, within MPMX20_02591 at 2729.884 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.896 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.902 kb on + strand, within MPMX20_02591 at 2729.938 kb on + strand at 2729.938 kb on + strand at 2729.938 kb on + strand at 2729.948 kb on + strand at 2729.966 kb on + strand at 2729.974 kb on - strand at 2729.991 kb on + strand at 2730.037 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.041 kb on + strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.049 kb on - strand at 2730.053 kb on + strand at 2730.061 kb on - strand at 2730.061 kb on - strand at 2730.105 kb on - strand at 2730.111 kb on + strand at 2730.135 kb on + strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.142 kb on - strand at 2730.143 kb on - strand at 2730.143 kb on - strand at 2730.147 kb on - strand at 2730.150 kb on + strand at 2730.150 kb on + strand at 2730.155 kb on + strand at 2730.160 kb on + strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.163 kb on - strand at 2730.168 kb on - strand at 2730.168 kb on - strand at 2730.202 kb on - strand at 2730.204 kb on - strand at 2730.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 2,728,565 - MPMX20_02590 0.32 -0.3 2,728,567 - MPMX20_02590 0.33 -2.8 2,728,590 - MPMX20_02590 0.37 +0.5 2,728,590 - MPMX20_02590 0.37 -0.2 2,728,598 + MPMX20_02590 0.39 +0.3 2,728,615 + MPMX20_02590 0.42 +1.1 2,728,615 + MPMX20_02590 0.42 +0.4 2,728,615 + MPMX20_02590 0.42 -0.0 2,728,615 + MPMX20_02590 0.42 -0.1 2,728,615 + MPMX20_02590 0.42 -1.1 2,728,615 + MPMX20_02590 0.42 +0.3 2,728,615 + MPMX20_02590 0.42 +1.6 2,728,623 - MPMX20_02590 0.43 -2.1 2,728,623 - MPMX20_02590 0.43 -0.0 2,728,623 - MPMX20_02590 0.43 +0.4 2,728,623 - MPMX20_02590 0.43 -0.6 2,728,623 - MPMX20_02590 0.43 -0.4 2,728,659 + MPMX20_02590 0.50 -2.6 2,728,659 + MPMX20_02590 0.50 +2.4 2,728,659 + MPMX20_02590 0.50 +0.4 2,728,664 + MPMX20_02590 0.51 -1.3 2,728,664 + MPMX20_02590 0.51 -1.5 2,728,666 + MPMX20_02590 0.52 -0.7 2,728,671 + MPMX20_02590 0.53 +1.1 2,728,671 + MPMX20_02590 0.53 -0.5 2,728,672 - MPMX20_02590 0.53 -1.5 2,728,672 - MPMX20_02590 0.53 -0.7 2,728,674 - MPMX20_02590 0.53 +0.3 2,728,674 - MPMX20_02590 0.53 -0.7 2,728,679 - MPMX20_02590 0.54 -0.6 2,728,681 + MPMX20_02590 0.54 -2.0 2,728,712 - MPMX20_02590 0.60 -0.5 2,728,742 + MPMX20_02590 0.66 +0.4 2,728,752 + MPMX20_02590 0.68 +0.8 2,728,760 - MPMX20_02590 0.70 -2.2 2,728,760 - MPMX20_02590 0.70 +0.7 2,728,760 - MPMX20_02590 0.70 -0.6 2,728,772 + MPMX20_02590 0.72 +0.1 2,728,779 + MPMX20_02590 0.73 -0.5 2,728,779 + MPMX20_02590 0.73 -0.4 2,728,789 + MPMX20_02590 0.75 -0.7 2,728,794 + MPMX20_02590 0.76 +0.7 2,728,794 + MPMX20_02590 0.76 -0.0 2,728,797 - MPMX20_02590 0.77 -0.6 2,728,798 + MPMX20_02590 0.77 +0.3 2,728,798 + MPMX20_02590 0.77 -0.5 2,728,798 + MPMX20_02590 0.77 +0.9 2,728,798 + MPMX20_02590 0.77 -0.3 2,728,806 - MPMX20_02590 0.78 -1.3 2,728,819 + MPMX20_02590 0.81 -0.3 2,728,820 + MPMX20_02590 0.81 +1.6 2,728,829 + MPMX20_02590 0.83 -1.6 2,728,837 + MPMX20_02590 0.84 -0.6 2,728,837 - MPMX20_02590 0.84 +0.0 2,728,847 + MPMX20_02590 0.86 +0.6 2,728,863 + MPMX20_02590 0.89 +0.6 2,728,863 + MPMX20_02590 0.89 -1.8 2,728,863 + MPMX20_02590 0.89 -0.4 2,728,863 + MPMX20_02590 0.89 -0.4 2,728,863 + MPMX20_02590 0.89 -0.1 2,728,863 + MPMX20_02590 0.89 +0.0 2,728,868 + -0.2 2,728,871 - -0.0 2,728,871 - +0.0 2,728,873 + -0.4 2,728,873 + -0.7 2,728,873 + -0.6 2,728,873 + -2.4 2,728,873 + +0.8 2,728,874 + -2.2 2,728,874 + +0.0 2,728,874 + -0.7 2,728,876 - -0.9 2,728,890 + +1.1 2,728,907 + -0.7 2,728,909 + +0.2 2,728,915 - -0.5 2,728,917 + -0.7 2,728,917 + -0.0 2,728,919 - +0.5 2,728,925 - -3.9 2,728,925 - +0.0 2,728,944 + -0.1 2,728,945 + -0.2 2,728,945 + -0.0 2,728,950 + -1.0 2,728,952 - -2.1 2,728,953 - -1.4 2,729,008 - -1.5 2,729,020 + +0.0 2,729,020 + +0.5 2,729,020 + -1.4 2,729,025 + -0.9 2,729,028 - -0.0 2,729,032 + -0.3 2,729,088 - -0.8 2,729,088 - -1.6 2,729,090 + -0.4 2,729,095 - -0.6 2,729,097 + +0.5 2,729,097 - -0.8 2,729,098 - +0.2 2,729,099 + -0.2 2,729,099 + +1.0 2,729,099 - +0.8 2,729,101 - -1.5 2,729,104 + +0.4 2,729,104 + -1.8 2,729,105 - -0.5 2,729,107 - -3.1 2,729,107 - -0.0 2,729,107 - +1.2 2,729,107 - -0.1 2,729,107 - -1.5 2,729,108 + +0.3 2,729,112 - -0.8 2,729,116 + -0.9 2,729,117 - +0.1 2,729,124 - -1.8 2,729,162 + -1.0 2,729,167 + -0.6 2,729,167 + -0.9 2,729,178 + -0.4 2,729,184 + -0.5 2,729,186 + +0.0 2,729,186 + +0.1 2,729,186 + -0.0 2,729,186 + +1.6 2,729,186 + -2.0 2,729,186 + -2.0 2,729,186 + +0.6 2,729,186 + -0.6 2,729,186 + -2.0 2,729,186 - -0.6 2,729,193 + -0.1 2,729,194 - +0.2 2,729,194 - -1.0 2,729,194 - -0.6 2,729,194 - -0.8 2,729,203 + -0.8 2,729,203 + +1.0 2,729,203 + -0.6 2,729,203 + +0.8 2,729,203 + -0.8 2,729,203 + +0.6 2,729,203 + -0.4 2,729,203 + -1.5 2,729,203 + +1.2 2,729,203 + -0.8 2,729,203 + -0.4 2,729,204 + -1.5 2,729,204 + -1.4 2,729,211 - +0.2 2,729,262 + +0.4 2,729,273 + -2.2 2,729,273 + +1.6 2,729,273 + -0.2 2,729,273 + +1.8 2,729,275 + -0.9 2,729,281 - -0.9 2,729,282 + -1.6 2,729,283 + -1.3 2,729,283 + -2.9 2,729,283 + +1.1 2,729,283 + +0.3 2,729,283 + -1.6 2,729,283 + -1.3 2,729,283 + +3.1 2,729,283 + -1.5 2,729,290 - +0.1 2,729,290 - -1.2 2,729,291 - -3.6 2,729,291 - -1.4 2,729,372 - -1.7 2,729,377 - -0.2 2,729,378 - +0.8 2,729,378 - -1.0 2,729,395 + -1.8 2,729,483 - -0.4 2,729,491 - -0.3 2,729,510 + -3.8 2,729,854 + MPMX20_02591 0.71 -3.0 2,729,854 + MPMX20_02591 0.71 -1.8 2,729,884 + MPMX20_02591 0.79 -0.0 2,729,896 + MPMX20_02591 0.81 -2.7 2,729,896 + MPMX20_02591 0.81 -1.6 2,729,896 + MPMX20_02591 0.81 -2.9 2,729,896 + MPMX20_02591 0.81 -3.0 2,729,896 + MPMX20_02591 0.81 -2.8 2,729,896 + MPMX20_02591 0.81 -2.2 2,729,896 + MPMX20_02591 0.81 -1.0 2,729,896 + MPMX20_02591 0.81 -0.3 2,729,902 + MPMX20_02591 0.83 -1.2 2,729,902 + MPMX20_02591 0.83 +0.5 2,729,902 + MPMX20_02591 0.83 -1.8 2,729,902 + MPMX20_02591 0.83 -3.9 2,729,902 + MPMX20_02591 0.83 -1.1 2,729,902 + MPMX20_02591 0.83 -2.8 2,729,902 + MPMX20_02591 0.83 -3.8 2,729,902 + MPMX20_02591 0.83 -1.3 2,729,938 + -2.1 2,729,938 + -2.0 2,729,938 + -2.6 2,729,948 + +1.4 2,729,966 + -0.2 2,729,974 - +0.8 2,729,991 + -0.6 2,730,037 + +0.3 2,730,041 + +0.8 2,730,041 + -0.2 2,730,041 + +0.2 2,730,041 + -1.3 2,730,041 + -1.0 2,730,041 + +0.6 2,730,041 + -0.1 2,730,041 + -0.1 2,730,041 + -0.7 2,730,041 + -0.9 2,730,041 + +0.4 2,730,041 + +0.2 2,730,041 + -0.8 2,730,041 + -0.5 2,730,041 + -0.1 2,730,041 + -1.5 2,730,041 + -0.2 2,730,041 + +0.5 2,730,041 + -0.2 2,730,049 - -0.1 2,730,049 - -0.4 2,730,049 - -0.6 2,730,049 - +0.5 2,730,049 - +0.6 2,730,049 - -1.1 2,730,049 - +2.0 2,730,049 - -0.7 2,730,049 - -0.5 2,730,049 - -0.1 2,730,049 - -1.4 2,730,049 - -0.5 2,730,049 - -3.5 2,730,049 - -0.8 2,730,049 - -0.3 2,730,049 - +0.4 2,730,049 - -0.2 2,730,049 - -0.8 2,730,049 - -1.4 2,730,049 - +0.3 2,730,049 - -1.5 2,730,049 - -0.5 2,730,049 - +0.4 2,730,049 - -1.3 2,730,053 + -1.2 2,730,061 - -2.2 2,730,061 - +0.3 2,730,105 - -0.6 2,730,111 + +0.4 2,730,135 + -1.3 2,730,142 - -0.3 2,730,142 - +0.1 2,730,142 - +0.6 2,730,142 - +0.7 2,730,143 - +0.8 2,730,143 - +0.4 2,730,147 - +0.1 2,730,150 + +0.5 2,730,150 + -2.4 2,730,155 + +0.5 2,730,160 + +0.1 2,730,163 - +0.8 2,730,163 - +0.0 2,730,163 - -1.1 2,730,163 - -0.5 2,730,168 - +0.0 2,730,168 - +0.2 2,730,202 - +0.5 2,730,204 - -2.2 2,730,204 - -0.2
Or see this region's nucleotide sequence