Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02304 and MPMX20_02305 are separated by 275 nucleotides MPMX20_02305 and MPMX20_02306 are separated by 156 nucleotides
MPMX20_02304: MPMX20_02304 - hypothetical protein, at 2,424,293 to 2,425,333
_02304
MPMX20_02305: MPMX20_02305 - hypothetical protein, at 2,425,609 to 2,425,863
_02305
MPMX20_02306: MPMX20_02306 - hypothetical protein, at 2,426,020 to 2,426,985
_02306
Position (kb)
2425
2426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2424.686 kb on - strand, within MPMX20_02304 at 2424.715 kb on - strand, within MPMX20_02304 at 2424.743 kb on - strand, within MPMX20_02304 at 2424.794 kb on - strand, within MPMX20_02304 at 2424.809 kb on - strand, within MPMX20_02304 at 2424.809 kb on - strand, within MPMX20_02304 at 2424.815 kb on - strand, within MPMX20_02304 at 2424.815 kb on - strand, within MPMX20_02304 at 2424.831 kb on - strand, within MPMX20_02304 at 2424.831 kb on - strand, within MPMX20_02304 at 2424.831 kb on - strand, within MPMX20_02304 at 2424.831 kb on - strand, within MPMX20_02304 at 2424.850 kb on - strand, within MPMX20_02304 at 2424.850 kb on - strand, within MPMX20_02304 at 2424.850 kb on - strand, within MPMX20_02304 at 2424.879 kb on - strand, within MPMX20_02304 at 2424.893 kb on - strand, within MPMX20_02304 at 2425.064 kb on + strand, within MPMX20_02304 at 2425.117 kb on - strand, within MPMX20_02304 at 2425.166 kb on - strand, within MPMX20_02304 at 2425.191 kb on - strand, within MPMX20_02304 at 2425.191 kb on - strand, within MPMX20_02304 at 2425.196 kb on - strand, within MPMX20_02304 at 2425.198 kb on - strand, within MPMX20_02304 at 2425.208 kb on + strand, within MPMX20_02304 at 2425.254 kb on + strand at 2425.267 kb on + strand at 2425.267 kb on + strand at 2425.267 kb on + strand at 2425.267 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.277 kb on + strand at 2425.280 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.287 kb on + strand at 2425.292 kb on + strand at 2425.321 kb on + strand at 2425.321 kb on + strand at 2425.321 kb on + strand at 2425.321 kb on + strand at 2425.335 kb on + strand at 2425.335 kb on + strand at 2425.335 kb on + strand at 2425.339 kb on + strand at 2425.451 kb on - strand at 2425.603 kb on - strand at 2425.649 kb on - strand, within MPMX20_02305 at 2425.721 kb on - strand, within MPMX20_02305 at 2425.724 kb on - strand, within MPMX20_02305 at 2425.724 kb on - strand, within MPMX20_02305 at 2425.724 kb on - strand, within MPMX20_02305 at 2425.729 kb on - strand, within MPMX20_02305 at 2425.860 kb on + strand at 2425.906 kb on + strand at 2425.910 kb on + strand at 2425.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 2,424,686 - MPMX20_02304 0.38 +0.2 2,424,715 - MPMX20_02304 0.41 -0.9 2,424,743 - MPMX20_02304 0.43 -0.4 2,424,794 - MPMX20_02304 0.48 +0.2 2,424,809 - MPMX20_02304 0.50 +0.7 2,424,809 - MPMX20_02304 0.50 +0.0 2,424,815 - MPMX20_02304 0.50 -0.5 2,424,815 - MPMX20_02304 0.50 -0.6 2,424,831 - MPMX20_02304 0.52 -0.2 2,424,831 - MPMX20_02304 0.52 -0.4 2,424,831 - MPMX20_02304 0.52 +0.6 2,424,831 - MPMX20_02304 0.52 -1.5 2,424,850 - MPMX20_02304 0.54 +1.4 2,424,850 - MPMX20_02304 0.54 -1.4 2,424,850 - MPMX20_02304 0.54 -0.9 2,424,879 - MPMX20_02304 0.56 +2.2 2,424,893 - MPMX20_02304 0.58 -2.4 2,425,064 + MPMX20_02304 0.74 +1.1 2,425,117 - MPMX20_02304 0.79 +2.0 2,425,166 - MPMX20_02304 0.84 -1.5 2,425,191 - MPMX20_02304 0.86 +1.4 2,425,191 - MPMX20_02304 0.86 -0.5 2,425,196 - MPMX20_02304 0.87 +1.4 2,425,198 - MPMX20_02304 0.87 +0.1 2,425,208 + MPMX20_02304 0.88 +0.0 2,425,254 + -0.2 2,425,267 + -0.8 2,425,267 + -0.8 2,425,267 + +0.2 2,425,267 + +1.4 2,425,277 + +0.8 2,425,277 + -1.2 2,425,277 + +0.8 2,425,277 + -0.2 2,425,277 + +0.1 2,425,277 + +0.0 2,425,277 + -2.2 2,425,277 + -0.2 2,425,277 + +0.8 2,425,277 + -2.2 2,425,280 + -0.8 2,425,287 + +0.8 2,425,287 + +0.4 2,425,287 + -0.1 2,425,287 + +0.8 2,425,287 + +0.8 2,425,287 + -0.3 2,425,287 + +0.8 2,425,287 + +1.4 2,425,287 + +1.8 2,425,287 + -0.3 2,425,287 + -1.6 2,425,287 + -0.8 2,425,287 + -0.6 2,425,287 + -0.6 2,425,287 + -0.6 2,425,287 + +0.4 2,425,287 + -0.2 2,425,287 + -1.9 2,425,287 + +0.2 2,425,292 + -1.0 2,425,321 + -0.2 2,425,321 + -0.2 2,425,321 + -0.2 2,425,321 + -0.6 2,425,335 + -1.6 2,425,335 + -1.2 2,425,335 + -0.8 2,425,339 + -1.9 2,425,451 - -0.5 2,425,603 - -1.3 2,425,649 - MPMX20_02305 0.16 -0.5 2,425,721 - MPMX20_02305 0.44 -0.9 2,425,724 - MPMX20_02305 0.45 -0.4 2,425,724 - MPMX20_02305 0.45 -0.5 2,425,724 - MPMX20_02305 0.45 -2.6 2,425,729 - MPMX20_02305 0.47 -1.6 2,425,860 + -0.7 2,425,906 + -0.6 2,425,910 + +2.1 2,425,927 + +0.1
Or see this region's nucleotide sequence