Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01949 and MPMX20_01950 are separated by 60 nucleotides MPMX20_01950 and MPMX20_01951 are separated by 310 nucleotides
MPMX20_01949: MPMX20_01949 - putative L,D-transpeptidase YnhG, at 2,044,864 to 2,045,877
_01949
MPMX20_01950: MPMX20_01950 - Major outer membrane lipoprotein Lpp 1, at 2,045,938 to 2,046,174
_01950
MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897
_01951
Position (kb)
2045
2046
2047 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2044.943 kb on - strand at 2044.994 kb on - strand, within MPMX20_01949 at 2045.006 kb on - strand, within MPMX20_01949 at 2045.014 kb on + strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.050 kb on - strand, within MPMX20_01949 at 2045.055 kb on - strand, within MPMX20_01949 at 2045.090 kb on + strand, within MPMX20_01949 at 2045.093 kb on - strand, within MPMX20_01949 at 2045.093 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.098 kb on - strand, within MPMX20_01949 at 2045.117 kb on - strand, within MPMX20_01949 at 2045.152 kb on - strand, within MPMX20_01949 at 2045.152 kb on - strand, within MPMX20_01949 at 2045.161 kb on + strand, within MPMX20_01949 at 2045.161 kb on + strand, within MPMX20_01949 at 2045.169 kb on - strand, within MPMX20_01949 at 2045.192 kb on - strand, within MPMX20_01949 at 2045.270 kb on + strand, within MPMX20_01949 at 2045.309 kb on + strand, within MPMX20_01949 at 2045.309 kb on + strand, within MPMX20_01949 at 2045.317 kb on - strand, within MPMX20_01949 at 2045.317 kb on - strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.336 kb on + strand, within MPMX20_01949 at 2045.367 kb on + strand, within MPMX20_01949 at 2045.375 kb on - strand, within MPMX20_01949 at 2045.465 kb on + strand, within MPMX20_01949 at 2045.575 kb on + strand, within MPMX20_01949 at 2045.645 kb on - strand, within MPMX20_01949 at 2045.678 kb on + strand, within MPMX20_01949 at 2045.714 kb on - strand, within MPMX20_01949 at 2045.722 kb on - strand, within MPMX20_01949 at 2045.805 kb on - strand at 2045.818 kb on - strand at 2045.823 kb on - strand at 2045.858 kb on + strand at 2045.874 kb on + strand at 2045.880 kb on + strand at 2045.880 kb on + strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2046.003 kb on - strand, within MPMX20_01950 at 2046.003 kb on - strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.126 kb on + strand, within MPMX20_01950 at 2046.134 kb on - strand, within MPMX20_01950 at 2046.136 kb on - strand, within MPMX20_01950 at 2046.138 kb on + strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.146 kb on - strand, within MPMX20_01950 at 2046.167 kb on - strand at 2046.184 kb on + strand at 2046.192 kb on - strand at 2046.194 kb on + strand at 2046.194 kb on + strand at 2046.197 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.202 kb on - strand at 2046.204 kb on + strand at 2046.220 kb on + strand at 2046.220 kb on + strand at 2046.220 kb on + strand at 2046.228 kb on - strand at 2046.228 kb on - strand at 2046.263 kb on + strand at 2046.263 kb on + strand at 2046.499 kb on - strand at 2046.501 kb on + strand at 2046.515 kb on - strand at 2046.515 kb on - strand at 2046.515 kb on - strand at 2046.572 kb on - strand at 2046.673 kb on + strand, within MPMX20_01951 at 2046.868 kb on + strand, within MPMX20_01951 at 2046.973 kb on - strand, within MPMX20_01951 at 2046.973 kb on - strand, within MPMX20_01951 at 2047.071 kb on - strand, within MPMX20_01951 at 2047.079 kb on - strand, within MPMX20_01951 at 2047.100 kb on - strand, within MPMX20_01951
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 2,044,943 - -0.1 2,044,994 - MPMX20_01949 0.13 +0.1 2,045,006 - MPMX20_01949 0.14 -0.8 2,045,014 + MPMX20_01949 0.15 +0.6 2,045,050 - MPMX20_01949 0.18 +0.0 2,045,050 - MPMX20_01949 0.18 -0.3 2,045,050 - MPMX20_01949 0.18 +0.5 2,045,050 - MPMX20_01949 0.18 +0.4 2,045,055 - MPMX20_01949 0.19 +0.3 2,045,090 + MPMX20_01949 0.22 -0.1 2,045,093 - MPMX20_01949 0.23 +0.5 2,045,093 - MPMX20_01949 0.23 +0.3 2,045,098 - MPMX20_01949 0.23 +0.1 2,045,098 - MPMX20_01949 0.23 +0.1 2,045,098 - MPMX20_01949 0.23 -1.8 2,045,098 - MPMX20_01949 0.23 -0.4 2,045,117 - MPMX20_01949 0.25 -0.4 2,045,152 - MPMX20_01949 0.28 -0.7 2,045,152 - MPMX20_01949 0.28 -0.5 2,045,161 + MPMX20_01949 0.29 -0.2 2,045,161 + MPMX20_01949 0.29 -0.7 2,045,169 - MPMX20_01949 0.30 -0.4 2,045,192 - MPMX20_01949 0.32 +0.2 2,045,270 + MPMX20_01949 0.40 -0.7 2,045,309 + MPMX20_01949 0.44 +0.4 2,045,309 + MPMX20_01949 0.44 -0.3 2,045,317 - MPMX20_01949 0.45 -0.9 2,045,317 - MPMX20_01949 0.45 +0.6 2,045,336 + MPMX20_01949 0.47 -1.5 2,045,336 + MPMX20_01949 0.47 +0.3 2,045,336 + MPMX20_01949 0.47 +0.1 2,045,367 + MPMX20_01949 0.50 -0.4 2,045,375 - MPMX20_01949 0.50 +0.5 2,045,465 + MPMX20_01949 0.59 +0.7 2,045,575 + MPMX20_01949 0.70 -0.4 2,045,645 - MPMX20_01949 0.77 +1.0 2,045,678 + MPMX20_01949 0.80 +0.1 2,045,714 - MPMX20_01949 0.84 -0.3 2,045,722 - MPMX20_01949 0.85 +0.2 2,045,805 - -0.5 2,045,818 - +0.3 2,045,823 - -0.4 2,045,858 + -0.5 2,045,874 + +0.5 2,045,880 + +0.0 2,045,880 + -0.2 2,045,955 - -1.5 2,045,955 - -4.3 2,046,003 - MPMX20_01950 0.27 -4.0 2,046,003 - MPMX20_01950 0.27 -4.2 2,046,126 + MPMX20_01950 0.79 -2.9 2,046,126 + MPMX20_01950 0.79 -3.0 2,046,126 + MPMX20_01950 0.79 -3.6 2,046,134 - MPMX20_01950 0.83 -6.3 2,046,136 - MPMX20_01950 0.84 -5.3 2,046,138 + MPMX20_01950 0.84 -4.2 2,046,146 - MPMX20_01950 0.88 -3.7 2,046,146 - MPMX20_01950 0.88 -3.5 2,046,146 - MPMX20_01950 0.88 -5.6 2,046,167 - -7.0 2,046,184 + -3.5 2,046,192 - -7.0 2,046,194 + -4.1 2,046,194 + -4.8 2,046,197 - -4.0 2,046,202 - -5.8 2,046,202 - -5.6 2,046,202 - -3.7 2,046,202 - -4.0 2,046,204 + -4.0 2,046,220 + -6.0 2,046,220 + -5.4 2,046,220 + -4.6 2,046,228 - -5.0 2,046,228 - -7.1 2,046,263 + -0.6 2,046,263 + -0.8 2,046,499 - +0.8 2,046,501 + -0.2 2,046,515 - -1.2 2,046,515 - +0.4 2,046,515 - -1.0 2,046,572 - -0.4 2,046,673 + MPMX20_01951 0.13 -0.6 2,046,868 + MPMX20_01951 0.27 -3.5 2,046,973 - MPMX20_01951 0.35 +0.8 2,046,973 - MPMX20_01951 0.35 +0.1 2,047,071 - MPMX20_01951 0.41 -1.6 2,047,079 - MPMX20_01951 0.42 -3.2 2,047,100 - MPMX20_01951 0.44 -0.9
Or see this region's nucleotide sequence