Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01950

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01949 and MPMX20_01950 are separated by 60 nucleotidesMPMX20_01950 and MPMX20_01951 are separated by 310 nucleotides MPMX20_01949: MPMX20_01949 - putative L,D-transpeptidase YnhG, at 2,044,864 to 2,045,877 _01949 MPMX20_01950: MPMX20_01950 - Major outer membrane lipoprotein Lpp 1, at 2,045,938 to 2,046,174 _01950 MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897 _01951 Position (kb) 2045 2046 2047Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2044.943 kb on - strandat 2044.994 kb on - strand, within MPMX20_01949at 2045.006 kb on - strand, within MPMX20_01949at 2045.014 kb on + strand, within MPMX20_01949at 2045.050 kb on - strand, within MPMX20_01949at 2045.050 kb on - strand, within MPMX20_01949at 2045.050 kb on - strand, within MPMX20_01949at 2045.050 kb on - strand, within MPMX20_01949at 2045.055 kb on - strand, within MPMX20_01949at 2045.090 kb on + strand, within MPMX20_01949at 2045.093 kb on - strand, within MPMX20_01949at 2045.093 kb on - strand, within MPMX20_01949at 2045.098 kb on - strand, within MPMX20_01949at 2045.098 kb on - strand, within MPMX20_01949at 2045.098 kb on - strand, within MPMX20_01949at 2045.098 kb on - strand, within MPMX20_01949at 2045.117 kb on - strand, within MPMX20_01949at 2045.152 kb on - strand, within MPMX20_01949at 2045.152 kb on - strand, within MPMX20_01949at 2045.161 kb on + strand, within MPMX20_01949at 2045.161 kb on + strand, within MPMX20_01949at 2045.169 kb on - strand, within MPMX20_01949at 2045.192 kb on - strand, within MPMX20_01949at 2045.270 kb on + strand, within MPMX20_01949at 2045.309 kb on + strand, within MPMX20_01949at 2045.309 kb on + strand, within MPMX20_01949at 2045.317 kb on - strand, within MPMX20_01949at 2045.317 kb on - strand, within MPMX20_01949at 2045.336 kb on + strand, within MPMX20_01949at 2045.336 kb on + strand, within MPMX20_01949at 2045.336 kb on + strand, within MPMX20_01949at 2045.367 kb on + strand, within MPMX20_01949at 2045.375 kb on - strand, within MPMX20_01949at 2045.465 kb on + strand, within MPMX20_01949at 2045.575 kb on + strand, within MPMX20_01949at 2045.645 kb on - strand, within MPMX20_01949at 2045.678 kb on + strand, within MPMX20_01949at 2045.714 kb on - strand, within MPMX20_01949at 2045.722 kb on - strand, within MPMX20_01949at 2045.805 kb on - strandat 2045.818 kb on - strandat 2045.823 kb on - strandat 2045.858 kb on + strandat 2045.874 kb on + strandat 2045.880 kb on + strandat 2045.880 kb on + strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2046.003 kb on - strand, within MPMX20_01950at 2046.003 kb on - strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.134 kb on - strand, within MPMX20_01950at 2046.136 kb on - strand, within MPMX20_01950at 2046.138 kb on + strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.167 kb on - strandat 2046.184 kb on + strandat 2046.192 kb on - strandat 2046.194 kb on + strandat 2046.194 kb on + strandat 2046.197 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.204 kb on + strandat 2046.220 kb on + strandat 2046.220 kb on + strandat 2046.220 kb on + strandat 2046.228 kb on - strandat 2046.228 kb on - strandat 2046.263 kb on + strandat 2046.263 kb on + strandat 2046.499 kb on - strandat 2046.501 kb on + strandat 2046.515 kb on - strandat 2046.515 kb on - strandat 2046.515 kb on - strandat 2046.572 kb on - strandat 2046.673 kb on + strand, within MPMX20_01951at 2046.868 kb on + strand, within MPMX20_01951at 2046.973 kb on - strand, within MPMX20_01951at 2046.973 kb on - strand, within MPMX20_01951at 2047.071 kb on - strand, within MPMX20_01951at 2047.079 kb on - strand, within MPMX20_01951at 2047.100 kb on - strand, within MPMX20_01951

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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2,044,943 - -0.1
2,044,994 - MPMX20_01949 0.13 +0.1
2,045,006 - MPMX20_01949 0.14 -0.8
2,045,014 + MPMX20_01949 0.15 +0.6
2,045,050 - MPMX20_01949 0.18 +0.0
2,045,050 - MPMX20_01949 0.18 -0.3
2,045,050 - MPMX20_01949 0.18 +0.5
2,045,050 - MPMX20_01949 0.18 +0.4
2,045,055 - MPMX20_01949 0.19 +0.3
2,045,090 + MPMX20_01949 0.22 -0.1
2,045,093 - MPMX20_01949 0.23 +0.5
2,045,093 - MPMX20_01949 0.23 +0.3
2,045,098 - MPMX20_01949 0.23 +0.1
2,045,098 - MPMX20_01949 0.23 +0.1
2,045,098 - MPMX20_01949 0.23 -1.8
2,045,098 - MPMX20_01949 0.23 -0.4
2,045,117 - MPMX20_01949 0.25 -0.4
2,045,152 - MPMX20_01949 0.28 -0.7
2,045,152 - MPMX20_01949 0.28 -0.5
2,045,161 + MPMX20_01949 0.29 -0.2
2,045,161 + MPMX20_01949 0.29 -0.7
2,045,169 - MPMX20_01949 0.30 -0.4
2,045,192 - MPMX20_01949 0.32 +0.2
2,045,270 + MPMX20_01949 0.40 -0.7
2,045,309 + MPMX20_01949 0.44 +0.4
2,045,309 + MPMX20_01949 0.44 -0.3
2,045,317 - MPMX20_01949 0.45 -0.9
2,045,317 - MPMX20_01949 0.45 +0.6
2,045,336 + MPMX20_01949 0.47 -1.5
2,045,336 + MPMX20_01949 0.47 +0.3
2,045,336 + MPMX20_01949 0.47 +0.1
2,045,367 + MPMX20_01949 0.50 -0.4
2,045,375 - MPMX20_01949 0.50 +0.5
2,045,465 + MPMX20_01949 0.59 +0.7
2,045,575 + MPMX20_01949 0.70 -0.4
2,045,645 - MPMX20_01949 0.77 +1.0
2,045,678 + MPMX20_01949 0.80 +0.1
2,045,714 - MPMX20_01949 0.84 -0.3
2,045,722 - MPMX20_01949 0.85 +0.2
2,045,805 - -0.5
2,045,818 - +0.3
2,045,823 - -0.4
2,045,858 + -0.5
2,045,874 + +0.5
2,045,880 + +0.0
2,045,880 + -0.2
2,045,955 - -1.5
2,045,955 - -4.3
2,046,003 - MPMX20_01950 0.27 -4.0
2,046,003 - MPMX20_01950 0.27 -4.2
2,046,126 + MPMX20_01950 0.79 -2.9
2,046,126 + MPMX20_01950 0.79 -3.0
2,046,126 + MPMX20_01950 0.79 -3.6
2,046,134 - MPMX20_01950 0.83 -6.3
2,046,136 - MPMX20_01950 0.84 -5.3
2,046,138 + MPMX20_01950 0.84 -4.2
2,046,146 - MPMX20_01950 0.88 -3.7
2,046,146 - MPMX20_01950 0.88 -3.5
2,046,146 - MPMX20_01950 0.88 -5.6
2,046,167 - -7.0
2,046,184 + -3.5
2,046,192 - -7.0
2,046,194 + -4.1
2,046,194 + -4.8
2,046,197 - -4.0
2,046,202 - -5.8
2,046,202 - -5.6
2,046,202 - -3.7
2,046,202 - -4.0
2,046,204 + -4.0
2,046,220 + -6.0
2,046,220 + -5.4
2,046,220 + -4.6
2,046,228 - -5.0
2,046,228 - -7.1
2,046,263 + -0.6
2,046,263 + -0.8
2,046,499 - +0.8
2,046,501 + -0.2
2,046,515 - -1.2
2,046,515 - +0.4
2,046,515 - -1.0
2,046,572 - -0.4
2,046,673 + MPMX20_01951 0.13 -0.6
2,046,868 + MPMX20_01951 0.27 -3.5
2,046,973 - MPMX20_01951 0.35 +0.8
2,046,973 - MPMX20_01951 0.35 +0.1
2,047,071 - MPMX20_01951 0.41 -1.6
2,047,079 - MPMX20_01951 0.42 -3.2
2,047,100 - MPMX20_01951 0.44 -0.9

Or see this region's nucleotide sequence