Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01607

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01605 and MPMX20_01606 are separated by 186 nucleotidesMPMX20_01606 and MPMX20_01607 are separated by 69 nucleotidesMPMX20_01607 and MPMX20_01608 are separated by 354 nucleotides MPMX20_01605: MPMX20_01605 - Lon protease, at 1,696,857 to 1,698,617 _01605 MPMX20_01606: MPMX20_01606 - Macrodomain Ter protein, at 1,698,804 to 1,699,256 _01606 MPMX20_01607: MPMX20_01607 - Outer membrane protein A, at 1,699,326 to 1,700,381 _01607 MPMX20_01608: MPMX20_01608 - Cell division inhibitor SulA, at 1,700,736 to 1,701,299 _01608 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1698.430 kb on + strand, within MPMX20_01605at 1698.430 kb on + strand, within MPMX20_01605at 1698.438 kb on - strand, within MPMX20_01605at 1698.455 kb on - strandat 1698.465 kb on + strandat 1698.465 kb on - strandat 1698.466 kb on + strandat 1698.466 kb on + strandat 1698.473 kb on - strandat 1698.474 kb on - strandat 1698.484 kb on - strandat 1698.557 kb on + strandat 1698.557 kb on + strandat 1698.565 kb on - strandat 1698.612 kb on + strandat 1698.620 kb on - strandat 1698.646 kb on - strandat 1698.679 kb on - strandat 1698.703 kb on + strandat 1698.715 kb on - strandat 1698.728 kb on + strandat 1698.767 kb on + strandat 1698.785 kb on - strandat 1698.857 kb on + strand, within MPMX20_01606at 1698.889 kb on - strand, within MPMX20_01606at 1698.971 kb on - strand, within MPMX20_01606at 1698.986 kb on + strand, within MPMX20_01606at 1698.986 kb on + strand, within MPMX20_01606at 1698.986 kb on + strand, within MPMX20_01606at 1698.994 kb on - strand, within MPMX20_01606at 1698.994 kb on - strand, within MPMX20_01606at 1698.994 kb on - strand, within MPMX20_01606at 1699.095 kb on - strand, within MPMX20_01606at 1699.105 kb on + strand, within MPMX20_01606at 1699.125 kb on + strand, within MPMX20_01606at 1699.156 kb on + strand, within MPMX20_01606at 1699.196 kb on - strand, within MPMX20_01606at 1699.325 kb on - strandat 1699.412 kb on - strandat 1699.428 kb on - strandat 1699.509 kb on - strand, within MPMX20_01607at 1699.647 kb on - strand, within MPMX20_01607at 1699.986 kb on + strand, within MPMX20_01607at 1700.011 kb on - strand, within MPMX20_01607at 1700.031 kb on - strand, within MPMX20_01607at 1700.058 kb on - strand, within MPMX20_01607at 1700.087 kb on - strand, within MPMX20_01607at 1700.137 kb on - strand, within MPMX20_01607at 1700.139 kb on + strand, within MPMX20_01607at 1700.147 kb on - strand, within MPMX20_01607at 1700.175 kb on - strand, within MPMX20_01607at 1700.200 kb on - strand, within MPMX20_01607at 1700.227 kb on + strand, within MPMX20_01607at 1700.265 kb on - strand, within MPMX20_01607at 1700.327 kb on - strandat 1700.338 kb on + strandat 1700.346 kb on - strandat 1700.452 kb on - strandat 1700.485 kb on + strandat 1700.491 kb on + strandat 1700.498 kb on + strandat 1700.522 kb on + strandat 1700.530 kb on - strandat 1700.530 kb on - strandat 1700.530 kb on - strandat 1700.530 kb on - strandat 1700.530 kb on - strandat 1700.532 kb on - strandat 1700.548 kb on + strandat 1700.556 kb on - strandat 1700.556 kb on - strandat 1700.650 kb on + strandat 1700.650 kb on + strandat 1700.650 kb on + strandat 1700.658 kb on - strandat 1700.658 kb on - strandat 1700.774 kb on + strandat 1700.795 kb on - strand, within MPMX20_01608at 1700.832 kb on + strand, within MPMX20_01608at 1700.934 kb on + strand, within MPMX20_01608at 1700.991 kb on - strand, within MPMX20_01608at 1701.001 kb on + strand, within MPMX20_01608at 1701.001 kb on + strand, within MPMX20_01608at 1701.098 kb on + strand, within MPMX20_01608at 1701.147 kb on + strand, within MPMX20_01608at 1701.155 kb on - strand, within MPMX20_01608at 1701.155 kb on - strand, within MPMX20_01608at 1701.172 kb on + strand, within MPMX20_01608at 1701.180 kb on - strand, within MPMX20_01608at 1701.207 kb on + strand, within MPMX20_01608at 1701.207 kb on - strand, within MPMX20_01608at 1701.221 kb on + strand, within MPMX20_01608at 1701.240 kb on - strand, within MPMX20_01608at 1701.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,698,430 + MPMX20_01605 0.89 -0.1
1,698,430 + MPMX20_01605 0.89 +0.6
1,698,438 - MPMX20_01605 0.90 -0.5
1,698,455 - +0.0
1,698,465 + -1.0
1,698,465 - -0.6
1,698,466 + +0.3
1,698,466 + -0.0
1,698,473 - -0.8
1,698,474 - +0.5
1,698,484 - +0.5
1,698,557 + -0.5
1,698,557 + -0.1
1,698,565 - -0.9
1,698,612 + -1.2
1,698,620 - +0.1
1,698,646 - +0.7
1,698,679 - -0.1
1,698,703 + -0.8
1,698,715 - +0.8
1,698,728 + -1.9
1,698,767 + +0.1
1,698,785 - -0.1
1,698,857 + MPMX20_01606 0.12 -0.4
1,698,889 - MPMX20_01606 0.19 -1.7
1,698,971 - MPMX20_01606 0.37 +0.2
1,698,986 + MPMX20_01606 0.40 +0.3
1,698,986 + MPMX20_01606 0.40 -0.7
1,698,986 + MPMX20_01606 0.40 +0.0
1,698,994 - MPMX20_01606 0.42 +0.3
1,698,994 - MPMX20_01606 0.42 -0.2
1,698,994 - MPMX20_01606 0.42 +1.4
1,699,095 - MPMX20_01606 0.64 +1.1
1,699,105 + MPMX20_01606 0.66 +0.8
1,699,125 + MPMX20_01606 0.71 +0.2
1,699,156 + MPMX20_01606 0.78 +0.9
1,699,196 - MPMX20_01606 0.87 +0.2
1,699,325 - +1.3
1,699,412 - -2.4
1,699,428 - -2.4
1,699,509 - MPMX20_01607 0.17 -3.6
1,699,647 - MPMX20_01607 0.30 -1.4
1,699,986 + MPMX20_01607 0.62 -3.0
1,700,011 - MPMX20_01607 0.65 -1.5
1,700,031 - MPMX20_01607 0.67 -0.8
1,700,058 - MPMX20_01607 0.69 -3.3
1,700,087 - MPMX20_01607 0.72 -1.2
1,700,137 - MPMX20_01607 0.77 -3.4
1,700,139 + MPMX20_01607 0.77 -3.2
1,700,147 - MPMX20_01607 0.78 -3.9
1,700,175 - MPMX20_01607 0.80 -2.4
1,700,200 - MPMX20_01607 0.83 -3.2
1,700,227 + MPMX20_01607 0.85 -4.2
1,700,265 - MPMX20_01607 0.89 -2.3
1,700,327 - -2.1
1,700,338 + -3.2
1,700,346 - -5.0
1,700,452 - +0.3
1,700,485 + -1.0
1,700,491 + -2.2
1,700,498 + -3.9
1,700,522 + -2.2
1,700,530 - -0.1
1,700,530 - -0.7
1,700,530 - -0.8
1,700,530 - -0.6
1,700,530 - +0.2
1,700,532 - -0.9
1,700,548 + -0.7
1,700,556 - +0.5
1,700,556 - +0.3
1,700,650 + -0.3
1,700,650 + +0.0
1,700,650 + -1.1
1,700,658 - -0.1
1,700,658 - +0.7
1,700,774 + +0.3
1,700,795 - MPMX20_01608 0.10 -0.2
1,700,832 + MPMX20_01608 0.17 -1.3
1,700,934 + MPMX20_01608 0.35 -0.2
1,700,991 - MPMX20_01608 0.45 -1.6
1,701,001 + MPMX20_01608 0.47 -0.8
1,701,001 + MPMX20_01608 0.47 -0.7
1,701,098 + MPMX20_01608 0.64 -0.1
1,701,147 + MPMX20_01608 0.73 +0.3
1,701,155 - MPMX20_01608 0.74 +0.2
1,701,155 - MPMX20_01608 0.74 +0.5
1,701,172 + MPMX20_01608 0.77 +0.3
1,701,180 - MPMX20_01608 0.79 -1.2
1,701,207 + MPMX20_01608 0.84 +0.2
1,701,207 - MPMX20_01608 0.84 +0.3
1,701,221 + MPMX20_01608 0.86 +0.2
1,701,240 - MPMX20_01608 0.89 -1.1
1,701,345 + -0.1

Or see this region's nucleotide sequence