Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01570

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01569 and MPMX20_01570 are separated by 171 nucleotidesMPMX20_01570 and MPMX20_01571 are separated by 215 nucleotides MPMX20_01569: MPMX20_01569 - 30S ribosomal protein S1, at 1,649,882 to 1,651,555 _01569 MPMX20_01570: MPMX20_01570 - Integration host factor subunit beta, at 1,651,727 to 1,652,014 _01570 MPMX20_01571: MPMX20_01571 - hypothetical protein, at 1,652,230 to 1,654,494 _01571 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -3 -2 -1 0 1at 1651.522 kb on + strandat 1651.769 kb on + strand, within MPMX20_01570at 1651.777 kb on - strand, within MPMX20_01570at 1651.833 kb on + strand, within MPMX20_01570at 1651.833 kb on + strand, within MPMX20_01570at 1651.833 kb on + strand, within MPMX20_01570at 1652.195 kb on + strandat 1652.209 kb on + strandat 1652.209 kb on + strandat 1652.211 kb on - strandat 1652.217 kb on - strandat 1652.219 kb on + strandat 1652.227 kb on - strandat 1652.275 kb on + strandat 1652.304 kb on + strandat 1652.336 kb on + strandat 1652.512 kb on - strand, within MPMX20_01571at 1652.536 kb on + strand, within MPMX20_01571at 1652.541 kb on + strand, within MPMX20_01571at 1652.610 kb on + strand, within MPMX20_01571at 1652.610 kb on + strand, within MPMX20_01571at 1652.618 kb on - strand, within MPMX20_01571at 1652.686 kb on + strand, within MPMX20_01571at 1652.813 kb on + strand, within MPMX20_01571at 1652.842 kb on + strand, within MPMX20_01571at 1652.842 kb on + strand, within MPMX20_01571at 1652.843 kb on + strand, within MPMX20_01571at 1652.850 kb on - strand, within MPMX20_01571at 1652.851 kb on - strand, within MPMX20_01571

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
1,651,522 + -1.2
1,651,769 + MPMX20_01570 0.15 -0.9
1,651,777 - MPMX20_01570 0.17 +0.6
1,651,833 + MPMX20_01570 0.37 -0.7
1,651,833 + MPMX20_01570 0.37 -3.1
1,651,833 + MPMX20_01570 0.37 -2.4
1,652,195 + -1.9
1,652,209 + -0.3
1,652,209 + +0.4
1,652,211 - -0.2
1,652,217 - -0.0
1,652,219 + +0.2
1,652,227 - +0.5
1,652,275 + -0.2
1,652,304 + -0.1
1,652,336 + -0.7
1,652,512 - MPMX20_01571 0.12 -0.4
1,652,536 + MPMX20_01571 0.14 +0.3
1,652,541 + MPMX20_01571 0.14 +0.3
1,652,610 + MPMX20_01571 0.17 -1.9
1,652,610 + MPMX20_01571 0.17 -0.3
1,652,618 - MPMX20_01571 0.17 +0.3
1,652,686 + MPMX20_01571 0.20 +0.9
1,652,813 + MPMX20_01571 0.26 -0.0
1,652,842 + MPMX20_01571 0.27 -0.2
1,652,842 + MPMX20_01571 0.27 -0.1
1,652,843 + MPMX20_01571 0.27 -0.6
1,652,850 - MPMX20_01571 0.27 +0.4
1,652,851 - MPMX20_01571 0.27 +0.1

Or see this region's nucleotide sequence