Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01548 and MPMX20_01549 overlap by 1 nucleotides MPMX20_01549 and MPMX20_01550 are separated by 114 nucleotides
MPMX20_01548: MPMX20_01548 - putative ABC transporter ATP-binding/permease protein, at 1,619,770 to 1,621,491
_01548
MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257
_01549
MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367
_01550
Position (kb)
1621
1622
1623
1624 Strain fitness (log2 ratio)
-2
-1
0
1 at 1620.517 kb on - strand, within MPMX20_01548 at 1620.523 kb on - strand, within MPMX20_01548 at 1620.576 kb on + strand, within MPMX20_01548 at 1620.688 kb on + strand, within MPMX20_01548 at 1620.706 kb on - strand, within MPMX20_01548 at 1620.713 kb on - strand, within MPMX20_01548 at 1620.773 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1621.140 kb on - strand, within MPMX20_01548 at 1621.177 kb on + strand, within MPMX20_01548 at 1621.185 kb on - strand, within MPMX20_01548 at 1621.327 kb on + strand at 1621.397 kb on - strand at 1621.429 kb on + strand at 1621.482 kb on - strand at 1621.489 kb on + strand at 1621.636 kb on - strand at 1621.689 kb on - strand, within MPMX20_01549 at 1621.694 kb on + strand, within MPMX20_01549 at 1621.745 kb on + strand, within MPMX20_01549 at 1621.750 kb on + strand, within MPMX20_01549 at 1621.758 kb on - strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.788 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549 at 1622.504 kb on + strand, within MPMX20_01549 at 1622.534 kb on + strand, within MPMX20_01549 at 1622.534 kb on - strand, within MPMX20_01549 at 1622.540 kb on - strand, within MPMX20_01549 at 1622.881 kb on - strand, within MPMX20_01549 at 1622.913 kb on - strand, within MPMX20_01549 at 1623.053 kb on + strand, within MPMX20_01549 at 1623.150 kb on - strand at 1623.223 kb on - strand at 1623.228 kb on + strand at 1623.578 kb on - strand, within MPMX20_01550 at 1623.670 kb on + strand, within MPMX20_01550 at 1623.791 kb on - strand, within MPMX20_01550 at 1623.835 kb on - strand, within MPMX20_01550
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,620,517 - MPMX20_01548 0.43 -0.2 1,620,523 - MPMX20_01548 0.44 +0.8 1,620,576 + MPMX20_01548 0.47 -1.8 1,620,688 + MPMX20_01548 0.53 +0.8 1,620,706 - MPMX20_01548 0.54 -0.2 1,620,713 - MPMX20_01548 0.55 -0.2 1,620,773 - MPMX20_01548 0.58 +0.8 1,620,994 - MPMX20_01548 0.71 -0.2 1,620,994 - MPMX20_01548 0.71 +0.8 1,621,140 - MPMX20_01548 0.80 -1.8 1,621,177 + MPMX20_01548 0.82 -0.2 1,621,185 - MPMX20_01548 0.82 +0.8 1,621,327 + -0.8 1,621,397 - +0.8 1,621,429 + -1.2 1,621,482 - -0.2 1,621,489 + +0.5 1,621,636 - -0.2 1,621,689 - MPMX20_01549 0.11 +0.8 1,621,694 + MPMX20_01549 0.11 +0.8 1,621,745 + MPMX20_01549 0.14 -0.2 1,621,750 + MPMX20_01549 0.15 +0.8 1,621,758 - MPMX20_01549 0.15 -1.5 1,621,780 + MPMX20_01549 0.16 -0.2 1,621,780 + MPMX20_01549 0.16 -0.8 1,621,788 - MPMX20_01549 0.17 -1.2 1,622,212 - MPMX20_01549 0.41 +0.8 1,622,212 - MPMX20_01549 0.41 -0.5 1,622,504 + MPMX20_01549 0.57 +0.8 1,622,534 + MPMX20_01549 0.59 -0.8 1,622,534 - MPMX20_01549 0.59 -1.2 1,622,540 - MPMX20_01549 0.59 -0.2 1,622,881 - MPMX20_01549 0.79 +0.8 1,622,913 - MPMX20_01549 0.80 -0.8 1,623,053 + MPMX20_01549 0.88 +0.8 1,623,150 - -0.2 1,623,223 - -0.8 1,623,228 + -1.5 1,623,578 - MPMX20_01550 0.21 +0.1 1,623,670 + MPMX20_01550 0.30 -0.3 1,623,791 - MPMX20_01550 0.42 +0.2 1,623,835 - MPMX20_01550 0.46 -1.8
Or see this region's nucleotide sequence