Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01547 and MPMX20_01548 are separated by 46 nucleotides MPMX20_01548 and MPMX20_01549 overlap by 1 nucleotides
MPMX20_01547: MPMX20_01547 - Leucyl/phenylalanyl-tRNA--protein transferase, at 1,619,019 to 1,619,723
_01547
MPMX20_01548: MPMX20_01548 - putative ABC transporter ATP-binding/permease protein, at 1,619,770 to 1,621,491
_01548
MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257
_01549
Position (kb)
1619
1620
1621
1622 Strain fitness (log2 ratio)
-2
-1
0
1 at 1618.860 kb on + strand at 1618.860 kb on + strand at 1618.860 kb on + strand at 1618.860 kb on + strand at 1618.868 kb on - strand at 1618.868 kb on - strand at 1618.868 kb on - strand at 1618.868 kb on - strand at 1618.894 kb on + strand at 1618.902 kb on - strand at 1618.902 kb on - strand at 1618.902 kb on - strand at 1618.904 kb on + strand at 1618.912 kb on - strand at 1618.919 kb on - strand at 1618.938 kb on + strand at 1618.968 kb on - strand at 1618.973 kb on - strand at 1618.973 kb on - strand at 1618.973 kb on - strand at 1619.140 kb on + strand, within MPMX20_01547 at 1619.140 kb on + strand, within MPMX20_01547 at 1619.148 kb on - strand, within MPMX20_01547 at 1619.268 kb on - strand, within MPMX20_01547 at 1619.287 kb on + strand, within MPMX20_01547 at 1619.292 kb on - strand, within MPMX20_01547 at 1619.324 kb on + strand, within MPMX20_01547 at 1619.324 kb on + strand, within MPMX20_01547 at 1619.324 kb on + strand, within MPMX20_01547 at 1619.326 kb on + strand, within MPMX20_01547 at 1619.326 kb on + strand, within MPMX20_01547 at 1619.332 kb on - strand, within MPMX20_01547 at 1619.411 kb on + strand, within MPMX20_01547 at 1619.421 kb on + strand, within MPMX20_01547 at 1619.425 kb on + strand, within MPMX20_01547 at 1619.429 kb on - strand, within MPMX20_01547 at 1619.429 kb on - strand, within MPMX20_01547 at 1619.487 kb on - strand, within MPMX20_01547 at 1619.503 kb on + strand, within MPMX20_01547 at 1619.603 kb on - strand, within MPMX20_01547 at 1619.620 kb on + strand, within MPMX20_01547 at 1619.620 kb on + strand, within MPMX20_01547 at 1619.620 kb on + strand, within MPMX20_01547 at 1619.702 kb on - strand at 1619.702 kb on - strand at 1619.781 kb on + strand at 1619.789 kb on - strand at 1619.817 kb on + strand at 1619.903 kb on - strand at 1620.062 kb on + strand, within MPMX20_01548 at 1620.204 kb on + strand, within MPMX20_01548 at 1620.214 kb on + strand, within MPMX20_01548 at 1620.217 kb on - strand, within MPMX20_01548 at 1620.256 kb on - strand, within MPMX20_01548 at 1620.480 kb on - strand, within MPMX20_01548 at 1620.517 kb on - strand, within MPMX20_01548 at 1620.523 kb on - strand, within MPMX20_01548 at 1620.576 kb on + strand, within MPMX20_01548 at 1620.688 kb on + strand, within MPMX20_01548 at 1620.706 kb on - strand, within MPMX20_01548 at 1620.713 kb on - strand, within MPMX20_01548 at 1620.773 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1620.994 kb on - strand, within MPMX20_01548 at 1621.140 kb on - strand, within MPMX20_01548 at 1621.177 kb on + strand, within MPMX20_01548 at 1621.185 kb on - strand, within MPMX20_01548 at 1621.327 kb on + strand at 1621.397 kb on - strand at 1621.429 kb on + strand at 1621.482 kb on - strand at 1621.489 kb on + strand at 1621.636 kb on - strand at 1621.689 kb on - strand, within MPMX20_01549 at 1621.694 kb on + strand, within MPMX20_01549 at 1621.745 kb on + strand, within MPMX20_01549 at 1621.750 kb on + strand, within MPMX20_01549 at 1621.758 kb on - strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.780 kb on + strand, within MPMX20_01549 at 1621.788 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549 at 1622.212 kb on - strand, within MPMX20_01549
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,618,860 + -0.8 1,618,860 + -1.2 1,618,860 + -0.8 1,618,860 + +0.3 1,618,868 - -0.8 1,618,868 - +0.4 1,618,868 - -0.1 1,618,868 - -0.2 1,618,894 + -0.3 1,618,902 - -0.0 1,618,902 - -0.0 1,618,902 - +0.6 1,618,904 + -1.0 1,618,912 - -0.6 1,618,919 - -0.3 1,618,938 + +0.8 1,618,968 - +1.4 1,618,973 - -0.5 1,618,973 - -0.8 1,618,973 - -2.4 1,619,140 + MPMX20_01547 0.17 -0.5 1,619,140 + MPMX20_01547 0.17 -0.1 1,619,148 - MPMX20_01547 0.18 -1.0 1,619,268 - MPMX20_01547 0.35 +0.1 1,619,287 + MPMX20_01547 0.38 +1.1 1,619,292 - MPMX20_01547 0.39 -0.2 1,619,324 + MPMX20_01547 0.43 -0.0 1,619,324 + MPMX20_01547 0.43 -0.3 1,619,324 + MPMX20_01547 0.43 +0.8 1,619,326 + MPMX20_01547 0.44 -0.3 1,619,326 + MPMX20_01547 0.44 +0.8 1,619,332 - MPMX20_01547 0.44 +0.8 1,619,411 + MPMX20_01547 0.56 -0.2 1,619,421 + MPMX20_01547 0.57 +0.3 1,619,425 + MPMX20_01547 0.58 +0.9 1,619,429 - MPMX20_01547 0.58 +0.8 1,619,429 - MPMX20_01547 0.58 -0.0 1,619,487 - MPMX20_01547 0.66 +0.2 1,619,503 + MPMX20_01547 0.69 +0.3 1,619,603 - MPMX20_01547 0.83 +0.7 1,619,620 + MPMX20_01547 0.85 -0.0 1,619,620 + MPMX20_01547 0.85 -0.3 1,619,620 + MPMX20_01547 0.85 +0.8 1,619,702 - -0.1 1,619,702 - -0.8 1,619,781 + +1.0 1,619,789 - -0.3 1,619,817 + -1.2 1,619,903 - +0.8 1,620,062 + MPMX20_01548 0.17 -0.2 1,620,204 + MPMX20_01548 0.25 +0.8 1,620,214 + MPMX20_01548 0.26 -1.2 1,620,217 - MPMX20_01548 0.26 +0.8 1,620,256 - MPMX20_01548 0.28 -0.2 1,620,480 - MPMX20_01548 0.41 +0.8 1,620,517 - MPMX20_01548 0.43 -0.2 1,620,523 - MPMX20_01548 0.44 +0.8 1,620,576 + MPMX20_01548 0.47 -1.8 1,620,688 + MPMX20_01548 0.53 +0.8 1,620,706 - MPMX20_01548 0.54 -0.2 1,620,713 - MPMX20_01548 0.55 -0.2 1,620,773 - MPMX20_01548 0.58 +0.8 1,620,994 - MPMX20_01548 0.71 -0.2 1,620,994 - MPMX20_01548 0.71 +0.8 1,621,140 - MPMX20_01548 0.80 -1.8 1,621,177 + MPMX20_01548 0.82 -0.2 1,621,185 - MPMX20_01548 0.82 +0.8 1,621,327 + -0.8 1,621,397 - +0.8 1,621,429 + -1.2 1,621,482 - -0.2 1,621,489 + +0.5 1,621,636 - -0.2 1,621,689 - MPMX20_01549 0.11 +0.8 1,621,694 + MPMX20_01549 0.11 +0.8 1,621,745 + MPMX20_01549 0.14 -0.2 1,621,750 + MPMX20_01549 0.15 +0.8 1,621,758 - MPMX20_01549 0.15 -1.5 1,621,780 + MPMX20_01549 0.16 -0.2 1,621,780 + MPMX20_01549 0.16 -0.8 1,621,788 - MPMX20_01549 0.17 -1.2 1,622,212 - MPMX20_01549 0.41 +0.8 1,622,212 - MPMX20_01549 0.41 -0.5
Or see this region's nucleotide sequence