Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01548

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01547 and MPMX20_01548 are separated by 46 nucleotidesMPMX20_01548 and MPMX20_01549 overlap by 1 nucleotides MPMX20_01547: MPMX20_01547 - Leucyl/phenylalanyl-tRNA--protein transferase, at 1,619,019 to 1,619,723 _01547 MPMX20_01548: MPMX20_01548 - putative ABC transporter ATP-binding/permease protein, at 1,619,770 to 1,621,491 _01548 MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257 _01549 Position (kb) 1619 1620 1621 1622Strain fitness (log2 ratio) -2 -1 0 1at 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.894 kb on + strandat 1618.902 kb on - strandat 1618.902 kb on - strandat 1618.902 kb on - strandat 1618.904 kb on + strandat 1618.912 kb on - strandat 1618.919 kb on - strandat 1618.938 kb on + strandat 1618.968 kb on - strandat 1618.973 kb on - strandat 1618.973 kb on - strandat 1618.973 kb on - strandat 1619.140 kb on + strand, within MPMX20_01547at 1619.140 kb on + strand, within MPMX20_01547at 1619.148 kb on - strand, within MPMX20_01547at 1619.268 kb on - strand, within MPMX20_01547at 1619.287 kb on + strand, within MPMX20_01547at 1619.292 kb on - strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.326 kb on + strand, within MPMX20_01547at 1619.326 kb on + strand, within MPMX20_01547at 1619.332 kb on - strand, within MPMX20_01547at 1619.411 kb on + strand, within MPMX20_01547at 1619.421 kb on + strand, within MPMX20_01547at 1619.425 kb on + strand, within MPMX20_01547at 1619.429 kb on - strand, within MPMX20_01547at 1619.429 kb on - strand, within MPMX20_01547at 1619.487 kb on - strand, within MPMX20_01547at 1619.503 kb on + strand, within MPMX20_01547at 1619.603 kb on - strand, within MPMX20_01547at 1619.620 kb on + strand, within MPMX20_01547at 1619.620 kb on + strand, within MPMX20_01547at 1619.620 kb on + strand, within MPMX20_01547at 1619.702 kb on - strandat 1619.702 kb on - strandat 1619.781 kb on + strandat 1619.789 kb on - strandat 1619.817 kb on + strandat 1619.903 kb on - strandat 1620.062 kb on + strand, within MPMX20_01548at 1620.204 kb on + strand, within MPMX20_01548at 1620.214 kb on + strand, within MPMX20_01548at 1620.217 kb on - strand, within MPMX20_01548at 1620.256 kb on - strand, within MPMX20_01548at 1620.480 kb on - strand, within MPMX20_01548at 1620.517 kb on - strand, within MPMX20_01548at 1620.523 kb on - strand, within MPMX20_01548at 1620.576 kb on + strand, within MPMX20_01548at 1620.688 kb on + strand, within MPMX20_01548at 1620.706 kb on - strand, within MPMX20_01548at 1620.713 kb on - strand, within MPMX20_01548at 1620.773 kb on - strand, within MPMX20_01548at 1620.994 kb on - strand, within MPMX20_01548at 1620.994 kb on - strand, within MPMX20_01548at 1621.140 kb on - strand, within MPMX20_01548at 1621.177 kb on + strand, within MPMX20_01548at 1621.185 kb on - strand, within MPMX20_01548at 1621.327 kb on + strandat 1621.397 kb on - strandat 1621.429 kb on + strandat 1621.482 kb on - strandat 1621.489 kb on + strandat 1621.636 kb on - strandat 1621.689 kb on - strand, within MPMX20_01549at 1621.694 kb on + strand, within MPMX20_01549at 1621.745 kb on + strand, within MPMX20_01549at 1621.750 kb on + strand, within MPMX20_01549at 1621.758 kb on - strand, within MPMX20_01549at 1621.780 kb on + strand, within MPMX20_01549at 1621.780 kb on + strand, within MPMX20_01549at 1621.788 kb on - strand, within MPMX20_01549at 1622.212 kb on - strand, within MPMX20_01549at 1622.212 kb on - strand, within MPMX20_01549

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
1,618,860 + -0.8
1,618,860 + -1.2
1,618,860 + -0.8
1,618,860 + +0.3
1,618,868 - -0.8
1,618,868 - +0.4
1,618,868 - -0.1
1,618,868 - -0.2
1,618,894 + -0.3
1,618,902 - -0.0
1,618,902 - -0.0
1,618,902 - +0.6
1,618,904 + -1.0
1,618,912 - -0.6
1,618,919 - -0.3
1,618,938 + +0.8
1,618,968 - +1.4
1,618,973 - -0.5
1,618,973 - -0.8
1,618,973 - -2.4
1,619,140 + MPMX20_01547 0.17 -0.5
1,619,140 + MPMX20_01547 0.17 -0.1
1,619,148 - MPMX20_01547 0.18 -1.0
1,619,268 - MPMX20_01547 0.35 +0.1
1,619,287 + MPMX20_01547 0.38 +1.1
1,619,292 - MPMX20_01547 0.39 -0.2
1,619,324 + MPMX20_01547 0.43 -0.0
1,619,324 + MPMX20_01547 0.43 -0.3
1,619,324 + MPMX20_01547 0.43 +0.8
1,619,326 + MPMX20_01547 0.44 -0.3
1,619,326 + MPMX20_01547 0.44 +0.8
1,619,332 - MPMX20_01547 0.44 +0.8
1,619,411 + MPMX20_01547 0.56 -0.2
1,619,421 + MPMX20_01547 0.57 +0.3
1,619,425 + MPMX20_01547 0.58 +0.9
1,619,429 - MPMX20_01547 0.58 +0.8
1,619,429 - MPMX20_01547 0.58 -0.0
1,619,487 - MPMX20_01547 0.66 +0.2
1,619,503 + MPMX20_01547 0.69 +0.3
1,619,603 - MPMX20_01547 0.83 +0.7
1,619,620 + MPMX20_01547 0.85 -0.0
1,619,620 + MPMX20_01547 0.85 -0.3
1,619,620 + MPMX20_01547 0.85 +0.8
1,619,702 - -0.1
1,619,702 - -0.8
1,619,781 + +1.0
1,619,789 - -0.3
1,619,817 + -1.2
1,619,903 - +0.8
1,620,062 + MPMX20_01548 0.17 -0.2
1,620,204 + MPMX20_01548 0.25 +0.8
1,620,214 + MPMX20_01548 0.26 -1.2
1,620,217 - MPMX20_01548 0.26 +0.8
1,620,256 - MPMX20_01548 0.28 -0.2
1,620,480 - MPMX20_01548 0.41 +0.8
1,620,517 - MPMX20_01548 0.43 -0.2
1,620,523 - MPMX20_01548 0.44 +0.8
1,620,576 + MPMX20_01548 0.47 -1.8
1,620,688 + MPMX20_01548 0.53 +0.8
1,620,706 - MPMX20_01548 0.54 -0.2
1,620,713 - MPMX20_01548 0.55 -0.2
1,620,773 - MPMX20_01548 0.58 +0.8
1,620,994 - MPMX20_01548 0.71 -0.2
1,620,994 - MPMX20_01548 0.71 +0.8
1,621,140 - MPMX20_01548 0.80 -1.8
1,621,177 + MPMX20_01548 0.82 -0.2
1,621,185 - MPMX20_01548 0.82 +0.8
1,621,327 + -0.8
1,621,397 - +0.8
1,621,429 + -1.2
1,621,482 - -0.2
1,621,489 + +0.5
1,621,636 - -0.2
1,621,689 - MPMX20_01549 0.11 +0.8
1,621,694 + MPMX20_01549 0.11 +0.8
1,621,745 + MPMX20_01549 0.14 -0.2
1,621,750 + MPMX20_01549 0.15 +0.8
1,621,758 - MPMX20_01549 0.15 -1.5
1,621,780 + MPMX20_01549 0.16 -0.2
1,621,780 + MPMX20_01549 0.16 -0.8
1,621,788 - MPMX20_01549 0.17 -1.2
1,622,212 - MPMX20_01549 0.41 +0.8
1,622,212 - MPMX20_01549 0.41 -0.5

Or see this region's nucleotide sequence