Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01368

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01366 and MPMX20_01367 are separated by 3 nucleotidesMPMX20_01367 and MPMX20_01368 are separated by 28 nucleotidesMPMX20_01368 and MPMX20_01369 are separated by 130 nucleotides MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992 _01366 MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424 _01367 MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742 _01368 MPMX20_01369: MPMX20_01369 - Tol-Pal system protein TolB, at 1,435,873 to 1,437,165 _01369 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1433.483 kb on - strand, within MPMX20_01366at 1433.483 kb on - strand, within MPMX20_01366at 1433.725 kb on + strand, within MPMX20_01366at 1433.725 kb on + strand, within MPMX20_01366at 1433.775 kb on - strand, within MPMX20_01366at 1433.797 kb on - strand, within MPMX20_01366at 1433.870 kb on + strand, within MPMX20_01366at 1433.878 kb on - strand, within MPMX20_01366at 1433.879 kb on + strand, within MPMX20_01366at 1433.880 kb on + strand, within MPMX20_01366at 1433.987 kb on + strandat 1433.995 kb on - strandat 1434.041 kb on - strand, within MPMX20_01367at 1434.108 kb on + strand, within MPMX20_01367at 1434.197 kb on - strand, within MPMX20_01367at 1434.204 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.250 kb on + strand, within MPMX20_01367at 1434.265 kb on + strand, within MPMX20_01367at 1434.265 kb on + strand, within MPMX20_01367at 1434.287 kb on + strand, within MPMX20_01367at 1434.370 kb on - strand, within MPMX20_01367at 1434.490 kb on - strandat 1434.490 kb on - strandat 1434.539 kb on + strandat 1434.678 kb on - strand, within MPMX20_01368at 1434.726 kb on - strand, within MPMX20_01368at 1434.765 kb on - strand, within MPMX20_01368at 1434.861 kb on + strand, within MPMX20_01368at 1434.912 kb on + strand, within MPMX20_01368at 1434.985 kb on - strand, within MPMX20_01368at 1435.161 kb on + strand, within MPMX20_01368at 1435.370 kb on - strand, within MPMX20_01368at 1435.450 kb on - strand, within MPMX20_01368at 1435.518 kb on + strand, within MPMX20_01368at 1435.620 kb on - strandat 1435.620 kb on - strandat 1435.620 kb on - strandat 1435.627 kb on + strandat 1435.655 kb on - strandat 1435.655 kb on - strandat 1435.655 kb on - strandat 1435.747 kb on - strandat 1435.775 kb on + strandat 1435.851 kb on - strandat 1435.851 kb on - strandat 1435.977 kb on + strandat 1436.058 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.189 kb on - strand, within MPMX20_01369at 1436.189 kb on - strand, within MPMX20_01369at 1436.308 kb on - strand, within MPMX20_01369at 1436.353 kb on + strand, within MPMX20_01369at 1436.388 kb on + strand, within MPMX20_01369at 1436.388 kb on + strand, within MPMX20_01369at 1436.391 kb on - strand, within MPMX20_01369at 1436.396 kb on - strand, within MPMX20_01369at 1436.411 kb on - strand, within MPMX20_01369at 1436.426 kb on - strand, within MPMX20_01369at 1436.456 kb on - strand, within MPMX20_01369at 1436.478 kb on + strand, within MPMX20_01369at 1436.490 kb on - strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.512 kb on - strand, within MPMX20_01369at 1436.512 kb on - strand, within MPMX20_01369at 1436.545 kb on + strand, within MPMX20_01369at 1436.610 kb on - strand, within MPMX20_01369at 1436.658 kb on + strand, within MPMX20_01369at 1436.666 kb on - strand, within MPMX20_01369at 1436.680 kb on - strand, within MPMX20_01369

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,433,483 - MPMX20_01366 0.26 -3.0
1,433,483 - MPMX20_01366 0.26 -1.2
1,433,725 + MPMX20_01366 0.61 -2.0
1,433,725 + MPMX20_01366 0.61 -3.2
1,433,775 - MPMX20_01366 0.69 -1.1
1,433,797 - MPMX20_01366 0.72 -2.5
1,433,870 + MPMX20_01366 0.82 -1.6
1,433,878 - MPMX20_01366 0.83 -1.9
1,433,879 + MPMX20_01366 0.84 -2.5
1,433,880 + MPMX20_01366 0.84 -3.5
1,433,987 + +0.5
1,433,995 - +0.5
1,434,041 - MPMX20_01367 0.10 -1.6
1,434,108 + MPMX20_01367 0.26 -2.7
1,434,197 - MPMX20_01367 0.47 -2.0
1,434,204 + MPMX20_01367 0.48 -2.4
1,434,209 + MPMX20_01367 0.50 -2.1
1,434,209 + MPMX20_01367 0.50 -2.8
1,434,209 + MPMX20_01367 0.50 -2.4
1,434,209 + MPMX20_01367 0.50 -2.5
1,434,209 + MPMX20_01367 0.50 -1.8
1,434,217 - MPMX20_01367 0.52 -2.6
1,434,217 - MPMX20_01367 0.52 -3.7
1,434,217 - MPMX20_01367 0.52 -0.5
1,434,217 - MPMX20_01367 0.52 -2.0
1,434,217 - MPMX20_01367 0.52 -3.6
1,434,250 + MPMX20_01367 0.59 -3.8
1,434,265 + MPMX20_01367 0.63 -3.3
1,434,265 + MPMX20_01367 0.63 -2.3
1,434,287 + MPMX20_01367 0.68 -4.0
1,434,370 - MPMX20_01367 0.87 -1.6
1,434,490 - -0.4
1,434,490 - -1.8
1,434,539 + -2.4
1,434,678 - MPMX20_01368 0.17 -5.1
1,434,726 - MPMX20_01368 0.21 -3.0
1,434,765 - MPMX20_01368 0.24 -1.9
1,434,861 + MPMX20_01368 0.32 -4.0
1,434,912 + MPMX20_01368 0.36 -2.8
1,434,985 - MPMX20_01368 0.41 -1.4
1,435,161 + MPMX20_01368 0.55 -3.2
1,435,370 - MPMX20_01368 0.71 -2.3
1,435,450 - MPMX20_01368 0.77 -1.6
1,435,518 + MPMX20_01368 0.83 -1.5
1,435,620 - -1.5
1,435,620 - -2.3
1,435,620 - -2.6
1,435,627 + -1.5
1,435,655 - -3.4
1,435,655 - -0.8
1,435,655 - -0.9
1,435,747 - -1.5
1,435,775 + +0.1
1,435,851 - +0.3
1,435,851 - +0.1
1,435,977 + -2.6
1,436,058 + MPMX20_01369 0.14 -1.2
1,436,181 + MPMX20_01369 0.24 -2.0
1,436,181 + MPMX20_01369 0.24 -2.6
1,436,181 + MPMX20_01369 0.24 -2.9
1,436,189 - MPMX20_01369 0.24 -3.3
1,436,189 - MPMX20_01369 0.24 -2.1
1,436,308 - MPMX20_01369 0.34 -2.7
1,436,353 + MPMX20_01369 0.37 -1.9
1,436,388 + MPMX20_01369 0.40 -2.5
1,436,388 + MPMX20_01369 0.40 -3.0
1,436,391 - MPMX20_01369 0.40 -2.5
1,436,396 - MPMX20_01369 0.40 -2.0
1,436,411 - MPMX20_01369 0.42 -0.3
1,436,426 - MPMX20_01369 0.43 -2.7
1,436,456 - MPMX20_01369 0.45 -3.5
1,436,478 + MPMX20_01369 0.47 -1.6
1,436,490 - MPMX20_01369 0.48 -1.7
1,436,504 + MPMX20_01369 0.49 -3.6
1,436,504 + MPMX20_01369 0.49 -4.6
1,436,504 + MPMX20_01369 0.49 -2.4
1,436,504 + MPMX20_01369 0.49 -1.9
1,436,504 + MPMX20_01369 0.49 -1.6
1,436,512 - MPMX20_01369 0.49 -1.9
1,436,512 - MPMX20_01369 0.49 -0.8
1,436,545 + MPMX20_01369 0.52 -2.7
1,436,610 - MPMX20_01369 0.57 -1.5
1,436,658 + MPMX20_01369 0.61 -1.3
1,436,666 - MPMX20_01369 0.61 -1.0
1,436,680 - MPMX20_01369 0.62 -1.9

Or see this region's nucleotide sequence