Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01366 and MPMX20_01367 are separated by 3 nucleotides MPMX20_01367 and MPMX20_01368 are separated by 28 nucleotides MPMX20_01368 and MPMX20_01369 are separated by 130 nucleotides
MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992
_01366
MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424
_01367
MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742
_01368
MPMX20_01369: MPMX20_01369 - Tol-Pal system protein TolB, at 1,435,873 to 1,437,165
_01369
Position (kb)
1434
1435
1436 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1433.483 kb on - strand, within MPMX20_01366 at 1433.483 kb on - strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.775 kb on - strand, within MPMX20_01366 at 1433.797 kb on - strand, within MPMX20_01366 at 1433.870 kb on + strand, within MPMX20_01366 at 1433.878 kb on - strand, within MPMX20_01366 at 1433.879 kb on + strand, within MPMX20_01366 at 1433.880 kb on + strand, within MPMX20_01366 at 1433.987 kb on + strand at 1433.995 kb on - strand at 1434.041 kb on - strand, within MPMX20_01367 at 1434.108 kb on + strand, within MPMX20_01367 at 1434.197 kb on - strand, within MPMX20_01367 at 1434.204 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.250 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.287 kb on + strand, within MPMX20_01367 at 1434.370 kb on - strand, within MPMX20_01367 at 1434.490 kb on - strand at 1434.490 kb on - strand at 1434.539 kb on + strand at 1434.678 kb on - strand, within MPMX20_01368 at 1434.726 kb on - strand, within MPMX20_01368 at 1434.765 kb on - strand, within MPMX20_01368 at 1434.861 kb on + strand, within MPMX20_01368 at 1434.912 kb on + strand, within MPMX20_01368 at 1434.985 kb on - strand, within MPMX20_01368 at 1435.161 kb on + strand, within MPMX20_01368 at 1435.370 kb on - strand, within MPMX20_01368 at 1435.450 kb on - strand, within MPMX20_01368 at 1435.518 kb on + strand, within MPMX20_01368 at 1435.620 kb on - strand at 1435.620 kb on - strand at 1435.620 kb on - strand at 1435.627 kb on + strand at 1435.655 kb on - strand at 1435.655 kb on - strand at 1435.655 kb on - strand at 1435.747 kb on - strand at 1435.775 kb on + strand at 1435.851 kb on - strand at 1435.851 kb on - strand at 1435.977 kb on + strand at 1436.058 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.181 kb on + strand, within MPMX20_01369 at 1436.189 kb on - strand, within MPMX20_01369 at 1436.189 kb on - strand, within MPMX20_01369 at 1436.308 kb on - strand, within MPMX20_01369 at 1436.353 kb on + strand, within MPMX20_01369 at 1436.388 kb on + strand, within MPMX20_01369 at 1436.388 kb on + strand, within MPMX20_01369 at 1436.391 kb on - strand, within MPMX20_01369 at 1436.396 kb on - strand, within MPMX20_01369 at 1436.411 kb on - strand, within MPMX20_01369 at 1436.426 kb on - strand, within MPMX20_01369 at 1436.456 kb on - strand, within MPMX20_01369 at 1436.478 kb on + strand, within MPMX20_01369 at 1436.490 kb on - strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.504 kb on + strand, within MPMX20_01369 at 1436.512 kb on - strand, within MPMX20_01369 at 1436.512 kb on - strand, within MPMX20_01369 at 1436.545 kb on + strand, within MPMX20_01369 at 1436.610 kb on - strand, within MPMX20_01369 at 1436.658 kb on + strand, within MPMX20_01369 at 1436.666 kb on - strand, within MPMX20_01369 at 1436.680 kb on - strand, within MPMX20_01369
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,433,483 - MPMX20_01366 0.26 -3.0 1,433,483 - MPMX20_01366 0.26 -1.2 1,433,725 + MPMX20_01366 0.61 -2.0 1,433,725 + MPMX20_01366 0.61 -3.2 1,433,775 - MPMX20_01366 0.69 -1.1 1,433,797 - MPMX20_01366 0.72 -2.5 1,433,870 + MPMX20_01366 0.82 -1.6 1,433,878 - MPMX20_01366 0.83 -1.9 1,433,879 + MPMX20_01366 0.84 -2.5 1,433,880 + MPMX20_01366 0.84 -3.5 1,433,987 + +0.5 1,433,995 - +0.5 1,434,041 - MPMX20_01367 0.10 -1.6 1,434,108 + MPMX20_01367 0.26 -2.7 1,434,197 - MPMX20_01367 0.47 -2.0 1,434,204 + MPMX20_01367 0.48 -2.4 1,434,209 + MPMX20_01367 0.50 -2.1 1,434,209 + MPMX20_01367 0.50 -2.8 1,434,209 + MPMX20_01367 0.50 -2.4 1,434,209 + MPMX20_01367 0.50 -2.5 1,434,209 + MPMX20_01367 0.50 -1.8 1,434,217 - MPMX20_01367 0.52 -2.6 1,434,217 - MPMX20_01367 0.52 -3.7 1,434,217 - MPMX20_01367 0.52 -0.5 1,434,217 - MPMX20_01367 0.52 -2.0 1,434,217 - MPMX20_01367 0.52 -3.6 1,434,250 + MPMX20_01367 0.59 -3.8 1,434,265 + MPMX20_01367 0.63 -3.3 1,434,265 + MPMX20_01367 0.63 -2.3 1,434,287 + MPMX20_01367 0.68 -4.0 1,434,370 - MPMX20_01367 0.87 -1.6 1,434,490 - -0.4 1,434,490 - -1.8 1,434,539 + -2.4 1,434,678 - MPMX20_01368 0.17 -5.1 1,434,726 - MPMX20_01368 0.21 -3.0 1,434,765 - MPMX20_01368 0.24 -1.9 1,434,861 + MPMX20_01368 0.32 -4.0 1,434,912 + MPMX20_01368 0.36 -2.8 1,434,985 - MPMX20_01368 0.41 -1.4 1,435,161 + MPMX20_01368 0.55 -3.2 1,435,370 - MPMX20_01368 0.71 -2.3 1,435,450 - MPMX20_01368 0.77 -1.6 1,435,518 + MPMX20_01368 0.83 -1.5 1,435,620 - -1.5 1,435,620 - -2.3 1,435,620 - -2.6 1,435,627 + -1.5 1,435,655 - -3.4 1,435,655 - -0.8 1,435,655 - -0.9 1,435,747 - -1.5 1,435,775 + +0.1 1,435,851 - +0.3 1,435,851 - +0.1 1,435,977 + -2.6 1,436,058 + MPMX20_01369 0.14 -1.2 1,436,181 + MPMX20_01369 0.24 -2.0 1,436,181 + MPMX20_01369 0.24 -2.6 1,436,181 + MPMX20_01369 0.24 -2.9 1,436,189 - MPMX20_01369 0.24 -3.3 1,436,189 - MPMX20_01369 0.24 -2.1 1,436,308 - MPMX20_01369 0.34 -2.7 1,436,353 + MPMX20_01369 0.37 -1.9 1,436,388 + MPMX20_01369 0.40 -2.5 1,436,388 + MPMX20_01369 0.40 -3.0 1,436,391 - MPMX20_01369 0.40 -2.5 1,436,396 - MPMX20_01369 0.40 -2.0 1,436,411 - MPMX20_01369 0.42 -0.3 1,436,426 - MPMX20_01369 0.43 -2.7 1,436,456 - MPMX20_01369 0.45 -3.5 1,436,478 + MPMX20_01369 0.47 -1.6 1,436,490 - MPMX20_01369 0.48 -1.7 1,436,504 + MPMX20_01369 0.49 -3.6 1,436,504 + MPMX20_01369 0.49 -4.6 1,436,504 + MPMX20_01369 0.49 -2.4 1,436,504 + MPMX20_01369 0.49 -1.9 1,436,504 + MPMX20_01369 0.49 -1.6 1,436,512 - MPMX20_01369 0.49 -1.9 1,436,512 - MPMX20_01369 0.49 -0.8 1,436,545 + MPMX20_01369 0.52 -2.7 1,436,610 - MPMX20_01369 0.57 -1.5 1,436,658 + MPMX20_01369 0.61 -1.3 1,436,666 - MPMX20_01369 0.61 -1.0 1,436,680 - MPMX20_01369 0.62 -1.9
Or see this region's nucleotide sequence