Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01366

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01362 and MPMX20_01363 are separated by 14 nucleotidesMPMX20_01363 and MPMX20_01364 overlap by 1 nucleotidesMPMX20_01364 and MPMX20_01365 are separated by 148 nucleotidesMPMX20_01365 and MPMX20_01366 overlap by 4 nucleotidesMPMX20_01366 and MPMX20_01367 are separated by 3 nucleotidesMPMX20_01367 and MPMX20_01368 are separated by 28 nucleotides MPMX20_01362: MPMX20_01362 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 1,431,193 to 1,432,332 _01362 MPMX20_01363: MPMX20_01363 - Cytochrome bd-I ubiquinol oxidase subunit X, at 1,432,347 to 1,432,460 _01363 MPMX20_01364: MPMX20_01364 - hypothetical protein, at 1,432,460 to 1,432,750 _01364 MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303 _01365 MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992 _01366 MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424 _01367 MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742 _01368 Position (kb) 1433 1434Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1432.324 kb on - strandat 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.407 kb on + strand, within MPMX20_01363at 1432.407 kb on + strand, within MPMX20_01363at 1432.415 kb on - strand, within MPMX20_01363at 1432.415 kb on - strand, within MPMX20_01363at 1432.424 kb on + strand, within MPMX20_01363at 1432.432 kb on + strand, within MPMX20_01363at 1432.432 kb on - strand, within MPMX20_01363at 1432.433 kb on + strand, within MPMX20_01363at 1432.433 kb on + strand, within MPMX20_01363at 1432.441 kb on - strand, within MPMX20_01363at 1432.441 kb on - strand, within MPMX20_01363at 1432.503 kb on + strand, within MPMX20_01364at 1432.544 kb on + strand, within MPMX20_01364at 1432.562 kb on - strand, within MPMX20_01364at 1432.600 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.658 kb on - strand, within MPMX20_01364at 1432.725 kb on - strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.781 kb on + strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.866 kb on - strandat 1432.911 kb on - strandat 1432.944 kb on - strand, within MPMX20_01365at 1432.944 kb on - strand, within MPMX20_01365at 1433.008 kb on + strand, within MPMX20_01365at 1433.045 kb on + strand, within MPMX20_01365at 1433.053 kb on - strand, within MPMX20_01365at 1433.064 kb on + strand, within MPMX20_01365at 1433.161 kb on + strand, within MPMX20_01365at 1433.213 kb on - strand, within MPMX20_01365at 1433.236 kb on + strand, within MPMX20_01365at 1433.244 kb on - strand, within MPMX20_01365at 1433.244 kb on - strand, within MPMX20_01365at 1433.297 kb on + strandat 1433.483 kb on - strand, within MPMX20_01366at 1433.483 kb on - strand, within MPMX20_01366at 1433.725 kb on + strand, within MPMX20_01366at 1433.725 kb on + strand, within MPMX20_01366at 1433.775 kb on - strand, within MPMX20_01366at 1433.797 kb on - strand, within MPMX20_01366at 1433.870 kb on + strand, within MPMX20_01366at 1433.878 kb on - strand, within MPMX20_01366at 1433.879 kb on + strand, within MPMX20_01366at 1433.880 kb on + strand, within MPMX20_01366at 1433.987 kb on + strandat 1433.995 kb on - strandat 1434.041 kb on - strand, within MPMX20_01367at 1434.108 kb on + strand, within MPMX20_01367at 1434.197 kb on - strand, within MPMX20_01367at 1434.204 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.209 kb on + strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.217 kb on - strand, within MPMX20_01367at 1434.250 kb on + strand, within MPMX20_01367at 1434.265 kb on + strand, within MPMX20_01367at 1434.265 kb on + strand, within MPMX20_01367at 1434.287 kb on + strand, within MPMX20_01367at 1434.370 kb on - strand, within MPMX20_01367at 1434.490 kb on - strandat 1434.490 kb on - strandat 1434.539 kb on + strandat 1434.678 kb on - strand, within MPMX20_01368at 1434.726 kb on - strand, within MPMX20_01368at 1434.765 kb on - strand, within MPMX20_01368at 1434.861 kb on + strand, within MPMX20_01368at 1434.912 kb on + strand, within MPMX20_01368at 1434.985 kb on - strand, within MPMX20_01368

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,432,324 - -1.7
1,432,377 + MPMX20_01363 0.26 -0.2
1,432,377 + MPMX20_01363 0.26 +0.8
1,432,377 + MPMX20_01363 0.26 -0.2
1,432,377 + MPMX20_01363 0.26 -2.6
1,432,377 + MPMX20_01363 0.26 -3.1
1,432,377 + MPMX20_01363 0.26 +0.3
1,432,377 + MPMX20_01363 0.26 -0.5
1,432,377 + MPMX20_01363 0.26 -0.4
1,432,385 - MPMX20_01363 0.33 +0.8
1,432,385 - MPMX20_01363 0.33 -0.5
1,432,385 - MPMX20_01363 0.33 -0.2
1,432,385 - MPMX20_01363 0.33 +0.3
1,432,385 - MPMX20_01363 0.33 +0.8
1,432,407 + MPMX20_01363 0.53 -0.1
1,432,407 + MPMX20_01363 0.53 -0.7
1,432,415 - MPMX20_01363 0.60 -1.3
1,432,415 - MPMX20_01363 0.60 -0.5
1,432,424 + MPMX20_01363 0.68 -1.7
1,432,432 + MPMX20_01363 0.75 -1.1
1,432,432 - MPMX20_01363 0.75 -1.4
1,432,433 + MPMX20_01363 0.75 -0.1
1,432,433 + MPMX20_01363 0.75 +1.0
1,432,441 - MPMX20_01363 0.82 -1.6
1,432,441 - MPMX20_01363 0.82 +0.2
1,432,503 + MPMX20_01364 0.15 -0.0
1,432,544 + MPMX20_01364 0.29 +0.1
1,432,562 - MPMX20_01364 0.35 +0.2
1,432,600 - MPMX20_01364 0.48 -0.3
1,432,645 - MPMX20_01364 0.64 -0.4
1,432,645 - MPMX20_01364 0.64 +0.8
1,432,645 - MPMX20_01364 0.64 -0.4
1,432,658 - MPMX20_01364 0.68 -0.4
1,432,725 - -0.7
1,432,776 + +0.5
1,432,776 + +0.8
1,432,776 + +0.1
1,432,776 + -0.3
1,432,776 + -0.3
1,432,776 + +1.0
1,432,776 + +0.3
1,432,776 + -0.6
1,432,776 + +0.4
1,432,776 + +0.1
1,432,776 + +0.0
1,432,776 + +0.1
1,432,776 + -0.2
1,432,776 + +0.3
1,432,776 + -0.0
1,432,776 + -0.2
1,432,776 + +2.0
1,432,776 + -1.0
1,432,781 + -0.1
1,432,784 - +1.6
1,432,784 - +1.0
1,432,784 - -0.3
1,432,784 - +0.3
1,432,784 - +0.2
1,432,784 - +0.6
1,432,784 - +0.1
1,432,784 - +0.2
1,432,784 - -0.1
1,432,784 - -0.1
1,432,784 - -1.1
1,432,784 - +0.7
1,432,784 - +0.6
1,432,784 - +0.4
1,432,784 - -0.2
1,432,784 - -0.3
1,432,784 - +0.6
1,432,784 - +0.7
1,432,784 - -0.3
1,432,866 - -1.2
1,432,911 - -1.5
1,432,944 - MPMX20_01365 0.11 -1.5
1,432,944 - MPMX20_01365 0.11 -2.4
1,433,008 + MPMX20_01365 0.27 +0.7
1,433,045 + MPMX20_01365 0.36 +0.4
1,433,053 - MPMX20_01365 0.38 -0.9
1,433,064 + MPMX20_01365 0.41 -0.4
1,433,161 + MPMX20_01365 0.65 +1.1
1,433,213 - MPMX20_01365 0.78 -0.2
1,433,236 + MPMX20_01365 0.83 +1.0
1,433,244 - MPMX20_01365 0.85 -0.7
1,433,244 - MPMX20_01365 0.85 -0.7
1,433,297 + -0.0
1,433,483 - MPMX20_01366 0.26 -3.0
1,433,483 - MPMX20_01366 0.26 -1.2
1,433,725 + MPMX20_01366 0.61 -2.0
1,433,725 + MPMX20_01366 0.61 -3.2
1,433,775 - MPMX20_01366 0.69 -1.1
1,433,797 - MPMX20_01366 0.72 -2.5
1,433,870 + MPMX20_01366 0.82 -1.6
1,433,878 - MPMX20_01366 0.83 -1.9
1,433,879 + MPMX20_01366 0.84 -2.5
1,433,880 + MPMX20_01366 0.84 -3.5
1,433,987 + +0.5
1,433,995 - +0.5
1,434,041 - MPMX20_01367 0.10 -1.6
1,434,108 + MPMX20_01367 0.26 -2.7
1,434,197 - MPMX20_01367 0.47 -2.0
1,434,204 + MPMX20_01367 0.48 -2.4
1,434,209 + MPMX20_01367 0.50 -2.1
1,434,209 + MPMX20_01367 0.50 -2.8
1,434,209 + MPMX20_01367 0.50 -2.4
1,434,209 + MPMX20_01367 0.50 -2.5
1,434,209 + MPMX20_01367 0.50 -1.8
1,434,217 - MPMX20_01367 0.52 -2.6
1,434,217 - MPMX20_01367 0.52 -3.7
1,434,217 - MPMX20_01367 0.52 -0.5
1,434,217 - MPMX20_01367 0.52 -2.0
1,434,217 - MPMX20_01367 0.52 -3.6
1,434,250 + MPMX20_01367 0.59 -3.8
1,434,265 + MPMX20_01367 0.63 -3.3
1,434,265 + MPMX20_01367 0.63 -2.3
1,434,287 + MPMX20_01367 0.68 -4.0
1,434,370 - MPMX20_01367 0.87 -1.6
1,434,490 - -0.4
1,434,490 - -1.8
1,434,539 + -2.4
1,434,678 - MPMX20_01368 0.17 -5.1
1,434,726 - MPMX20_01368 0.21 -3.0
1,434,765 - MPMX20_01368 0.24 -1.9
1,434,861 + MPMX20_01368 0.32 -4.0
1,434,912 + MPMX20_01368 0.36 -2.8
1,434,985 - MPMX20_01368 0.41 -1.4

Or see this region's nucleotide sequence