Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01362 and MPMX20_01363 are separated by 14 nucleotides MPMX20_01363 and MPMX20_01364 overlap by 1 nucleotides MPMX20_01364 and MPMX20_01365 are separated by 148 nucleotides MPMX20_01365 and MPMX20_01366 overlap by 4 nucleotides MPMX20_01366 and MPMX20_01367 are separated by 3 nucleotides MPMX20_01367 and MPMX20_01368 are separated by 28 nucleotides
MPMX20_01362: MPMX20_01362 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 1,431,193 to 1,432,332
_01362
MPMX20_01363: MPMX20_01363 - Cytochrome bd-I ubiquinol oxidase subunit X, at 1,432,347 to 1,432,460
_01363
MPMX20_01364: MPMX20_01364 - hypothetical protein, at 1,432,460 to 1,432,750
_01364
MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303
_01365
MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992
_01366
MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424
_01367
MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742
_01368
Position (kb)
1433
1434 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1432.324 kb on - strand at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.424 kb on + strand, within MPMX20_01363 at 1432.432 kb on + strand, within MPMX20_01363 at 1432.432 kb on - strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.503 kb on + strand, within MPMX20_01364 at 1432.544 kb on + strand, within MPMX20_01364 at 1432.562 kb on - strand, within MPMX20_01364 at 1432.600 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.658 kb on - strand, within MPMX20_01364 at 1432.725 kb on - strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.781 kb on + strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.866 kb on - strand at 1432.911 kb on - strand at 1432.944 kb on - strand, within MPMX20_01365 at 1432.944 kb on - strand, within MPMX20_01365 at 1433.008 kb on + strand, within MPMX20_01365 at 1433.045 kb on + strand, within MPMX20_01365 at 1433.053 kb on - strand, within MPMX20_01365 at 1433.064 kb on + strand, within MPMX20_01365 at 1433.161 kb on + strand, within MPMX20_01365 at 1433.213 kb on - strand, within MPMX20_01365 at 1433.236 kb on + strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.297 kb on + strand at 1433.483 kb on - strand, within MPMX20_01366 at 1433.483 kb on - strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.775 kb on - strand, within MPMX20_01366 at 1433.797 kb on - strand, within MPMX20_01366 at 1433.870 kb on + strand, within MPMX20_01366 at 1433.878 kb on - strand, within MPMX20_01366 at 1433.879 kb on + strand, within MPMX20_01366 at 1433.880 kb on + strand, within MPMX20_01366 at 1433.987 kb on + strand at 1433.995 kb on - strand at 1434.041 kb on - strand, within MPMX20_01367 at 1434.108 kb on + strand, within MPMX20_01367 at 1434.197 kb on - strand, within MPMX20_01367 at 1434.204 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.250 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.287 kb on + strand, within MPMX20_01367 at 1434.370 kb on - strand, within MPMX20_01367 at 1434.490 kb on - strand at 1434.490 kb on - strand at 1434.539 kb on + strand at 1434.678 kb on - strand, within MPMX20_01368 at 1434.726 kb on - strand, within MPMX20_01368 at 1434.765 kb on - strand, within MPMX20_01368 at 1434.861 kb on + strand, within MPMX20_01368 at 1434.912 kb on + strand, within MPMX20_01368 at 1434.985 kb on - strand, within MPMX20_01368
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,432,324 - -1.7 1,432,377 + MPMX20_01363 0.26 -0.2 1,432,377 + MPMX20_01363 0.26 +0.8 1,432,377 + MPMX20_01363 0.26 -0.2 1,432,377 + MPMX20_01363 0.26 -2.6 1,432,377 + MPMX20_01363 0.26 -3.1 1,432,377 + MPMX20_01363 0.26 +0.3 1,432,377 + MPMX20_01363 0.26 -0.5 1,432,377 + MPMX20_01363 0.26 -0.4 1,432,385 - MPMX20_01363 0.33 +0.8 1,432,385 - MPMX20_01363 0.33 -0.5 1,432,385 - MPMX20_01363 0.33 -0.2 1,432,385 - MPMX20_01363 0.33 +0.3 1,432,385 - MPMX20_01363 0.33 +0.8 1,432,407 + MPMX20_01363 0.53 -0.1 1,432,407 + MPMX20_01363 0.53 -0.7 1,432,415 - MPMX20_01363 0.60 -1.3 1,432,415 - MPMX20_01363 0.60 -0.5 1,432,424 + MPMX20_01363 0.68 -1.7 1,432,432 + MPMX20_01363 0.75 -1.1 1,432,432 - MPMX20_01363 0.75 -1.4 1,432,433 + MPMX20_01363 0.75 -0.1 1,432,433 + MPMX20_01363 0.75 +1.0 1,432,441 - MPMX20_01363 0.82 -1.6 1,432,441 - MPMX20_01363 0.82 +0.2 1,432,503 + MPMX20_01364 0.15 -0.0 1,432,544 + MPMX20_01364 0.29 +0.1 1,432,562 - MPMX20_01364 0.35 +0.2 1,432,600 - MPMX20_01364 0.48 -0.3 1,432,645 - MPMX20_01364 0.64 -0.4 1,432,645 - MPMX20_01364 0.64 +0.8 1,432,645 - MPMX20_01364 0.64 -0.4 1,432,658 - MPMX20_01364 0.68 -0.4 1,432,725 - -0.7 1,432,776 + +0.5 1,432,776 + +0.8 1,432,776 + +0.1 1,432,776 + -0.3 1,432,776 + -0.3 1,432,776 + +1.0 1,432,776 + +0.3 1,432,776 + -0.6 1,432,776 + +0.4 1,432,776 + +0.1 1,432,776 + +0.0 1,432,776 + +0.1 1,432,776 + -0.2 1,432,776 + +0.3 1,432,776 + -0.0 1,432,776 + -0.2 1,432,776 + +2.0 1,432,776 + -1.0 1,432,781 + -0.1 1,432,784 - +1.6 1,432,784 - +1.0 1,432,784 - -0.3 1,432,784 - +0.3 1,432,784 - +0.2 1,432,784 - +0.6 1,432,784 - +0.1 1,432,784 - +0.2 1,432,784 - -0.1 1,432,784 - -0.1 1,432,784 - -1.1 1,432,784 - +0.7 1,432,784 - +0.6 1,432,784 - +0.4 1,432,784 - -0.2 1,432,784 - -0.3 1,432,784 - +0.6 1,432,784 - +0.7 1,432,784 - -0.3 1,432,866 - -1.2 1,432,911 - -1.5 1,432,944 - MPMX20_01365 0.11 -1.5 1,432,944 - MPMX20_01365 0.11 -2.4 1,433,008 + MPMX20_01365 0.27 +0.7 1,433,045 + MPMX20_01365 0.36 +0.4 1,433,053 - MPMX20_01365 0.38 -0.9 1,433,064 + MPMX20_01365 0.41 -0.4 1,433,161 + MPMX20_01365 0.65 +1.1 1,433,213 - MPMX20_01365 0.78 -0.2 1,433,236 + MPMX20_01365 0.83 +1.0 1,433,244 - MPMX20_01365 0.85 -0.7 1,433,244 - MPMX20_01365 0.85 -0.7 1,433,297 + -0.0 1,433,483 - MPMX20_01366 0.26 -3.0 1,433,483 - MPMX20_01366 0.26 -1.2 1,433,725 + MPMX20_01366 0.61 -2.0 1,433,725 + MPMX20_01366 0.61 -3.2 1,433,775 - MPMX20_01366 0.69 -1.1 1,433,797 - MPMX20_01366 0.72 -2.5 1,433,870 + MPMX20_01366 0.82 -1.6 1,433,878 - MPMX20_01366 0.83 -1.9 1,433,879 + MPMX20_01366 0.84 -2.5 1,433,880 + MPMX20_01366 0.84 -3.5 1,433,987 + +0.5 1,433,995 - +0.5 1,434,041 - MPMX20_01367 0.10 -1.6 1,434,108 + MPMX20_01367 0.26 -2.7 1,434,197 - MPMX20_01367 0.47 -2.0 1,434,204 + MPMX20_01367 0.48 -2.4 1,434,209 + MPMX20_01367 0.50 -2.1 1,434,209 + MPMX20_01367 0.50 -2.8 1,434,209 + MPMX20_01367 0.50 -2.4 1,434,209 + MPMX20_01367 0.50 -2.5 1,434,209 + MPMX20_01367 0.50 -1.8 1,434,217 - MPMX20_01367 0.52 -2.6 1,434,217 - MPMX20_01367 0.52 -3.7 1,434,217 - MPMX20_01367 0.52 -0.5 1,434,217 - MPMX20_01367 0.52 -2.0 1,434,217 - MPMX20_01367 0.52 -3.6 1,434,250 + MPMX20_01367 0.59 -3.8 1,434,265 + MPMX20_01367 0.63 -3.3 1,434,265 + MPMX20_01367 0.63 -2.3 1,434,287 + MPMX20_01367 0.68 -4.0 1,434,370 - MPMX20_01367 0.87 -1.6 1,434,490 - -0.4 1,434,490 - -1.8 1,434,539 + -2.4 1,434,678 - MPMX20_01368 0.17 -5.1 1,434,726 - MPMX20_01368 0.21 -3.0 1,434,765 - MPMX20_01368 0.24 -1.9 1,434,861 + MPMX20_01368 0.32 -4.0 1,434,912 + MPMX20_01368 0.36 -2.8 1,434,985 - MPMX20_01368 0.41 -1.4
Or see this region's nucleotide sequence