Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01361 and MPMX20_01362 are separated by 15 nucleotides MPMX20_01362 and MPMX20_01363 are separated by 14 nucleotides MPMX20_01363 and MPMX20_01364 overlap by 1 nucleotides MPMX20_01364 and MPMX20_01365 are separated by 148 nucleotides MPMX20_01365 and MPMX20_01366 overlap by 4 nucleotides
MPMX20_01361: MPMX20_01361 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 1,429,609 to 1,431,177
_01361
MPMX20_01362: MPMX20_01362 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 1,431,193 to 1,432,332
_01362
MPMX20_01363: MPMX20_01363 - Cytochrome bd-I ubiquinol oxidase subunit X, at 1,432,347 to 1,432,460
_01363
MPMX20_01364: MPMX20_01364 - hypothetical protein, at 1,432,460 to 1,432,750
_01364
MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303
_01365
MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992
_01366
Position (kb)
1431
1432
1433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1430.276 kb on + strand, within MPMX20_01361 at 1430.411 kb on + strand, within MPMX20_01361 at 1430.411 kb on + strand, within MPMX20_01361 at 1430.419 kb on - strand, within MPMX20_01361 at 1430.517 kb on + strand, within MPMX20_01361 at 1430.525 kb on - strand, within MPMX20_01361 at 1430.616 kb on - strand, within MPMX20_01361 at 1430.637 kb on + strand, within MPMX20_01361 at 1430.664 kb on - strand, within MPMX20_01361 at 1430.669 kb on - strand, within MPMX20_01361 at 1430.684 kb on + strand, within MPMX20_01361 at 1430.707 kb on - strand, within MPMX20_01361 at 1430.707 kb on - strand, within MPMX20_01361 at 1430.766 kb on - strand, within MPMX20_01361 at 1430.894 kb on + strand, within MPMX20_01361 at 1430.912 kb on - strand, within MPMX20_01361 at 1430.941 kb on + strand, within MPMX20_01361 at 1430.992 kb on - strand, within MPMX20_01361 at 1431.034 kb on - strand at 1431.054 kb on - strand at 1431.068 kb on - strand at 1431.106 kb on + strand at 1431.106 kb on + strand at 1431.110 kb on - strand at 1431.134 kb on + strand at 1431.239 kb on + strand at 1431.280 kb on - strand at 1431.352 kb on + strand, within MPMX20_01362 at 1431.389 kb on - strand, within MPMX20_01362 at 1431.431 kb on - strand, within MPMX20_01362 at 1431.710 kb on - strand, within MPMX20_01362 at 1431.823 kb on + strand, within MPMX20_01362 at 1431.848 kb on + strand, within MPMX20_01362 at 1431.856 kb on - strand, within MPMX20_01362 at 1431.910 kb on + strand, within MPMX20_01362 at 1431.910 kb on - strand, within MPMX20_01362 at 1431.910 kb on - strand, within MPMX20_01362 at 1431.911 kb on + strand, within MPMX20_01362 at 1431.912 kb on + strand, within MPMX20_01362 at 1432.009 kb on + strand, within MPMX20_01362 at 1432.122 kb on - strand, within MPMX20_01362 at 1432.130 kb on - strand, within MPMX20_01362 at 1432.157 kb on + strand, within MPMX20_01362 at 1432.157 kb on + strand, within MPMX20_01362 at 1432.199 kb on + strand, within MPMX20_01362 at 1432.248 kb on + strand at 1432.248 kb on + strand at 1432.248 kb on + strand at 1432.248 kb on + strand at 1432.256 kb on - strand at 1432.265 kb on - strand at 1432.324 kb on - strand at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.377 kb on + strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.385 kb on - strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.407 kb on + strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.415 kb on - strand, within MPMX20_01363 at 1432.424 kb on + strand, within MPMX20_01363 at 1432.432 kb on + strand, within MPMX20_01363 at 1432.432 kb on - strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.433 kb on + strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.441 kb on - strand, within MPMX20_01363 at 1432.503 kb on + strand, within MPMX20_01364 at 1432.544 kb on + strand, within MPMX20_01364 at 1432.562 kb on - strand, within MPMX20_01364 at 1432.600 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.645 kb on - strand, within MPMX20_01364 at 1432.658 kb on - strand, within MPMX20_01364 at 1432.725 kb on - strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.776 kb on + strand at 1432.781 kb on + strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1432.866 kb on - strand at 1432.911 kb on - strand at 1432.944 kb on - strand, within MPMX20_01365 at 1432.944 kb on - strand, within MPMX20_01365 at 1433.008 kb on + strand, within MPMX20_01365 at 1433.045 kb on + strand, within MPMX20_01365 at 1433.053 kb on - strand, within MPMX20_01365 at 1433.064 kb on + strand, within MPMX20_01365 at 1433.161 kb on + strand, within MPMX20_01365 at 1433.213 kb on - strand, within MPMX20_01365 at 1433.236 kb on + strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,430,276 + MPMX20_01361 0.43 -1.3 1,430,411 + MPMX20_01361 0.51 -0.2 1,430,411 + MPMX20_01361 0.51 -1.2 1,430,419 - MPMX20_01361 0.52 -2.5 1,430,517 + MPMX20_01361 0.58 -0.7 1,430,525 - MPMX20_01361 0.58 -1.2 1,430,616 - MPMX20_01361 0.64 +0.8 1,430,637 + MPMX20_01361 0.66 -2.3 1,430,664 - MPMX20_01361 0.67 +0.8 1,430,669 - MPMX20_01361 0.68 -0.7 1,430,684 + MPMX20_01361 0.69 -0.2 1,430,707 - MPMX20_01361 0.70 -2.2 1,430,707 - MPMX20_01361 0.70 -0.7 1,430,766 - MPMX20_01361 0.74 -2.2 1,430,894 + MPMX20_01361 0.82 -1.7 1,430,912 - MPMX20_01361 0.83 -2.5 1,430,941 + MPMX20_01361 0.85 -1.5 1,430,992 - MPMX20_01361 0.88 +1.6 1,431,034 - +0.8 1,431,054 - -0.2 1,431,068 - -0.2 1,431,106 + +0.6 1,431,106 + -1.6 1,431,110 - -0.7 1,431,134 + +0.0 1,431,239 + -1.1 1,431,280 - -0.7 1,431,352 + MPMX20_01362 0.14 -1.1 1,431,389 - MPMX20_01362 0.17 -0.1 1,431,431 - MPMX20_01362 0.21 -0.7 1,431,710 - MPMX20_01362 0.45 +0.1 1,431,823 + MPMX20_01362 0.55 -0.4 1,431,848 + MPMX20_01362 0.57 -0.7 1,431,856 - MPMX20_01362 0.58 -0.7 1,431,910 + MPMX20_01362 0.63 -0.4 1,431,910 - MPMX20_01362 0.63 +0.9 1,431,910 - MPMX20_01362 0.63 -0.7 1,431,911 + MPMX20_01362 0.63 -0.1 1,431,912 + MPMX20_01362 0.63 -1.1 1,432,009 + MPMX20_01362 0.72 -1.1 1,432,122 - MPMX20_01362 0.81 -1.2 1,432,130 - MPMX20_01362 0.82 -0.9 1,432,157 + MPMX20_01362 0.85 -0.6 1,432,157 + MPMX20_01362 0.85 -1.2 1,432,199 + MPMX20_01362 0.88 -1.2 1,432,248 + -1.2 1,432,248 + -0.7 1,432,248 + -2.0 1,432,248 + -0.7 1,432,256 - +0.8 1,432,265 - -1.7 1,432,324 - -1.7 1,432,377 + MPMX20_01363 0.26 -0.2 1,432,377 + MPMX20_01363 0.26 +0.8 1,432,377 + MPMX20_01363 0.26 -0.2 1,432,377 + MPMX20_01363 0.26 -2.6 1,432,377 + MPMX20_01363 0.26 -3.1 1,432,377 + MPMX20_01363 0.26 +0.3 1,432,377 + MPMX20_01363 0.26 -0.5 1,432,377 + MPMX20_01363 0.26 -0.4 1,432,385 - MPMX20_01363 0.33 +0.8 1,432,385 - MPMX20_01363 0.33 -0.5 1,432,385 - MPMX20_01363 0.33 -0.2 1,432,385 - MPMX20_01363 0.33 +0.3 1,432,385 - MPMX20_01363 0.33 +0.8 1,432,407 + MPMX20_01363 0.53 -0.1 1,432,407 + MPMX20_01363 0.53 -0.7 1,432,415 - MPMX20_01363 0.60 -1.3 1,432,415 - MPMX20_01363 0.60 -0.5 1,432,424 + MPMX20_01363 0.68 -1.7 1,432,432 + MPMX20_01363 0.75 -1.1 1,432,432 - MPMX20_01363 0.75 -1.4 1,432,433 + MPMX20_01363 0.75 -0.1 1,432,433 + MPMX20_01363 0.75 +1.0 1,432,441 - MPMX20_01363 0.82 -1.6 1,432,441 - MPMX20_01363 0.82 +0.2 1,432,503 + MPMX20_01364 0.15 -0.0 1,432,544 + MPMX20_01364 0.29 +0.1 1,432,562 - MPMX20_01364 0.35 +0.2 1,432,600 - MPMX20_01364 0.48 -0.3 1,432,645 - MPMX20_01364 0.64 -0.4 1,432,645 - MPMX20_01364 0.64 +0.8 1,432,645 - MPMX20_01364 0.64 -0.4 1,432,658 - MPMX20_01364 0.68 -0.4 1,432,725 - -0.7 1,432,776 + +0.5 1,432,776 + +0.8 1,432,776 + +0.1 1,432,776 + -0.3 1,432,776 + -0.3 1,432,776 + +1.0 1,432,776 + +0.3 1,432,776 + -0.6 1,432,776 + +0.4 1,432,776 + +0.1 1,432,776 + +0.0 1,432,776 + +0.1 1,432,776 + -0.2 1,432,776 + +0.3 1,432,776 + -0.0 1,432,776 + -0.2 1,432,776 + +2.0 1,432,776 + -1.0 1,432,781 + -0.1 1,432,784 - +1.6 1,432,784 - +1.0 1,432,784 - -0.3 1,432,784 - +0.3 1,432,784 - +0.2 1,432,784 - +0.6 1,432,784 - +0.1 1,432,784 - +0.2 1,432,784 - -0.1 1,432,784 - -0.1 1,432,784 - -1.1 1,432,784 - +0.7 1,432,784 - +0.6 1,432,784 - +0.4 1,432,784 - -0.2 1,432,784 - -0.3 1,432,784 - +0.6 1,432,784 - +0.7 1,432,784 - -0.3 1,432,866 - -1.2 1,432,911 - -1.5 1,432,944 - MPMX20_01365 0.11 -1.5 1,432,944 - MPMX20_01365 0.11 -2.4 1,433,008 + MPMX20_01365 0.27 +0.7 1,433,045 + MPMX20_01365 0.36 +0.4 1,433,053 - MPMX20_01365 0.38 -0.9 1,433,064 + MPMX20_01365 0.41 -0.4 1,433,161 + MPMX20_01365 0.65 +1.1 1,433,213 - MPMX20_01365 0.78 -0.2 1,433,236 + MPMX20_01365 0.83 +1.0 1,433,244 - MPMX20_01365 0.85 -0.7 1,433,244 - MPMX20_01365 0.85 -0.7 1,433,297 + -0.0
Or see this region's nucleotide sequence