Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01362

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01361 and MPMX20_01362 are separated by 15 nucleotidesMPMX20_01362 and MPMX20_01363 are separated by 14 nucleotidesMPMX20_01363 and MPMX20_01364 overlap by 1 nucleotidesMPMX20_01364 and MPMX20_01365 are separated by 148 nucleotidesMPMX20_01365 and MPMX20_01366 overlap by 4 nucleotides MPMX20_01361: MPMX20_01361 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 1,429,609 to 1,431,177 _01361 MPMX20_01362: MPMX20_01362 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 1,431,193 to 1,432,332 _01362 MPMX20_01363: MPMX20_01363 - Cytochrome bd-I ubiquinol oxidase subunit X, at 1,432,347 to 1,432,460 _01363 MPMX20_01364: MPMX20_01364 - hypothetical protein, at 1,432,460 to 1,432,750 _01364 MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303 _01365 MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992 _01366 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1430.276 kb on + strand, within MPMX20_01361at 1430.411 kb on + strand, within MPMX20_01361at 1430.411 kb on + strand, within MPMX20_01361at 1430.419 kb on - strand, within MPMX20_01361at 1430.517 kb on + strand, within MPMX20_01361at 1430.525 kb on - strand, within MPMX20_01361at 1430.616 kb on - strand, within MPMX20_01361at 1430.637 kb on + strand, within MPMX20_01361at 1430.664 kb on - strand, within MPMX20_01361at 1430.669 kb on - strand, within MPMX20_01361at 1430.684 kb on + strand, within MPMX20_01361at 1430.707 kb on - strand, within MPMX20_01361at 1430.707 kb on - strand, within MPMX20_01361at 1430.766 kb on - strand, within MPMX20_01361at 1430.894 kb on + strand, within MPMX20_01361at 1430.912 kb on - strand, within MPMX20_01361at 1430.941 kb on + strand, within MPMX20_01361at 1430.992 kb on - strand, within MPMX20_01361at 1431.034 kb on - strandat 1431.054 kb on - strandat 1431.068 kb on - strandat 1431.106 kb on + strandat 1431.106 kb on + strandat 1431.110 kb on - strandat 1431.134 kb on + strandat 1431.239 kb on + strandat 1431.280 kb on - strandat 1431.352 kb on + strand, within MPMX20_01362at 1431.389 kb on - strand, within MPMX20_01362at 1431.431 kb on - strand, within MPMX20_01362at 1431.710 kb on - strand, within MPMX20_01362at 1431.823 kb on + strand, within MPMX20_01362at 1431.848 kb on + strand, within MPMX20_01362at 1431.856 kb on - strand, within MPMX20_01362at 1431.910 kb on + strand, within MPMX20_01362at 1431.910 kb on - strand, within MPMX20_01362at 1431.910 kb on - strand, within MPMX20_01362at 1431.911 kb on + strand, within MPMX20_01362at 1431.912 kb on + strand, within MPMX20_01362at 1432.009 kb on + strand, within MPMX20_01362at 1432.122 kb on - strand, within MPMX20_01362at 1432.130 kb on - strand, within MPMX20_01362at 1432.157 kb on + strand, within MPMX20_01362at 1432.157 kb on + strand, within MPMX20_01362at 1432.199 kb on + strand, within MPMX20_01362at 1432.248 kb on + strandat 1432.248 kb on + strandat 1432.248 kb on + strandat 1432.248 kb on + strandat 1432.256 kb on - strandat 1432.265 kb on - strandat 1432.324 kb on - strandat 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.377 kb on + strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.385 kb on - strand, within MPMX20_01363at 1432.407 kb on + strand, within MPMX20_01363at 1432.407 kb on + strand, within MPMX20_01363at 1432.415 kb on - strand, within MPMX20_01363at 1432.415 kb on - strand, within MPMX20_01363at 1432.424 kb on + strand, within MPMX20_01363at 1432.432 kb on + strand, within MPMX20_01363at 1432.432 kb on - strand, within MPMX20_01363at 1432.433 kb on + strand, within MPMX20_01363at 1432.433 kb on + strand, within MPMX20_01363at 1432.441 kb on - strand, within MPMX20_01363at 1432.441 kb on - strand, within MPMX20_01363at 1432.503 kb on + strand, within MPMX20_01364at 1432.544 kb on + strand, within MPMX20_01364at 1432.562 kb on - strand, within MPMX20_01364at 1432.600 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.645 kb on - strand, within MPMX20_01364at 1432.658 kb on - strand, within MPMX20_01364at 1432.725 kb on - strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.776 kb on + strandat 1432.781 kb on + strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.784 kb on - strandat 1432.866 kb on - strandat 1432.911 kb on - strandat 1432.944 kb on - strand, within MPMX20_01365at 1432.944 kb on - strand, within MPMX20_01365at 1433.008 kb on + strand, within MPMX20_01365at 1433.045 kb on + strand, within MPMX20_01365at 1433.053 kb on - strand, within MPMX20_01365at 1433.064 kb on + strand, within MPMX20_01365at 1433.161 kb on + strand, within MPMX20_01365at 1433.213 kb on - strand, within MPMX20_01365at 1433.236 kb on + strand, within MPMX20_01365at 1433.244 kb on - strand, within MPMX20_01365at 1433.244 kb on - strand, within MPMX20_01365at 1433.297 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
1,430,276 + MPMX20_01361 0.43 -1.3
1,430,411 + MPMX20_01361 0.51 -0.2
1,430,411 + MPMX20_01361 0.51 -1.2
1,430,419 - MPMX20_01361 0.52 -2.5
1,430,517 + MPMX20_01361 0.58 -0.7
1,430,525 - MPMX20_01361 0.58 -1.2
1,430,616 - MPMX20_01361 0.64 +0.8
1,430,637 + MPMX20_01361 0.66 -2.3
1,430,664 - MPMX20_01361 0.67 +0.8
1,430,669 - MPMX20_01361 0.68 -0.7
1,430,684 + MPMX20_01361 0.69 -0.2
1,430,707 - MPMX20_01361 0.70 -2.2
1,430,707 - MPMX20_01361 0.70 -0.7
1,430,766 - MPMX20_01361 0.74 -2.2
1,430,894 + MPMX20_01361 0.82 -1.7
1,430,912 - MPMX20_01361 0.83 -2.5
1,430,941 + MPMX20_01361 0.85 -1.5
1,430,992 - MPMX20_01361 0.88 +1.6
1,431,034 - +0.8
1,431,054 - -0.2
1,431,068 - -0.2
1,431,106 + +0.6
1,431,106 + -1.6
1,431,110 - -0.7
1,431,134 + +0.0
1,431,239 + -1.1
1,431,280 - -0.7
1,431,352 + MPMX20_01362 0.14 -1.1
1,431,389 - MPMX20_01362 0.17 -0.1
1,431,431 - MPMX20_01362 0.21 -0.7
1,431,710 - MPMX20_01362 0.45 +0.1
1,431,823 + MPMX20_01362 0.55 -0.4
1,431,848 + MPMX20_01362 0.57 -0.7
1,431,856 - MPMX20_01362 0.58 -0.7
1,431,910 + MPMX20_01362 0.63 -0.4
1,431,910 - MPMX20_01362 0.63 +0.9
1,431,910 - MPMX20_01362 0.63 -0.7
1,431,911 + MPMX20_01362 0.63 -0.1
1,431,912 + MPMX20_01362 0.63 -1.1
1,432,009 + MPMX20_01362 0.72 -1.1
1,432,122 - MPMX20_01362 0.81 -1.2
1,432,130 - MPMX20_01362 0.82 -0.9
1,432,157 + MPMX20_01362 0.85 -0.6
1,432,157 + MPMX20_01362 0.85 -1.2
1,432,199 + MPMX20_01362 0.88 -1.2
1,432,248 + -1.2
1,432,248 + -0.7
1,432,248 + -2.0
1,432,248 + -0.7
1,432,256 - +0.8
1,432,265 - -1.7
1,432,324 - -1.7
1,432,377 + MPMX20_01363 0.26 -0.2
1,432,377 + MPMX20_01363 0.26 +0.8
1,432,377 + MPMX20_01363 0.26 -0.2
1,432,377 + MPMX20_01363 0.26 -2.6
1,432,377 + MPMX20_01363 0.26 -3.1
1,432,377 + MPMX20_01363 0.26 +0.3
1,432,377 + MPMX20_01363 0.26 -0.5
1,432,377 + MPMX20_01363 0.26 -0.4
1,432,385 - MPMX20_01363 0.33 +0.8
1,432,385 - MPMX20_01363 0.33 -0.5
1,432,385 - MPMX20_01363 0.33 -0.2
1,432,385 - MPMX20_01363 0.33 +0.3
1,432,385 - MPMX20_01363 0.33 +0.8
1,432,407 + MPMX20_01363 0.53 -0.1
1,432,407 + MPMX20_01363 0.53 -0.7
1,432,415 - MPMX20_01363 0.60 -1.3
1,432,415 - MPMX20_01363 0.60 -0.5
1,432,424 + MPMX20_01363 0.68 -1.7
1,432,432 + MPMX20_01363 0.75 -1.1
1,432,432 - MPMX20_01363 0.75 -1.4
1,432,433 + MPMX20_01363 0.75 -0.1
1,432,433 + MPMX20_01363 0.75 +1.0
1,432,441 - MPMX20_01363 0.82 -1.6
1,432,441 - MPMX20_01363 0.82 +0.2
1,432,503 + MPMX20_01364 0.15 -0.0
1,432,544 + MPMX20_01364 0.29 +0.1
1,432,562 - MPMX20_01364 0.35 +0.2
1,432,600 - MPMX20_01364 0.48 -0.3
1,432,645 - MPMX20_01364 0.64 -0.4
1,432,645 - MPMX20_01364 0.64 +0.8
1,432,645 - MPMX20_01364 0.64 -0.4
1,432,658 - MPMX20_01364 0.68 -0.4
1,432,725 - -0.7
1,432,776 + +0.5
1,432,776 + +0.8
1,432,776 + +0.1
1,432,776 + -0.3
1,432,776 + -0.3
1,432,776 + +1.0
1,432,776 + +0.3
1,432,776 + -0.6
1,432,776 + +0.4
1,432,776 + +0.1
1,432,776 + +0.0
1,432,776 + +0.1
1,432,776 + -0.2
1,432,776 + +0.3
1,432,776 + -0.0
1,432,776 + -0.2
1,432,776 + +2.0
1,432,776 + -1.0
1,432,781 + -0.1
1,432,784 - +1.6
1,432,784 - +1.0
1,432,784 - -0.3
1,432,784 - +0.3
1,432,784 - +0.2
1,432,784 - +0.6
1,432,784 - +0.1
1,432,784 - +0.2
1,432,784 - -0.1
1,432,784 - -0.1
1,432,784 - -1.1
1,432,784 - +0.7
1,432,784 - +0.6
1,432,784 - +0.4
1,432,784 - -0.2
1,432,784 - -0.3
1,432,784 - +0.6
1,432,784 - +0.7
1,432,784 - -0.3
1,432,866 - -1.2
1,432,911 - -1.5
1,432,944 - MPMX20_01365 0.11 -1.5
1,432,944 - MPMX20_01365 0.11 -2.4
1,433,008 + MPMX20_01365 0.27 +0.7
1,433,045 + MPMX20_01365 0.36 +0.4
1,433,053 - MPMX20_01365 0.38 -0.9
1,433,064 + MPMX20_01365 0.41 -0.4
1,433,161 + MPMX20_01365 0.65 +1.1
1,433,213 - MPMX20_01365 0.78 -0.2
1,433,236 + MPMX20_01365 0.83 +1.0
1,433,244 - MPMX20_01365 0.85 -0.7
1,433,244 - MPMX20_01365 0.85 -0.7
1,433,297 + -0.0

Or see this region's nucleotide sequence