Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01355

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01354 and MPMX20_01355 are separated by 14 nucleotidesMPMX20_01355 and MPMX20_01356 are separated by 85 nucleotides MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024 _01354 MPMX20_01355: MPMX20_01355 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 1,420,039 to 1,421,265 _01355 MPMX20_01356: MPMX20_01356 - Succinate--CoA ligase [ADP-forming] subunit beta, at 1,421,351 to 1,422,517 _01356 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -3 -2 -1 0 1at 1419.439 kb on + strand, within MPMX20_01354at 1419.439 kb on + strand, within MPMX20_01354at 1419.490 kb on + strand, within MPMX20_01354at 1419.581 kb on + strand, within MPMX20_01354at 1419.586 kb on + strand, within MPMX20_01354at 1419.586 kb on + strand, within MPMX20_01354at 1419.959 kb on + strandat 1419.992 kb on + strandat 1421.131 kb on + strand, within MPMX20_01355at 1421.163 kb on + strandat 1421.348 kb on - strandat 1421.348 kb on - strandat 1421.424 kb on + strandat 1421.429 kb on + strandat 1421.432 kb on - strandat 1421.432 kb on - strandat 1421.432 kb on - strandat 1421.437 kb on - strandat 1421.488 kb on + strand, within MPMX20_01356at 1421.526 kb on + strand, within MPMX20_01356at 1421.526 kb on + strand, within MPMX20_01356at 1421.534 kb on - strand, within MPMX20_01356at 1421.693 kb on - strand, within MPMX20_01356at 1421.769 kb on + strand, within MPMX20_01356at 1421.935 kb on + strand, within MPMX20_01356at 1421.961 kb on - strand, within MPMX20_01356at 1421.966 kb on - strand, within MPMX20_01356at 1422.009 kb on + strand, within MPMX20_01356at 1422.063 kb on - strand, within MPMX20_01356at 1422.094 kb on - strand, within MPMX20_01356at 1422.095 kb on + strand, within MPMX20_01356at 1422.100 kb on + strand, within MPMX20_01356at 1422.113 kb on - strand, within MPMX20_01356at 1422.149 kb on + strand, within MPMX20_01356at 1422.149 kb on + strand, within MPMX20_01356at 1422.174 kb on + strand, within MPMX20_01356at 1422.174 kb on + strand, within MPMX20_01356at 1422.184 kb on + strand, within MPMX20_01356at 1422.222 kb on - strand, within MPMX20_01356at 1422.230 kb on + strand, within MPMX20_01356at 1422.238 kb on - strand, within MPMX20_01356

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,419,439 + MPMX20_01354 0.79 -2.2
1,419,439 + MPMX20_01354 0.79 -2.1
1,419,490 + MPMX20_01354 0.81 -1.7
1,419,581 + MPMX20_01354 0.84 -1.1
1,419,586 + MPMX20_01354 0.84 -1.5
1,419,586 + MPMX20_01354 0.84 -1.2
1,419,959 + -1.0
1,419,992 + -0.4
1,421,131 + MPMX20_01355 0.89 -2.0
1,421,163 + -0.2
1,421,348 - -1.7
1,421,348 - -0.5
1,421,424 + -3.1
1,421,429 + -1.3
1,421,432 - +0.1
1,421,432 - -0.7
1,421,432 - -0.9
1,421,437 - -1.5
1,421,488 + MPMX20_01356 0.12 -0.4
1,421,526 + MPMX20_01356 0.15 -1.3
1,421,526 + MPMX20_01356 0.15 -0.5
1,421,534 - MPMX20_01356 0.16 -2.3
1,421,693 - MPMX20_01356 0.29 -0.9
1,421,769 + MPMX20_01356 0.36 +1.7
1,421,935 + MPMX20_01356 0.50 -0.9
1,421,961 - MPMX20_01356 0.52 +0.4
1,421,966 - MPMX20_01356 0.53 -0.8
1,422,009 + MPMX20_01356 0.56 +1.4
1,422,063 - MPMX20_01356 0.61 -0.6
1,422,094 - MPMX20_01356 0.64 -0.8
1,422,095 + MPMX20_01356 0.64 -1.2
1,422,100 + MPMX20_01356 0.64 -2.4
1,422,113 - MPMX20_01356 0.65 -0.5
1,422,149 + MPMX20_01356 0.68 -0.6
1,422,149 + MPMX20_01356 0.68 -0.4
1,422,174 + MPMX20_01356 0.71 -0.7
1,422,174 + MPMX20_01356 0.71 -0.3
1,422,184 + MPMX20_01356 0.71 +0.1
1,422,222 - MPMX20_01356 0.75 -0.5
1,422,230 + MPMX20_01356 0.75 -1.0
1,422,238 - MPMX20_01356 0.76 -1.3

Or see this region's nucleotide sequence