Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01353

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01352 and MPMX20_01353 are separated by 15 nucleotidesMPMX20_01353 and MPMX20_01354 are separated by 226 nucleotides MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258 _01352 MPMX20_01353: MPMX20_01353 - Succinate dehydrogenase iron-sulfur subunit, at 1,416,274 to 1,416,990 _01353 MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024 _01354 Position (kb) 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1at 1415.323 kb on - strand, within MPMX20_01352at 1415.353 kb on - strand, within MPMX20_01352at 1415.353 kb on - strand, within MPMX20_01352at 1415.490 kb on + strand, within MPMX20_01352at 1415.490 kb on + strand, within MPMX20_01352at 1415.613 kb on + strand, within MPMX20_01352at 1415.621 kb on - strand, within MPMX20_01352at 1415.621 kb on - strand, within MPMX20_01352at 1415.746 kb on - strand, within MPMX20_01352at 1415.786 kb on - strand, within MPMX20_01352at 1415.826 kb on - strand, within MPMX20_01352at 1415.826 kb on - strand, within MPMX20_01352at 1415.947 kb on - strand, within MPMX20_01352at 1415.957 kb on - strand, within MPMX20_01352at 1415.996 kb on + strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.037 kb on - strand, within MPMX20_01352at 1416.067 kb on + strand, within MPMX20_01352at 1416.091 kb on + strandat 1416.099 kb on - strandat 1416.386 kb on + strand, within MPMX20_01353at 1416.394 kb on - strand, within MPMX20_01353at 1416.446 kb on - strand, within MPMX20_01353at 1416.492 kb on + strand, within MPMX20_01353at 1416.514 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.707 kb on + strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.762 kb on - strand, within MPMX20_01353at 1416.836 kb on - strand, within MPMX20_01353at 1416.914 kb on + strand, within MPMX20_01353at 1416.919 kb on + strandat 1416.920 kb on + strandat 1416.970 kb on - strandat 1416.983 kb on + strandat 1416.990 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.022 kb on - strandat 1417.027 kb on - strandat 1417.028 kb on - strandat 1417.039 kb on + strandat 1417.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,415,323 - MPMX20_01352 0.47 -1.2
1,415,353 - MPMX20_01352 0.49 -2.0
1,415,353 - MPMX20_01352 0.49 -1.0
1,415,490 + MPMX20_01352 0.56 -2.5
1,415,490 + MPMX20_01352 0.56 -0.2
1,415,613 + MPMX20_01352 0.63 -1.8
1,415,621 - MPMX20_01352 0.64 -3.0
1,415,621 - MPMX20_01352 0.64 +0.0
1,415,746 - MPMX20_01352 0.71 -0.4
1,415,786 - MPMX20_01352 0.73 -2.0
1,415,826 - MPMX20_01352 0.75 -1.0
1,415,826 - MPMX20_01352 0.75 -1.7
1,415,947 - MPMX20_01352 0.82 -0.7
1,415,957 - MPMX20_01352 0.83 +0.6
1,415,996 + MPMX20_01352 0.85 -0.4
1,416,014 - MPMX20_01352 0.86 -0.7
1,416,014 - MPMX20_01352 0.86 -3.1
1,416,014 - MPMX20_01352 0.86 -0.2
1,416,037 - MPMX20_01352 0.87 -1.0
1,416,067 + MPMX20_01352 0.89 -3.2
1,416,091 + -1.0
1,416,099 - -2.5
1,416,386 + MPMX20_01353 0.16 -1.0
1,416,394 - MPMX20_01353 0.17 -2.1
1,416,446 - MPMX20_01353 0.24 +0.8
1,416,492 + MPMX20_01353 0.30 -1.7
1,416,514 + MPMX20_01353 0.33 -1.2
1,416,680 + MPMX20_01353 0.57 +0.3
1,416,680 + MPMX20_01353 0.57 -2.5
1,416,707 + MPMX20_01353 0.60 -1.4
1,416,724 - MPMX20_01353 0.63 -2.7
1,416,724 - MPMX20_01353 0.63 -0.5
1,416,762 - MPMX20_01353 0.68 -1.8
1,416,836 - MPMX20_01353 0.78 -1.9
1,416,914 + MPMX20_01353 0.89 -1.8
1,416,919 + -1.4
1,416,920 + -0.3
1,416,970 - -1.6
1,416,983 + +0.2
1,416,990 + -0.5
1,417,020 + -0.7
1,417,020 + -0.6
1,417,020 + +0.2
1,417,022 - -2.2
1,417,027 - -0.3
1,417,028 - -1.0
1,417,039 + -1.3
1,417,040 - -1.5

Or see this region's nucleotide sequence