Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01352 and MPMX20_01353 are separated by 15 nucleotides MPMX20_01353 and MPMX20_01354 are separated by 226 nucleotides
MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258
_01352
MPMX20_01353: MPMX20_01353 - Succinate dehydrogenase iron-sulfur subunit, at 1,416,274 to 1,416,990
_01353
MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024
_01354
Position (kb)
1416
1417 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1415.323 kb on - strand, within MPMX20_01352 at 1415.353 kb on - strand, within MPMX20_01352 at 1415.353 kb on - strand, within MPMX20_01352 at 1415.490 kb on + strand, within MPMX20_01352 at 1415.490 kb on + strand, within MPMX20_01352 at 1415.613 kb on + strand, within MPMX20_01352 at 1415.621 kb on - strand, within MPMX20_01352 at 1415.621 kb on - strand, within MPMX20_01352 at 1415.746 kb on - strand, within MPMX20_01352 at 1415.786 kb on - strand, within MPMX20_01352 at 1415.826 kb on - strand, within MPMX20_01352 at 1415.826 kb on - strand, within MPMX20_01352 at 1415.947 kb on - strand, within MPMX20_01352 at 1415.957 kb on - strand, within MPMX20_01352 at 1415.996 kb on + strand, within MPMX20_01352 at 1416.014 kb on - strand, within MPMX20_01352 at 1416.014 kb on - strand, within MPMX20_01352 at 1416.014 kb on - strand, within MPMX20_01352 at 1416.037 kb on - strand, within MPMX20_01352 at 1416.067 kb on + strand, within MPMX20_01352 at 1416.091 kb on + strand at 1416.099 kb on - strand at 1416.386 kb on + strand, within MPMX20_01353 at 1416.394 kb on - strand, within MPMX20_01353 at 1416.446 kb on - strand, within MPMX20_01353 at 1416.492 kb on + strand, within MPMX20_01353 at 1416.514 kb on + strand, within MPMX20_01353 at 1416.680 kb on + strand, within MPMX20_01353 at 1416.680 kb on + strand, within MPMX20_01353 at 1416.707 kb on + strand, within MPMX20_01353 at 1416.724 kb on - strand, within MPMX20_01353 at 1416.724 kb on - strand, within MPMX20_01353 at 1416.762 kb on - strand, within MPMX20_01353 at 1416.836 kb on - strand, within MPMX20_01353 at 1416.914 kb on + strand, within MPMX20_01353 at 1416.919 kb on + strand at 1416.920 kb on + strand at 1416.970 kb on - strand at 1416.983 kb on + strand at 1416.990 kb on + strand at 1417.020 kb on + strand at 1417.020 kb on + strand at 1417.020 kb on + strand at 1417.022 kb on - strand at 1417.027 kb on - strand at 1417.028 kb on - strand at 1417.039 kb on + strand at 1417.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,415,323 - MPMX20_01352 0.47 -1.2 1,415,353 - MPMX20_01352 0.49 -2.0 1,415,353 - MPMX20_01352 0.49 -1.0 1,415,490 + MPMX20_01352 0.56 -2.5 1,415,490 + MPMX20_01352 0.56 -0.2 1,415,613 + MPMX20_01352 0.63 -1.8 1,415,621 - MPMX20_01352 0.64 -3.0 1,415,621 - MPMX20_01352 0.64 +0.0 1,415,746 - MPMX20_01352 0.71 -0.4 1,415,786 - MPMX20_01352 0.73 -2.0 1,415,826 - MPMX20_01352 0.75 -1.0 1,415,826 - MPMX20_01352 0.75 -1.7 1,415,947 - MPMX20_01352 0.82 -0.7 1,415,957 - MPMX20_01352 0.83 +0.6 1,415,996 + MPMX20_01352 0.85 -0.4 1,416,014 - MPMX20_01352 0.86 -0.7 1,416,014 - MPMX20_01352 0.86 -3.1 1,416,014 - MPMX20_01352 0.86 -0.2 1,416,037 - MPMX20_01352 0.87 -1.0 1,416,067 + MPMX20_01352 0.89 -3.2 1,416,091 + -1.0 1,416,099 - -2.5 1,416,386 + MPMX20_01353 0.16 -1.0 1,416,394 - MPMX20_01353 0.17 -2.1 1,416,446 - MPMX20_01353 0.24 +0.8 1,416,492 + MPMX20_01353 0.30 -1.7 1,416,514 + MPMX20_01353 0.33 -1.2 1,416,680 + MPMX20_01353 0.57 +0.3 1,416,680 + MPMX20_01353 0.57 -2.5 1,416,707 + MPMX20_01353 0.60 -1.4 1,416,724 - MPMX20_01353 0.63 -2.7 1,416,724 - MPMX20_01353 0.63 -0.5 1,416,762 - MPMX20_01353 0.68 -1.8 1,416,836 - MPMX20_01353 0.78 -1.9 1,416,914 + MPMX20_01353 0.89 -1.8 1,416,919 + -1.4 1,416,920 + -0.3 1,416,970 - -1.6 1,416,983 + +0.2 1,416,990 + -0.5 1,417,020 + -0.7 1,417,020 + -0.6 1,417,020 + +0.2 1,417,022 - -2.2 1,417,027 - -0.3 1,417,028 - -1.0 1,417,039 + -1.3 1,417,040 - -1.5
Or see this region's nucleotide sequence