Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01350

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01349 and MPMX20_01350 are separated by 557 nucleotidesMPMX20_01350 and MPMX20_01351 overlap by 7 nucleotidesMPMX20_01351 and MPMX20_01352 overlap by 1 nucleotides MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105 _01349 MPMX20_01350: MPMX20_01350 - Succinate dehydrogenase cytochrome b556 subunit, at 1,413,663 to 1,414,151 _01350 MPMX20_01351: MPMX20_01351 - Succinate dehydrogenase hydrophobic membrane anchor subunit, at 1,414,145 to 1,414,492 _01351 MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258 _01352 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1at 1412.676 kb on - strand, within MPMX20_01349at 1412.701 kb on + strand, within MPMX20_01349at 1412.743 kb on - strand, within MPMX20_01349at 1412.848 kb on - strand, within MPMX20_01349at 1412.848 kb on - strand, within MPMX20_01349at 1412.858 kb on - strand, within MPMX20_01349at 1412.888 kb on + strand, within MPMX20_01349at 1412.983 kb on + strandat 1413.004 kb on - strandat 1413.083 kb on + strandat 1413.115 kb on + strandat 1413.115 kb on + strandat 1413.123 kb on - strandat 1413.123 kb on - strandat 1413.130 kb on + strandat 1413.138 kb on - strandat 1413.138 kb on - strandat 1413.171 kb on - strandat 1413.216 kb on + strandat 1413.228 kb on + strandat 1413.228 kb on + strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.328 kb on - strandat 1413.340 kb on - strandat 1413.359 kb on + strandat 1413.401 kb on + strandat 1413.597 kb on + strandat 1413.609 kb on + strandat 1413.734 kb on + strand, within MPMX20_01350at 1413.837 kb on - strand, within MPMX20_01350at 1413.901 kb on - strand, within MPMX20_01350at 1413.936 kb on + strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.951 kb on + strand, within MPMX20_01350at 1414.062 kb on - strand, within MPMX20_01350at 1414.077 kb on + strand, within MPMX20_01350at 1414.201 kb on - strand, within MPMX20_01351at 1414.234 kb on - strand, within MPMX20_01351at 1414.328 kb on - strand, within MPMX20_01351at 1414.378 kb on + strand, within MPMX20_01351at 1414.408 kb on - strand, within MPMX20_01351at 1414.418 kb on + strand, within MPMX20_01351at 1414.429 kb on + strand, within MPMX20_01351at 1414.485 kb on - strandat 1414.485 kb on - strandat 1414.485 kb on - strandat 1414.554 kb on - strandat 1414.554 kb on - strandat 1414.628 kb on - strandat 1414.652 kb on + strandat 1414.652 kb on + strandat 1414.654 kb on - strandat 1414.660 kb on - strandat 1414.662 kb on + strandat 1414.687 kb on + strand, within MPMX20_01352at 1414.690 kb on - strand, within MPMX20_01352at 1414.715 kb on - strand, within MPMX20_01352at 1414.715 kb on - strand, within MPMX20_01352at 1414.916 kb on + strand, within MPMX20_01352at 1414.924 kb on - strand, within MPMX20_01352at 1415.020 kb on + strand, within MPMX20_01352at 1415.028 kb on - strand, within MPMX20_01352at 1415.028 kb on - strand, within MPMX20_01352at 1415.030 kb on + strand, within MPMX20_01352at 1415.038 kb on - strand, within MPMX20_01352at 1415.038 kb on - strand, within MPMX20_01352at 1415.048 kb on - strand, within MPMX20_01352at 1415.066 kb on + strand, within MPMX20_01352

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,412,676 - MPMX20_01349 0.67 -1.2
1,412,701 + MPMX20_01349 0.68 -1.2
1,412,743 - MPMX20_01349 0.72 -0.1
1,412,848 - MPMX20_01349 0.80 -1.7
1,412,848 - MPMX20_01349 0.80 -0.1
1,412,858 - MPMX20_01349 0.81 -1.2
1,412,888 + MPMX20_01349 0.83 +0.3
1,412,983 + +0.3
1,413,004 - -1.5
1,413,083 + -2.0
1,413,115 + -0.4
1,413,115 + +0.4
1,413,123 - -0.2
1,413,123 - -0.0
1,413,130 + -0.9
1,413,138 - +1.3
1,413,138 - -0.8
1,413,171 - -0.7
1,413,216 + +0.2
1,413,228 + -0.5
1,413,228 + -1.6
1,413,236 - +0.3
1,413,236 - +0.3
1,413,236 - +0.1
1,413,236 - -2.8
1,413,236 - -0.0
1,413,328 - -0.0
1,413,340 - -0.2
1,413,359 + +0.8
1,413,401 + -0.4
1,413,597 + -1.2
1,413,609 + -0.6
1,413,734 + MPMX20_01350 0.15 -0.8
1,413,837 - MPMX20_01350 0.36 -2.3
1,413,901 - MPMX20_01350 0.49 -1.2
1,413,936 + MPMX20_01350 0.56 -1.2
1,413,944 - MPMX20_01350 0.57 -0.2
1,413,944 - MPMX20_01350 0.57 -2.1
1,413,951 + MPMX20_01350 0.59 -0.0
1,414,062 - MPMX20_01350 0.82 -1.3
1,414,077 + MPMX20_01350 0.85 -1.2
1,414,201 - MPMX20_01351 0.16 +0.6
1,414,234 - MPMX20_01351 0.26 -2.7
1,414,328 - MPMX20_01351 0.53 -0.6
1,414,378 + MPMX20_01351 0.67 -1.2
1,414,408 - MPMX20_01351 0.76 -2.9
1,414,418 + MPMX20_01351 0.78 -0.7
1,414,429 + MPMX20_01351 0.82 -1.3
1,414,485 - -0.7
1,414,485 - -0.9
1,414,485 - -2.7
1,414,554 - -1.0
1,414,554 - +0.8
1,414,628 - -0.3
1,414,652 + -1.5
1,414,652 + -0.7
1,414,654 - -3.0
1,414,660 - -0.2
1,414,662 + +0.6
1,414,687 + MPMX20_01352 0.11 -1.4
1,414,690 - MPMX20_01352 0.11 -0.7
1,414,715 - MPMX20_01352 0.13 -2.0
1,414,715 - MPMX20_01352 0.13 -1.7
1,414,916 + MPMX20_01352 0.24 -2.7
1,414,924 - MPMX20_01352 0.24 -1.2
1,415,020 + MPMX20_01352 0.30 -1.1
1,415,028 - MPMX20_01352 0.30 -2.1
1,415,028 - MPMX20_01352 0.30 -2.1
1,415,030 + MPMX20_01352 0.30 +0.8
1,415,038 - MPMX20_01352 0.31 -3.1
1,415,038 - MPMX20_01352 0.31 -1.5
1,415,048 - MPMX20_01352 0.31 -2.2
1,415,066 + MPMX20_01352 0.32 +0.8

Or see this region's nucleotide sequence