Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01349 and MPMX20_01350 are separated by 557 nucleotides MPMX20_01350 and MPMX20_01351 overlap by 7 nucleotides MPMX20_01351 and MPMX20_01352 overlap by 1 nucleotides
MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105
_01349
MPMX20_01350: MPMX20_01350 - Succinate dehydrogenase cytochrome b556 subunit, at 1,413,663 to 1,414,151
_01350
MPMX20_01351: MPMX20_01351 - Succinate dehydrogenase hydrophobic membrane anchor subunit, at 1,414,145 to 1,414,492
_01351
MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258
_01352
Position (kb)
1413
1414
1415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1412.676 kb on - strand, within MPMX20_01349 at 1412.701 kb on + strand, within MPMX20_01349 at 1412.743 kb on - strand, within MPMX20_01349 at 1412.848 kb on - strand, within MPMX20_01349 at 1412.848 kb on - strand, within MPMX20_01349 at 1412.858 kb on - strand, within MPMX20_01349 at 1412.888 kb on + strand, within MPMX20_01349 at 1412.983 kb on + strand at 1413.004 kb on - strand at 1413.083 kb on + strand at 1413.115 kb on + strand at 1413.115 kb on + strand at 1413.123 kb on - strand at 1413.123 kb on - strand at 1413.130 kb on + strand at 1413.138 kb on - strand at 1413.138 kb on - strand at 1413.171 kb on - strand at 1413.216 kb on + strand at 1413.228 kb on + strand at 1413.228 kb on + strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.328 kb on - strand at 1413.340 kb on - strand at 1413.359 kb on + strand at 1413.401 kb on + strand at 1413.597 kb on + strand at 1413.609 kb on + strand at 1413.734 kb on + strand, within MPMX20_01350 at 1413.837 kb on - strand, within MPMX20_01350 at 1413.901 kb on - strand, within MPMX20_01350 at 1413.936 kb on + strand, within MPMX20_01350 at 1413.944 kb on - strand, within MPMX20_01350 at 1413.944 kb on - strand, within MPMX20_01350 at 1413.951 kb on + strand, within MPMX20_01350 at 1414.062 kb on - strand, within MPMX20_01350 at 1414.077 kb on + strand, within MPMX20_01350 at 1414.201 kb on - strand, within MPMX20_01351 at 1414.234 kb on - strand, within MPMX20_01351 at 1414.328 kb on - strand, within MPMX20_01351 at 1414.378 kb on + strand, within MPMX20_01351 at 1414.408 kb on - strand, within MPMX20_01351 at 1414.418 kb on + strand, within MPMX20_01351 at 1414.429 kb on + strand, within MPMX20_01351 at 1414.485 kb on - strand at 1414.485 kb on - strand at 1414.485 kb on - strand at 1414.554 kb on - strand at 1414.554 kb on - strand at 1414.628 kb on - strand at 1414.652 kb on + strand at 1414.652 kb on + strand at 1414.654 kb on - strand at 1414.660 kb on - strand at 1414.662 kb on + strand at 1414.687 kb on + strand, within MPMX20_01352 at 1414.690 kb on - strand, within MPMX20_01352 at 1414.715 kb on - strand, within MPMX20_01352 at 1414.715 kb on - strand, within MPMX20_01352 at 1414.916 kb on + strand, within MPMX20_01352 at 1414.924 kb on - strand, within MPMX20_01352 at 1415.020 kb on + strand, within MPMX20_01352 at 1415.028 kb on - strand, within MPMX20_01352 at 1415.028 kb on - strand, within MPMX20_01352 at 1415.030 kb on + strand, within MPMX20_01352 at 1415.038 kb on - strand, within MPMX20_01352 at 1415.038 kb on - strand, within MPMX20_01352 at 1415.048 kb on - strand, within MPMX20_01352 at 1415.066 kb on + strand, within MPMX20_01352
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,412,676 - MPMX20_01349 0.67 -1.2 1,412,701 + MPMX20_01349 0.68 -1.2 1,412,743 - MPMX20_01349 0.72 -0.1 1,412,848 - MPMX20_01349 0.80 -1.7 1,412,848 - MPMX20_01349 0.80 -0.1 1,412,858 - MPMX20_01349 0.81 -1.2 1,412,888 + MPMX20_01349 0.83 +0.3 1,412,983 + +0.3 1,413,004 - -1.5 1,413,083 + -2.0 1,413,115 + -0.4 1,413,115 + +0.4 1,413,123 - -0.2 1,413,123 - -0.0 1,413,130 + -0.9 1,413,138 - +1.3 1,413,138 - -0.8 1,413,171 - -0.7 1,413,216 + +0.2 1,413,228 + -0.5 1,413,228 + -1.6 1,413,236 - +0.3 1,413,236 - +0.3 1,413,236 - +0.1 1,413,236 - -2.8 1,413,236 - -0.0 1,413,328 - -0.0 1,413,340 - -0.2 1,413,359 + +0.8 1,413,401 + -0.4 1,413,597 + -1.2 1,413,609 + -0.6 1,413,734 + MPMX20_01350 0.15 -0.8 1,413,837 - MPMX20_01350 0.36 -2.3 1,413,901 - MPMX20_01350 0.49 -1.2 1,413,936 + MPMX20_01350 0.56 -1.2 1,413,944 - MPMX20_01350 0.57 -0.2 1,413,944 - MPMX20_01350 0.57 -2.1 1,413,951 + MPMX20_01350 0.59 -0.0 1,414,062 - MPMX20_01350 0.82 -1.3 1,414,077 + MPMX20_01350 0.85 -1.2 1,414,201 - MPMX20_01351 0.16 +0.6 1,414,234 - MPMX20_01351 0.26 -2.7 1,414,328 - MPMX20_01351 0.53 -0.6 1,414,378 + MPMX20_01351 0.67 -1.2 1,414,408 - MPMX20_01351 0.76 -2.9 1,414,418 + MPMX20_01351 0.78 -0.7 1,414,429 + MPMX20_01351 0.82 -1.3 1,414,485 - -0.7 1,414,485 - -0.9 1,414,485 - -2.7 1,414,554 - -1.0 1,414,554 - +0.8 1,414,628 - -0.3 1,414,652 + -1.5 1,414,652 + -0.7 1,414,654 - -3.0 1,414,660 - -0.2 1,414,662 + +0.6 1,414,687 + MPMX20_01352 0.11 -1.4 1,414,690 - MPMX20_01352 0.11 -0.7 1,414,715 - MPMX20_01352 0.13 -2.0 1,414,715 - MPMX20_01352 0.13 -1.7 1,414,916 + MPMX20_01352 0.24 -2.7 1,414,924 - MPMX20_01352 0.24 -1.2 1,415,020 + MPMX20_01352 0.30 -1.1 1,415,028 - MPMX20_01352 0.30 -2.1 1,415,028 - MPMX20_01352 0.30 -2.1 1,415,030 + MPMX20_01352 0.30 +0.8 1,415,038 - MPMX20_01352 0.31 -3.1 1,415,038 - MPMX20_01352 0.31 -1.5 1,415,048 - MPMX20_01352 0.31 -2.2 1,415,066 + MPMX20_01352 0.32 +0.8
Or see this region's nucleotide sequence