Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01321 and MPMX20_01322 are separated by 45 nucleotides MPMX20_01322 and MPMX20_01323 are separated by 8 nucleotides
MPMX20_01321: MPMX20_01321 - Ribonucleotide monophosphatase NagD, at 1,378,009 to 1,378,761
_01321
MPMX20_01322: MPMX20_01322 - N-acetylglucosamine repressor, at 1,378,807 to 1,380,027
_01322
MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184
_01323
Position (kb)
1378
1379
1380
1381 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1378.001 kb on - strand at 1378.084 kb on + strand at 1378.114 kb on + strand, within MPMX20_01321 at 1378.140 kb on + strand, within MPMX20_01321 at 1378.140 kb on + strand, within MPMX20_01321 at 1378.192 kb on - strand, within MPMX20_01321 at 1378.201 kb on + strand, within MPMX20_01321 at 1378.227 kb on + strand, within MPMX20_01321 at 1378.235 kb on - strand, within MPMX20_01321 at 1378.285 kb on - strand, within MPMX20_01321 at 1378.393 kb on + strand, within MPMX20_01321 at 1378.400 kb on - strand, within MPMX20_01321 at 1378.400 kb on - strand, within MPMX20_01321 at 1378.400 kb on - strand, within MPMX20_01321 at 1378.460 kb on - strand, within MPMX20_01321 at 1378.465 kb on - strand, within MPMX20_01321 at 1378.492 kb on - strand, within MPMX20_01321 at 1378.492 kb on - strand, within MPMX20_01321 at 1378.492 kb on - strand, within MPMX20_01321 at 1378.530 kb on + strand, within MPMX20_01321 at 1378.530 kb on + strand, within MPMX20_01321 at 1378.540 kb on + strand, within MPMX20_01321 at 1378.609 kb on + strand, within MPMX20_01321 at 1378.609 kb on + strand, within MPMX20_01321 at 1378.616 kb on - strand, within MPMX20_01321 at 1378.617 kb on - strand, within MPMX20_01321 at 1378.617 kb on - strand, within MPMX20_01321 at 1378.617 kb on - strand, within MPMX20_01321 at 1378.617 kb on - strand, within MPMX20_01321 at 1378.693 kb on + strand at 1378.693 kb on + strand at 1378.757 kb on + strand at 1378.757 kb on + strand at 1378.802 kb on + strand at 1378.861 kb on - strand at 1378.871 kb on - strand at 1378.881 kb on - strand at 1378.890 kb on + strand at 1378.957 kb on + strand, within MPMX20_01322 at 1378.957 kb on + strand, within MPMX20_01322 at 1378.967 kb on - strand, within MPMX20_01322 at 1379.062 kb on - strand, within MPMX20_01322 at 1379.072 kb on - strand, within MPMX20_01322 at 1379.095 kb on + strand, within MPMX20_01322 at 1379.164 kb on + strand, within MPMX20_01322 at 1379.169 kb on + strand, within MPMX20_01322 at 1379.176 kb on - strand, within MPMX20_01322 at 1379.202 kb on + strand, within MPMX20_01322 at 1379.229 kb on + strand, within MPMX20_01322 at 1379.287 kb on - strand, within MPMX20_01322 at 1379.342 kb on - strand, within MPMX20_01322 at 1379.352 kb on + strand, within MPMX20_01322 at 1379.360 kb on - strand, within MPMX20_01322 at 1379.365 kb on - strand, within MPMX20_01322 at 1379.365 kb on - strand, within MPMX20_01322 at 1379.395 kb on + strand, within MPMX20_01322 at 1379.403 kb on - strand, within MPMX20_01322 at 1379.427 kb on + strand, within MPMX20_01322 at 1379.451 kb on - strand, within MPMX20_01322 at 1379.474 kb on - strand, within MPMX20_01322 at 1379.486 kb on + strand, within MPMX20_01322 at 1379.486 kb on + strand, within MPMX20_01322 at 1379.496 kb on + strand, within MPMX20_01322 at 1379.503 kb on + strand, within MPMX20_01322 at 1379.562 kb on - strand, within MPMX20_01322 at 1379.625 kb on + strand, within MPMX20_01322 at 1379.633 kb on + strand, within MPMX20_01322 at 1379.633 kb on + strand, within MPMX20_01322 at 1379.637 kb on + strand, within MPMX20_01322 at 1379.641 kb on - strand, within MPMX20_01322 at 1379.641 kb on - strand, within MPMX20_01322 at 1379.710 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.746 kb on + strand, within MPMX20_01322 at 1379.837 kb on + strand, within MPMX20_01322 at 1379.887 kb on + strand, within MPMX20_01322 at 1379.936 kb on - strand at 1379.936 kb on - strand at 1379.971 kb on + strand at 1379.971 kb on + strand at 1379.977 kb on - strand at 1379.977 kb on - strand at 1379.979 kb on - strand at 1379.979 kb on - strand at 1380.014 kb on - strand at 1380.100 kb on + strand at 1380.121 kb on - strand at 1380.125 kb on + strand at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.178 kb on - strand, within MPMX20_01323 at 1380.181 kb on + strand, within MPMX20_01323 at 1380.194 kb on - strand, within MPMX20_01323 at 1380.194 kb on - strand, within MPMX20_01323 at 1380.203 kb on + strand, within MPMX20_01323 at 1380.254 kb on + strand, within MPMX20_01323 at 1380.399 kb on - strand, within MPMX20_01323 at 1380.497 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.521 kb on + strand, within MPMX20_01323 at 1380.531 kb on + strand, within MPMX20_01323 at 1380.534 kb on - strand, within MPMX20_01323 at 1380.537 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.700 kb on - strand, within MPMX20_01323 at 1380.806 kb on - strand, within MPMX20_01323 at 1380.815 kb on + strand, within MPMX20_01323 at 1380.837 kb on + strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.882 kb on + strand, within MPMX20_01323 at 1380.890 kb on - strand, within MPMX20_01323 at 1380.893 kb on - strand, within MPMX20_01323 at 1380.899 kb on - strand, within MPMX20_01323 at 1380.902 kb on + strand, within MPMX20_01323 at 1381.000 kb on + strand, within MPMX20_01323 at 1381.007 kb on + strand, within MPMX20_01323
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,378,001 - -0.1 1,378,084 + +0.4 1,378,114 + MPMX20_01321 0.14 -0.5 1,378,140 + MPMX20_01321 0.17 -0.2 1,378,140 + MPMX20_01321 0.17 +0.5 1,378,192 - MPMX20_01321 0.24 -0.4 1,378,201 + MPMX20_01321 0.25 -0.5 1,378,227 + MPMX20_01321 0.29 +0.4 1,378,235 - MPMX20_01321 0.30 +0.2 1,378,285 - MPMX20_01321 0.37 -0.5 1,378,393 + MPMX20_01321 0.51 +0.7 1,378,400 - MPMX20_01321 0.52 -0.6 1,378,400 - MPMX20_01321 0.52 +0.3 1,378,400 - MPMX20_01321 0.52 -0.6 1,378,460 - MPMX20_01321 0.60 -0.1 1,378,465 - MPMX20_01321 0.61 +0.2 1,378,492 - MPMX20_01321 0.64 +0.5 1,378,492 - MPMX20_01321 0.64 +0.5 1,378,492 - MPMX20_01321 0.64 -0.2 1,378,530 + MPMX20_01321 0.69 +0.3 1,378,530 + MPMX20_01321 0.69 -0.2 1,378,540 + MPMX20_01321 0.71 +0.3 1,378,609 + MPMX20_01321 0.80 -0.1 1,378,609 + MPMX20_01321 0.80 +0.4 1,378,616 - MPMX20_01321 0.81 +0.3 1,378,617 - MPMX20_01321 0.81 -0.2 1,378,617 - MPMX20_01321 0.81 -0.4 1,378,617 - MPMX20_01321 0.81 +0.4 1,378,617 - MPMX20_01321 0.81 -0.5 1,378,693 + +0.3 1,378,693 + +0.2 1,378,757 + +0.3 1,378,757 + +1.1 1,378,802 + +0.3 1,378,861 - -1.1 1,378,871 - +1.2 1,378,881 - +0.1 1,378,890 + -2.2 1,378,957 + MPMX20_01322 0.12 -1.4 1,378,957 + MPMX20_01322 0.12 +0.8 1,378,967 - MPMX20_01322 0.13 -1.2 1,379,062 - MPMX20_01322 0.21 -1.6 1,379,072 - MPMX20_01322 0.22 -0.4 1,379,095 + MPMX20_01322 0.24 -2.0 1,379,164 + MPMX20_01322 0.29 +0.8 1,379,169 + MPMX20_01322 0.30 -1.7 1,379,176 - MPMX20_01322 0.30 -0.7 1,379,202 + MPMX20_01322 0.32 -0.5 1,379,229 + MPMX20_01322 0.35 -1.4 1,379,287 - MPMX20_01322 0.39 -2.1 1,379,342 - MPMX20_01322 0.44 -3.3 1,379,352 + MPMX20_01322 0.45 -1.3 1,379,360 - MPMX20_01322 0.45 -0.3 1,379,365 - MPMX20_01322 0.46 -0.3 1,379,365 - MPMX20_01322 0.46 -1.5 1,379,395 + MPMX20_01322 0.48 -0.4 1,379,403 - MPMX20_01322 0.49 -0.4 1,379,427 + MPMX20_01322 0.51 -1.8 1,379,451 - MPMX20_01322 0.53 -1.4 1,379,474 - MPMX20_01322 0.55 -0.6 1,379,486 + MPMX20_01322 0.56 -1.5 1,379,486 + MPMX20_01322 0.56 +0.6 1,379,496 + MPMX20_01322 0.56 -1.0 1,379,503 + MPMX20_01322 0.57 -1.2 1,379,562 - MPMX20_01322 0.62 -4.1 1,379,625 + MPMX20_01322 0.67 +0.0 1,379,633 + MPMX20_01322 0.68 -1.2 1,379,633 + MPMX20_01322 0.68 -0.9 1,379,637 + MPMX20_01322 0.68 +1.8 1,379,641 - MPMX20_01322 0.68 -0.2 1,379,641 - MPMX20_01322 0.68 -0.7 1,379,710 + MPMX20_01322 0.74 -0.6 1,379,724 + MPMX20_01322 0.75 -2.6 1,379,724 + MPMX20_01322 0.75 -0.7 1,379,724 + MPMX20_01322 0.75 -1.9 1,379,724 + MPMX20_01322 0.75 +0.0 1,379,746 + MPMX20_01322 0.77 +0.6 1,379,837 + MPMX20_01322 0.84 -0.5 1,379,887 + MPMX20_01322 0.88 -0.7 1,379,936 - -1.2 1,379,936 - +0.4 1,379,971 + -1.2 1,379,971 + -1.5 1,379,977 - -0.2 1,379,977 - -0.7 1,379,979 - -2.6 1,379,979 - -2.0 1,380,014 - -2.3 1,380,100 + +0.1 1,380,121 - -0.5 1,380,125 + -1.0 1,380,169 + MPMX20_01323 0.12 +0.1 1,380,169 + MPMX20_01323 0.12 +0.1 1,380,169 + MPMX20_01323 0.12 -0.7 1,380,169 + MPMX20_01323 0.12 -2.3 1,380,169 + MPMX20_01323 0.12 +0.2 1,380,177 - MPMX20_01323 0.12 +1.3 1,380,177 - MPMX20_01323 0.12 +0.4 1,380,177 - MPMX20_01323 0.12 -0.8 1,380,177 - MPMX20_01323 0.12 -0.1 1,380,177 - MPMX20_01323 0.12 +0.4 1,380,177 - MPMX20_01323 0.12 -0.8 1,380,177 - MPMX20_01323 0.12 -0.6 1,380,177 - MPMX20_01323 0.12 +0.1 1,380,177 - MPMX20_01323 0.12 -1.2 1,380,177 - MPMX20_01323 0.12 -0.0 1,380,177 - MPMX20_01323 0.12 -0.2 1,380,177 - MPMX20_01323 0.12 -0.6 1,380,177 - MPMX20_01323 0.12 +0.7 1,380,178 - MPMX20_01323 0.12 -0.1 1,380,181 + MPMX20_01323 0.13 -0.1 1,380,194 - MPMX20_01323 0.14 -0.5 1,380,194 - MPMX20_01323 0.14 -1.0 1,380,203 + MPMX20_01323 0.15 -2.6 1,380,254 + MPMX20_01323 0.19 -0.1 1,380,399 - MPMX20_01323 0.32 -0.8 1,380,497 - MPMX20_01323 0.40 -1.0 1,380,502 - MPMX20_01323 0.41 +0.2 1,380,502 - MPMX20_01323 0.41 -0.8 1,380,521 + MPMX20_01323 0.42 -0.9 1,380,531 + MPMX20_01323 0.43 -0.8 1,380,534 - MPMX20_01323 0.43 -0.9 1,380,537 - MPMX20_01323 0.44 -1.0 1,380,557 - MPMX20_01323 0.45 +0.3 1,380,557 - MPMX20_01323 0.45 +0.3 1,380,700 - MPMX20_01323 0.58 -3.9 1,380,806 - MPMX20_01323 0.67 -0.1 1,380,815 + MPMX20_01323 0.68 +0.9 1,380,837 + MPMX20_01323 0.70 -1.2 1,380,877 - MPMX20_01323 0.73 -0.1 1,380,877 - MPMX20_01323 0.73 -1.5 1,380,882 + MPMX20_01323 0.74 -1.1 1,380,890 - MPMX20_01323 0.74 -3.1 1,380,893 - MPMX20_01323 0.75 -1.1 1,380,899 - MPMX20_01323 0.75 -0.7 1,380,902 + MPMX20_01323 0.75 -0.5 1,381,000 + MPMX20_01323 0.84 +0.1 1,381,007 + MPMX20_01323 0.85 -0.5
Or see this region's nucleotide sequence