Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01322

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01321 and MPMX20_01322 are separated by 45 nucleotidesMPMX20_01322 and MPMX20_01323 are separated by 8 nucleotides MPMX20_01321: MPMX20_01321 - Ribonucleotide monophosphatase NagD, at 1,378,009 to 1,378,761 _01321 MPMX20_01322: MPMX20_01322 - N-acetylglucosamine repressor, at 1,378,807 to 1,380,027 _01322 MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184 _01323 Position (kb) 1378 1379 1380 1381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1378.001 kb on - strandat 1378.084 kb on + strandat 1378.114 kb on + strand, within MPMX20_01321at 1378.140 kb on + strand, within MPMX20_01321at 1378.140 kb on + strand, within MPMX20_01321at 1378.192 kb on - strand, within MPMX20_01321at 1378.201 kb on + strand, within MPMX20_01321at 1378.227 kb on + strand, within MPMX20_01321at 1378.235 kb on - strand, within MPMX20_01321at 1378.285 kb on - strand, within MPMX20_01321at 1378.393 kb on + strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.460 kb on - strand, within MPMX20_01321at 1378.465 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.530 kb on + strand, within MPMX20_01321at 1378.530 kb on + strand, within MPMX20_01321at 1378.540 kb on + strand, within MPMX20_01321at 1378.609 kb on + strand, within MPMX20_01321at 1378.609 kb on + strand, within MPMX20_01321at 1378.616 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.693 kb on + strandat 1378.693 kb on + strandat 1378.757 kb on + strandat 1378.757 kb on + strandat 1378.802 kb on + strandat 1378.861 kb on - strandat 1378.871 kb on - strandat 1378.881 kb on - strandat 1378.890 kb on + strandat 1378.957 kb on + strand, within MPMX20_01322at 1378.957 kb on + strand, within MPMX20_01322at 1378.967 kb on - strand, within MPMX20_01322at 1379.062 kb on - strand, within MPMX20_01322at 1379.072 kb on - strand, within MPMX20_01322at 1379.095 kb on + strand, within MPMX20_01322at 1379.164 kb on + strand, within MPMX20_01322at 1379.169 kb on + strand, within MPMX20_01322at 1379.176 kb on - strand, within MPMX20_01322at 1379.202 kb on + strand, within MPMX20_01322at 1379.229 kb on + strand, within MPMX20_01322at 1379.287 kb on - strand, within MPMX20_01322at 1379.342 kb on - strand, within MPMX20_01322at 1379.352 kb on + strand, within MPMX20_01322at 1379.360 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.395 kb on + strand, within MPMX20_01322at 1379.403 kb on - strand, within MPMX20_01322at 1379.427 kb on + strand, within MPMX20_01322at 1379.451 kb on - strand, within MPMX20_01322at 1379.474 kb on - strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.496 kb on + strand, within MPMX20_01322at 1379.503 kb on + strand, within MPMX20_01322at 1379.562 kb on - strand, within MPMX20_01322at 1379.625 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.637 kb on + strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.710 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.746 kb on + strand, within MPMX20_01322at 1379.837 kb on + strand, within MPMX20_01322at 1379.887 kb on + strand, within MPMX20_01322at 1379.936 kb on - strandat 1379.936 kb on - strandat 1379.971 kb on + strandat 1379.971 kb on + strandat 1379.977 kb on - strandat 1379.977 kb on - strandat 1379.979 kb on - strandat 1379.979 kb on - strandat 1380.014 kb on - strandat 1380.100 kb on + strandat 1380.121 kb on - strandat 1380.125 kb on + strandat 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.178 kb on - strand, within MPMX20_01323at 1380.181 kb on + strand, within MPMX20_01323at 1380.194 kb on - strand, within MPMX20_01323at 1380.194 kb on - strand, within MPMX20_01323at 1380.203 kb on + strand, within MPMX20_01323at 1380.254 kb on + strand, within MPMX20_01323at 1380.399 kb on - strand, within MPMX20_01323at 1380.497 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.521 kb on + strand, within MPMX20_01323at 1380.531 kb on + strand, within MPMX20_01323at 1380.534 kb on - strand, within MPMX20_01323at 1380.537 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.700 kb on - strand, within MPMX20_01323at 1380.806 kb on - strand, within MPMX20_01323at 1380.815 kb on + strand, within MPMX20_01323at 1380.837 kb on + strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.882 kb on + strand, within MPMX20_01323at 1380.890 kb on - strand, within MPMX20_01323at 1380.893 kb on - strand, within MPMX20_01323at 1380.899 kb on - strand, within MPMX20_01323at 1380.902 kb on + strand, within MPMX20_01323at 1381.000 kb on + strand, within MPMX20_01323at 1381.007 kb on + strand, within MPMX20_01323

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,378,001 - -0.1
1,378,084 + +0.4
1,378,114 + MPMX20_01321 0.14 -0.5
1,378,140 + MPMX20_01321 0.17 -0.2
1,378,140 + MPMX20_01321 0.17 +0.5
1,378,192 - MPMX20_01321 0.24 -0.4
1,378,201 + MPMX20_01321 0.25 -0.5
1,378,227 + MPMX20_01321 0.29 +0.4
1,378,235 - MPMX20_01321 0.30 +0.2
1,378,285 - MPMX20_01321 0.37 -0.5
1,378,393 + MPMX20_01321 0.51 +0.7
1,378,400 - MPMX20_01321 0.52 -0.6
1,378,400 - MPMX20_01321 0.52 +0.3
1,378,400 - MPMX20_01321 0.52 -0.6
1,378,460 - MPMX20_01321 0.60 -0.1
1,378,465 - MPMX20_01321 0.61 +0.2
1,378,492 - MPMX20_01321 0.64 +0.5
1,378,492 - MPMX20_01321 0.64 +0.5
1,378,492 - MPMX20_01321 0.64 -0.2
1,378,530 + MPMX20_01321 0.69 +0.3
1,378,530 + MPMX20_01321 0.69 -0.2
1,378,540 + MPMX20_01321 0.71 +0.3
1,378,609 + MPMX20_01321 0.80 -0.1
1,378,609 + MPMX20_01321 0.80 +0.4
1,378,616 - MPMX20_01321 0.81 +0.3
1,378,617 - MPMX20_01321 0.81 -0.2
1,378,617 - MPMX20_01321 0.81 -0.4
1,378,617 - MPMX20_01321 0.81 +0.4
1,378,617 - MPMX20_01321 0.81 -0.5
1,378,693 + +0.3
1,378,693 + +0.2
1,378,757 + +0.3
1,378,757 + +1.1
1,378,802 + +0.3
1,378,861 - -1.1
1,378,871 - +1.2
1,378,881 - +0.1
1,378,890 + -2.2
1,378,957 + MPMX20_01322 0.12 -1.4
1,378,957 + MPMX20_01322 0.12 +0.8
1,378,967 - MPMX20_01322 0.13 -1.2
1,379,062 - MPMX20_01322 0.21 -1.6
1,379,072 - MPMX20_01322 0.22 -0.4
1,379,095 + MPMX20_01322 0.24 -2.0
1,379,164 + MPMX20_01322 0.29 +0.8
1,379,169 + MPMX20_01322 0.30 -1.7
1,379,176 - MPMX20_01322 0.30 -0.7
1,379,202 + MPMX20_01322 0.32 -0.5
1,379,229 + MPMX20_01322 0.35 -1.4
1,379,287 - MPMX20_01322 0.39 -2.1
1,379,342 - MPMX20_01322 0.44 -3.3
1,379,352 + MPMX20_01322 0.45 -1.3
1,379,360 - MPMX20_01322 0.45 -0.3
1,379,365 - MPMX20_01322 0.46 -0.3
1,379,365 - MPMX20_01322 0.46 -1.5
1,379,395 + MPMX20_01322 0.48 -0.4
1,379,403 - MPMX20_01322 0.49 -0.4
1,379,427 + MPMX20_01322 0.51 -1.8
1,379,451 - MPMX20_01322 0.53 -1.4
1,379,474 - MPMX20_01322 0.55 -0.6
1,379,486 + MPMX20_01322 0.56 -1.5
1,379,486 + MPMX20_01322 0.56 +0.6
1,379,496 + MPMX20_01322 0.56 -1.0
1,379,503 + MPMX20_01322 0.57 -1.2
1,379,562 - MPMX20_01322 0.62 -4.1
1,379,625 + MPMX20_01322 0.67 +0.0
1,379,633 + MPMX20_01322 0.68 -1.2
1,379,633 + MPMX20_01322 0.68 -0.9
1,379,637 + MPMX20_01322 0.68 +1.8
1,379,641 - MPMX20_01322 0.68 -0.2
1,379,641 - MPMX20_01322 0.68 -0.7
1,379,710 + MPMX20_01322 0.74 -0.6
1,379,724 + MPMX20_01322 0.75 -2.6
1,379,724 + MPMX20_01322 0.75 -0.7
1,379,724 + MPMX20_01322 0.75 -1.9
1,379,724 + MPMX20_01322 0.75 +0.0
1,379,746 + MPMX20_01322 0.77 +0.6
1,379,837 + MPMX20_01322 0.84 -0.5
1,379,887 + MPMX20_01322 0.88 -0.7
1,379,936 - -1.2
1,379,936 - +0.4
1,379,971 + -1.2
1,379,971 + -1.5
1,379,977 - -0.2
1,379,977 - -0.7
1,379,979 - -2.6
1,379,979 - -2.0
1,380,014 - -2.3
1,380,100 + +0.1
1,380,121 - -0.5
1,380,125 + -1.0
1,380,169 + MPMX20_01323 0.12 +0.1
1,380,169 + MPMX20_01323 0.12 +0.1
1,380,169 + MPMX20_01323 0.12 -0.7
1,380,169 + MPMX20_01323 0.12 -2.3
1,380,169 + MPMX20_01323 0.12 +0.2
1,380,177 - MPMX20_01323 0.12 +1.3
1,380,177 - MPMX20_01323 0.12 +0.4
1,380,177 - MPMX20_01323 0.12 -0.8
1,380,177 - MPMX20_01323 0.12 -0.1
1,380,177 - MPMX20_01323 0.12 +0.4
1,380,177 - MPMX20_01323 0.12 -0.8
1,380,177 - MPMX20_01323 0.12 -0.6
1,380,177 - MPMX20_01323 0.12 +0.1
1,380,177 - MPMX20_01323 0.12 -1.2
1,380,177 - MPMX20_01323 0.12 -0.0
1,380,177 - MPMX20_01323 0.12 -0.2
1,380,177 - MPMX20_01323 0.12 -0.6
1,380,177 - MPMX20_01323 0.12 +0.7
1,380,178 - MPMX20_01323 0.12 -0.1
1,380,181 + MPMX20_01323 0.13 -0.1
1,380,194 - MPMX20_01323 0.14 -0.5
1,380,194 - MPMX20_01323 0.14 -1.0
1,380,203 + MPMX20_01323 0.15 -2.6
1,380,254 + MPMX20_01323 0.19 -0.1
1,380,399 - MPMX20_01323 0.32 -0.8
1,380,497 - MPMX20_01323 0.40 -1.0
1,380,502 - MPMX20_01323 0.41 +0.2
1,380,502 - MPMX20_01323 0.41 -0.8
1,380,521 + MPMX20_01323 0.42 -0.9
1,380,531 + MPMX20_01323 0.43 -0.8
1,380,534 - MPMX20_01323 0.43 -0.9
1,380,537 - MPMX20_01323 0.44 -1.0
1,380,557 - MPMX20_01323 0.45 +0.3
1,380,557 - MPMX20_01323 0.45 +0.3
1,380,700 - MPMX20_01323 0.58 -3.9
1,380,806 - MPMX20_01323 0.67 -0.1
1,380,815 + MPMX20_01323 0.68 +0.9
1,380,837 + MPMX20_01323 0.70 -1.2
1,380,877 - MPMX20_01323 0.73 -0.1
1,380,877 - MPMX20_01323 0.73 -1.5
1,380,882 + MPMX20_01323 0.74 -1.1
1,380,890 - MPMX20_01323 0.74 -3.1
1,380,893 - MPMX20_01323 0.75 -1.1
1,380,899 - MPMX20_01323 0.75 -0.7
1,380,902 + MPMX20_01323 0.75 -0.5
1,381,000 + MPMX20_01323 0.84 +0.1
1,381,007 + MPMX20_01323 0.85 -0.5

Or see this region's nucleotide sequence