Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01286

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01284 and MPMX20_01285 are separated by 67 nucleotidesMPMX20_01285 and MPMX20_01286 are separated by 126 nucleotidesMPMX20_01286 and MPMX20_01287 are separated by 81 nucleotides MPMX20_01284: MPMX20_01284 - Putative fluoride ion transporter CrcB, at 1,346,160 to 1,346,543 _01284 MPMX20_01285: MPMX20_01285 - Deaminated glutathione amidase, at 1,346,611 to 1,347,399 _01285 MPMX20_01286: MPMX20_01286 - Sec-independent protein translocase protein TatE, at 1,347,526 to 1,347,729 _01286 MPMX20_01287: MPMX20_01287 - Lipoyl synthase, at 1,347,811 to 1,348,776 _01287 Position (kb) 1347 1348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1346.543 kb on + strandat 1346.639 kb on - strandat 1346.680 kb on + strandat 1346.695 kb on - strand, within MPMX20_01285at 1346.732 kb on - strand, within MPMX20_01285at 1346.736 kb on + strand, within MPMX20_01285at 1346.756 kb on + strand, within MPMX20_01285at 1346.756 kb on + strand, within MPMX20_01285at 1346.764 kb on - strand, within MPMX20_01285at 1346.769 kb on + strand, within MPMX20_01285at 1346.774 kb on + strand, within MPMX20_01285at 1346.849 kb on + strand, within MPMX20_01285at 1346.857 kb on - strand, within MPMX20_01285at 1346.865 kb on - strand, within MPMX20_01285at 1346.865 kb on - strand, within MPMX20_01285at 1347.007 kb on - strand, within MPMX20_01285at 1347.012 kb on + strand, within MPMX20_01285at 1347.020 kb on - strand, within MPMX20_01285at 1347.026 kb on + strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.068 kb on - strand, within MPMX20_01285at 1347.089 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.148 kb on + strand, within MPMX20_01285at 1347.165 kb on + strand, within MPMX20_01285at 1347.166 kb on - strand, within MPMX20_01285at 1347.186 kb on + strand, within MPMX20_01285at 1347.194 kb on - strand, within MPMX20_01285at 1347.202 kb on + strand, within MPMX20_01285at 1347.209 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.246 kb on - strand, within MPMX20_01285at 1347.251 kb on - strand, within MPMX20_01285at 1347.251 kb on - strand, within MPMX20_01285at 1347.266 kb on + strand, within MPMX20_01285at 1347.436 kb on + strandat 1347.463 kb on - strandat 1347.463 kb on - strandat 1347.463 kb on - strandat 1347.611 kb on + strand, within MPMX20_01286at 1347.616 kb on + strand, within MPMX20_01286at 1347.657 kb on - strand, within MPMX20_01286at 1347.737 kb on + strandat 1347.745 kb on - strandat 1347.745 kb on - strandat 1347.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,346,543 + -0.4
1,346,639 - +0.1
1,346,680 + -0.6
1,346,695 - MPMX20_01285 0.11 -1.3
1,346,732 - MPMX20_01285 0.15 +0.2
1,346,736 + MPMX20_01285 0.16 +0.2
1,346,756 + MPMX20_01285 0.18 -1.1
1,346,756 + MPMX20_01285 0.18 +0.2
1,346,764 - MPMX20_01285 0.19 +0.4
1,346,769 + MPMX20_01285 0.20 +0.5
1,346,774 + MPMX20_01285 0.21 +0.5
1,346,849 + MPMX20_01285 0.30 +0.7
1,346,857 - MPMX20_01285 0.31 +1.0
1,346,865 - MPMX20_01285 0.32 +0.7
1,346,865 - MPMX20_01285 0.32 -0.0
1,347,007 - MPMX20_01285 0.50 +0.8
1,347,012 + MPMX20_01285 0.51 -0.4
1,347,020 - MPMX20_01285 0.52 -1.8
1,347,026 + MPMX20_01285 0.53 +1.5
1,347,058 - MPMX20_01285 0.57 -0.6
1,347,058 - MPMX20_01285 0.57 -0.8
1,347,058 - MPMX20_01285 0.57 +0.5
1,347,068 - MPMX20_01285 0.58 +0.1
1,347,089 + MPMX20_01285 0.61 -0.8
1,347,129 + MPMX20_01285 0.66 -0.5
1,347,129 + MPMX20_01285 0.66 +0.5
1,347,129 + MPMX20_01285 0.66 +1.9
1,347,137 - MPMX20_01285 0.67 +0.3
1,347,137 - MPMX20_01285 0.67 +0.2
1,347,137 - MPMX20_01285 0.67 -0.6
1,347,137 - MPMX20_01285 0.67 -0.3
1,347,137 - MPMX20_01285 0.67 -0.9
1,347,148 + MPMX20_01285 0.68 +0.2
1,347,165 + MPMX20_01285 0.70 +0.5
1,347,166 - MPMX20_01285 0.70 +2.3
1,347,186 + MPMX20_01285 0.73 -0.0
1,347,194 - MPMX20_01285 0.74 -0.9
1,347,202 + MPMX20_01285 0.75 +0.9
1,347,209 + MPMX20_01285 0.76 +0.3
1,347,243 + MPMX20_01285 0.80 +0.1
1,347,243 + MPMX20_01285 0.80 -0.5
1,347,243 + MPMX20_01285 0.80 +0.4
1,347,246 - MPMX20_01285 0.80 +0.2
1,347,251 - MPMX20_01285 0.81 +1.1
1,347,251 - MPMX20_01285 0.81 +0.6
1,347,266 + MPMX20_01285 0.83 +0.2
1,347,436 + -0.5
1,347,463 - -3.2
1,347,463 - -1.3
1,347,463 - -2.1
1,347,611 + MPMX20_01286 0.42 +0.9
1,347,616 + MPMX20_01286 0.44 -2.3
1,347,657 - MPMX20_01286 0.64 -3.1
1,347,737 + -1.2
1,347,745 - -0.2
1,347,745 - -0.6
1,347,745 - +0.2

Or see this region's nucleotide sequence