Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01096 and MPMX20_01097 are separated by 84 nucleotides MPMX20_01097 and MPMX20_01098 overlap by 4 nucleotides MPMX20_01098 and MPMX20_01099 are separated by 212 nucleotides
MPMX20_01096: MPMX20_01096 - tRNA 2-selenouridine synthase, at 1,156,555 to 1,157,625
_01096
MPMX20_01097: MPMX20_01097 - N5-carboxyaminoimidazole ribonucleotide synthase, at 1,157,710 to 1,158,777
_01097
MPMX20_01098: MPMX20_01098 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,158,774 to 1,159,283
_01098
MPMX20_01099: MPMX20_01099 - hypothetical protein, at 1,159,496 to 1,159,705
_01099
Position (kb)
1157
1158
1159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1156.724 kb on + strand, within MPMX20_01096 at 1156.732 kb on - strand, within MPMX20_01096 at 1156.757 kb on - strand, within MPMX20_01096 at 1156.772 kb on - strand, within MPMX20_01096 at 1156.803 kb on + strand, within MPMX20_01096 at 1156.811 kb on - strand, within MPMX20_01096 at 1156.982 kb on - strand, within MPMX20_01096 at 1157.084 kb on - strand, within MPMX20_01096 at 1157.103 kb on - strand, within MPMX20_01096 at 1157.141 kb on + strand, within MPMX20_01096 at 1157.141 kb on + strand, within MPMX20_01096 at 1157.232 kb on + strand, within MPMX20_01096 at 1157.353 kb on - strand, within MPMX20_01096 at 1157.390 kb on + strand, within MPMX20_01096 at 1157.390 kb on + strand, within MPMX20_01096 at 1157.416 kb on - strand, within MPMX20_01096 at 1157.427 kb on + strand, within MPMX20_01096 at 1157.509 kb on - strand, within MPMX20_01096 at 1157.581 kb on + strand at 1157.686 kb on + strand at 1157.686 kb on + strand at 1157.687 kb on - strand at 1157.694 kb on - strand at 1157.700 kb on - strand at 1157.843 kb on - strand, within MPMX20_01097 at 1157.889 kb on + strand, within MPMX20_01097 at 1157.997 kb on + strand, within MPMX20_01097 at 1158.051 kb on - strand, within MPMX20_01097 at 1158.057 kb on + strand, within MPMX20_01097 at 1158.057 kb on + strand, within MPMX20_01097 at 1158.144 kb on - strand, within MPMX20_01097 at 1158.174 kb on + strand, within MPMX20_01097 at 1158.179 kb on + strand, within MPMX20_01097 at 1158.179 kb on + strand, within MPMX20_01097 at 1158.187 kb on - strand, within MPMX20_01097 at 1158.239 kb on - strand, within MPMX20_01097 at 1158.263 kb on - strand, within MPMX20_01097 at 1158.270 kb on - strand, within MPMX20_01097 at 1158.299 kb on + strand, within MPMX20_01097 at 1158.318 kb on + strand, within MPMX20_01097 at 1158.326 kb on - strand, within MPMX20_01097 at 1158.326 kb on - strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.395 kb on - strand, within MPMX20_01097 at 1158.395 kb on - strand, within MPMX20_01097 at 1158.609 kb on - strand, within MPMX20_01097 at 1158.709 kb on - strand at 1158.801 kb on + strand at 1158.801 kb on + strand at 1158.816 kb on + strand at 1158.816 kb on + strand at 1158.816 kb on + strand at 1158.857 kb on - strand, within MPMX20_01098 at 1158.972 kb on - strand, within MPMX20_01098 at 1158.987 kb on + strand, within MPMX20_01098 at 1158.987 kb on + strand, within MPMX20_01098 at 1158.995 kb on - strand, within MPMX20_01098 at 1159.014 kb on + strand, within MPMX20_01098 at 1159.069 kb on - strand, within MPMX20_01098 at 1159.091 kb on + strand, within MPMX20_01098 at 1159.141 kb on + strand, within MPMX20_01098 at 1159.149 kb on - strand, within MPMX20_01098 at 1159.149 kb on - strand, within MPMX20_01098 at 1159.231 kb on + strand, within MPMX20_01098 at 1159.239 kb on - strand at 1159.515 kb on - strand at 1159.612 kb on + strand, within MPMX20_01099 at 1159.615 kb on - strand, within MPMX20_01099 at 1159.626 kb on + strand, within MPMX20_01099 at 1159.747 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,156,724 + MPMX20_01096 0.16 +0.4 1,156,732 - MPMX20_01096 0.17 +0.1 1,156,757 - MPMX20_01096 0.19 -0.6 1,156,772 - MPMX20_01096 0.20 +0.2 1,156,803 + MPMX20_01096 0.23 -2.4 1,156,811 - MPMX20_01096 0.24 +0.5 1,156,982 - MPMX20_01096 0.40 +0.4 1,157,084 - MPMX20_01096 0.49 -0.4 1,157,103 - MPMX20_01096 0.51 +0.2 1,157,141 + MPMX20_01096 0.55 -0.4 1,157,141 + MPMX20_01096 0.55 +0.8 1,157,232 + MPMX20_01096 0.63 +0.2 1,157,353 - MPMX20_01096 0.75 +0.4 1,157,390 + MPMX20_01096 0.78 +1.0 1,157,390 + MPMX20_01096 0.78 -0.1 1,157,416 - MPMX20_01096 0.80 -1.8 1,157,427 + MPMX20_01096 0.81 +0.5 1,157,509 - MPMX20_01096 0.89 +0.1 1,157,581 + +0.2 1,157,686 + -0.4 1,157,686 + -0.7 1,157,687 - -0.2 1,157,694 - +1.1 1,157,700 - -0.9 1,157,843 - MPMX20_01097 0.12 -1.0 1,157,889 + MPMX20_01097 0.17 -0.5 1,157,997 + MPMX20_01097 0.27 -0.7 1,158,051 - MPMX20_01097 0.32 -1.4 1,158,057 + MPMX20_01097 0.32 -1.0 1,158,057 + MPMX20_01097 0.32 -1.5 1,158,144 - MPMX20_01097 0.41 -1.1 1,158,174 + MPMX20_01097 0.43 -0.9 1,158,179 + MPMX20_01097 0.44 -2.3 1,158,179 + MPMX20_01097 0.44 -0.1 1,158,187 - MPMX20_01097 0.45 -2.4 1,158,239 - MPMX20_01097 0.50 -0.4 1,158,263 - MPMX20_01097 0.52 -3.6 1,158,270 - MPMX20_01097 0.52 -0.1 1,158,299 + MPMX20_01097 0.55 -1.8 1,158,318 + MPMX20_01097 0.57 -0.0 1,158,326 - MPMX20_01097 0.58 -0.8 1,158,326 - MPMX20_01097 0.58 -1.7 1,158,387 + MPMX20_01097 0.63 +0.4 1,158,387 + MPMX20_01097 0.63 +0.4 1,158,387 + MPMX20_01097 0.63 +0.1 1,158,395 - MPMX20_01097 0.64 -1.9 1,158,395 - MPMX20_01097 0.64 -0.5 1,158,609 - MPMX20_01097 0.84 -1.0 1,158,709 - -1.1 1,158,801 + -0.5 1,158,801 + -2.1 1,158,816 + +1.1 1,158,816 + -1.1 1,158,816 + -2.3 1,158,857 - MPMX20_01098 0.16 -2.3 1,158,972 - MPMX20_01098 0.39 -1.4 1,158,987 + MPMX20_01098 0.42 +2.2 1,158,987 + MPMX20_01098 0.42 +0.9 1,158,995 - MPMX20_01098 0.43 +0.2 1,159,014 + MPMX20_01098 0.47 -0.6 1,159,069 - MPMX20_01098 0.58 -1.8 1,159,091 + MPMX20_01098 0.62 -3.0 1,159,141 + MPMX20_01098 0.72 -0.8 1,159,149 - MPMX20_01098 0.74 -0.0 1,159,149 - MPMX20_01098 0.74 -1.2 1,159,231 + MPMX20_01098 0.90 -0.1 1,159,239 - +0.1 1,159,515 - +0.5 1,159,612 + MPMX20_01099 0.55 -0.4 1,159,615 - MPMX20_01099 0.57 -0.5 1,159,626 + MPMX20_01099 0.62 -1.1 1,159,747 + +0.3
Or see this region's nucleotide sequence