Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01097

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01096 and MPMX20_01097 are separated by 84 nucleotidesMPMX20_01097 and MPMX20_01098 overlap by 4 nucleotidesMPMX20_01098 and MPMX20_01099 are separated by 212 nucleotides MPMX20_01096: MPMX20_01096 - tRNA 2-selenouridine synthase, at 1,156,555 to 1,157,625 _01096 MPMX20_01097: MPMX20_01097 - N5-carboxyaminoimidazole ribonucleotide synthase, at 1,157,710 to 1,158,777 _01097 MPMX20_01098: MPMX20_01098 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,158,774 to 1,159,283 _01098 MPMX20_01099: MPMX20_01099 - hypothetical protein, at 1,159,496 to 1,159,705 _01099 Position (kb) 1157 1158 1159Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1156.724 kb on + strand, within MPMX20_01096at 1156.732 kb on - strand, within MPMX20_01096at 1156.757 kb on - strand, within MPMX20_01096at 1156.772 kb on - strand, within MPMX20_01096at 1156.803 kb on + strand, within MPMX20_01096at 1156.811 kb on - strand, within MPMX20_01096at 1156.982 kb on - strand, within MPMX20_01096at 1157.084 kb on - strand, within MPMX20_01096at 1157.103 kb on - strand, within MPMX20_01096at 1157.141 kb on + strand, within MPMX20_01096at 1157.141 kb on + strand, within MPMX20_01096at 1157.232 kb on + strand, within MPMX20_01096at 1157.353 kb on - strand, within MPMX20_01096at 1157.390 kb on + strand, within MPMX20_01096at 1157.390 kb on + strand, within MPMX20_01096at 1157.416 kb on - strand, within MPMX20_01096at 1157.427 kb on + strand, within MPMX20_01096at 1157.509 kb on - strand, within MPMX20_01096at 1157.581 kb on + strandat 1157.686 kb on + strandat 1157.686 kb on + strandat 1157.687 kb on - strandat 1157.694 kb on - strandat 1157.700 kb on - strandat 1157.843 kb on - strand, within MPMX20_01097at 1157.889 kb on + strand, within MPMX20_01097at 1157.997 kb on + strand, within MPMX20_01097at 1158.051 kb on - strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.144 kb on - strand, within MPMX20_01097at 1158.174 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.187 kb on - strand, within MPMX20_01097at 1158.239 kb on - strand, within MPMX20_01097at 1158.263 kb on - strand, within MPMX20_01097at 1158.270 kb on - strand, within MPMX20_01097at 1158.299 kb on + strand, within MPMX20_01097at 1158.318 kb on + strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.609 kb on - strand, within MPMX20_01097at 1158.709 kb on - strandat 1158.801 kb on + strandat 1158.801 kb on + strandat 1158.816 kb on + strandat 1158.816 kb on + strandat 1158.816 kb on + strandat 1158.857 kb on - strand, within MPMX20_01098at 1158.972 kb on - strand, within MPMX20_01098at 1158.987 kb on + strand, within MPMX20_01098at 1158.987 kb on + strand, within MPMX20_01098at 1158.995 kb on - strand, within MPMX20_01098at 1159.014 kb on + strand, within MPMX20_01098at 1159.069 kb on - strand, within MPMX20_01098at 1159.091 kb on + strand, within MPMX20_01098at 1159.141 kb on + strand, within MPMX20_01098at 1159.149 kb on - strand, within MPMX20_01098at 1159.149 kb on - strand, within MPMX20_01098at 1159.231 kb on + strand, within MPMX20_01098at 1159.239 kb on - strandat 1159.515 kb on - strandat 1159.612 kb on + strand, within MPMX20_01099at 1159.615 kb on - strand, within MPMX20_01099at 1159.626 kb on + strand, within MPMX20_01099at 1159.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,156,724 + MPMX20_01096 0.16 +0.4
1,156,732 - MPMX20_01096 0.17 +0.1
1,156,757 - MPMX20_01096 0.19 -0.6
1,156,772 - MPMX20_01096 0.20 +0.2
1,156,803 + MPMX20_01096 0.23 -2.4
1,156,811 - MPMX20_01096 0.24 +0.5
1,156,982 - MPMX20_01096 0.40 +0.4
1,157,084 - MPMX20_01096 0.49 -0.4
1,157,103 - MPMX20_01096 0.51 +0.2
1,157,141 + MPMX20_01096 0.55 -0.4
1,157,141 + MPMX20_01096 0.55 +0.8
1,157,232 + MPMX20_01096 0.63 +0.2
1,157,353 - MPMX20_01096 0.75 +0.4
1,157,390 + MPMX20_01096 0.78 +1.0
1,157,390 + MPMX20_01096 0.78 -0.1
1,157,416 - MPMX20_01096 0.80 -1.8
1,157,427 + MPMX20_01096 0.81 +0.5
1,157,509 - MPMX20_01096 0.89 +0.1
1,157,581 + +0.2
1,157,686 + -0.4
1,157,686 + -0.7
1,157,687 - -0.2
1,157,694 - +1.1
1,157,700 - -0.9
1,157,843 - MPMX20_01097 0.12 -1.0
1,157,889 + MPMX20_01097 0.17 -0.5
1,157,997 + MPMX20_01097 0.27 -0.7
1,158,051 - MPMX20_01097 0.32 -1.4
1,158,057 + MPMX20_01097 0.32 -1.0
1,158,057 + MPMX20_01097 0.32 -1.5
1,158,144 - MPMX20_01097 0.41 -1.1
1,158,174 + MPMX20_01097 0.43 -0.9
1,158,179 + MPMX20_01097 0.44 -2.3
1,158,179 + MPMX20_01097 0.44 -0.1
1,158,187 - MPMX20_01097 0.45 -2.4
1,158,239 - MPMX20_01097 0.50 -0.4
1,158,263 - MPMX20_01097 0.52 -3.6
1,158,270 - MPMX20_01097 0.52 -0.1
1,158,299 + MPMX20_01097 0.55 -1.8
1,158,318 + MPMX20_01097 0.57 -0.0
1,158,326 - MPMX20_01097 0.58 -0.8
1,158,326 - MPMX20_01097 0.58 -1.7
1,158,387 + MPMX20_01097 0.63 +0.4
1,158,387 + MPMX20_01097 0.63 +0.4
1,158,387 + MPMX20_01097 0.63 +0.1
1,158,395 - MPMX20_01097 0.64 -1.9
1,158,395 - MPMX20_01097 0.64 -0.5
1,158,609 - MPMX20_01097 0.84 -1.0
1,158,709 - -1.1
1,158,801 + -0.5
1,158,801 + -2.1
1,158,816 + +1.1
1,158,816 + -1.1
1,158,816 + -2.3
1,158,857 - MPMX20_01098 0.16 -2.3
1,158,972 - MPMX20_01098 0.39 -1.4
1,158,987 + MPMX20_01098 0.42 +2.2
1,158,987 + MPMX20_01098 0.42 +0.9
1,158,995 - MPMX20_01098 0.43 +0.2
1,159,014 + MPMX20_01098 0.47 -0.6
1,159,069 - MPMX20_01098 0.58 -1.8
1,159,091 + MPMX20_01098 0.62 -3.0
1,159,141 + MPMX20_01098 0.72 -0.8
1,159,149 - MPMX20_01098 0.74 -0.0
1,159,149 - MPMX20_01098 0.74 -1.2
1,159,231 + MPMX20_01098 0.90 -0.1
1,159,239 - +0.1
1,159,515 - +0.5
1,159,612 + MPMX20_01099 0.55 -0.4
1,159,615 - MPMX20_01099 0.57 -0.5
1,159,626 + MPMX20_01099 0.62 -1.1
1,159,747 + +0.3

Or see this region's nucleotide sequence