Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01029 and MPMX20_01030 are separated by 183 nucleotides MPMX20_01030 and MPMX20_01031 are separated by 210 nucleotides MPMX20_01031 and MPMX20_01032 are separated by 212 nucleotides
MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840
_01029
MPMX20_01030: MPMX20_01030 - Lon protease, at 1,084,024 to 1,086,378
_01030
MPMX20_01031: MPMX20_01031 - DNA-binding protein HU-beta, at 1,086,589 to 1,086,861
_01031
MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945
_01032
Position (kb)
1084
1085
1086
1087 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1083.284 kb on - strand, within MPMX20_01029 at 1083.393 kb on - strand, within MPMX20_01029 at 1083.434 kb on - strand, within MPMX20_01029 at 1083.531 kb on + strand, within MPMX20_01029 at 1083.539 kb on - strand, within MPMX20_01029 at 1083.573 kb on + strand, within MPMX20_01029 at 1083.713 kb on - strand at 1083.783 kb on + strand at 1083.940 kb on - strand at 1084.028 kb on + strand at 1084.078 kb on + strand at 1084.091 kb on - strand at 1084.107 kb on - strand at 1084.107 kb on - strand at 1084.291 kb on - strand, within MPMX20_01030 at 1084.442 kb on - strand, within MPMX20_01030 at 1084.472 kb on - strand, within MPMX20_01030 at 1084.489 kb on + strand, within MPMX20_01030 at 1084.504 kb on - strand, within MPMX20_01030 at 1084.537 kb on - strand, within MPMX20_01030 at 1084.641 kb on + strand, within MPMX20_01030 at 1084.760 kb on - strand, within MPMX20_01030 at 1084.876 kb on - strand, within MPMX20_01030 at 1084.917 kb on + strand, within MPMX20_01030 at 1085.026 kb on + strand, within MPMX20_01030 at 1085.034 kb on - strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.041 kb on + strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.049 kb on - strand, within MPMX20_01030 at 1085.077 kb on - strand, within MPMX20_01030 at 1085.079 kb on + strand, within MPMX20_01030 at 1085.466 kb on + strand, within MPMX20_01030 at 1085.483 kb on + strand, within MPMX20_01030 at 1085.596 kb on - strand, within MPMX20_01030 at 1085.598 kb on - strand, within MPMX20_01030 at 1085.598 kb on - strand, within MPMX20_01030 at 1085.809 kb on + strand, within MPMX20_01030 at 1085.809 kb on + strand, within MPMX20_01030 at 1085.903 kb on - strand, within MPMX20_01030 at 1085.903 kb on - strand, within MPMX20_01030 at 1086.163 kb on - strand at 1086.213 kb on + strand at 1086.291 kb on + strand at 1086.291 kb on + strand at 1086.393 kb on - strand at 1086.393 kb on - strand at 1086.405 kb on + strand at 1086.405 kb on + strand at 1086.464 kb on + strand at 1086.464 kb on - strand at 1086.469 kb on + strand at 1086.469 kb on + strand at 1086.487 kb on - strand at 1086.495 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.502 kb on + strand at 1086.515 kb on - strand at 1086.576 kb on + strand at 1086.599 kb on - strand at 1086.718 kb on - strand, within MPMX20_01031 at 1086.726 kb on - strand, within MPMX20_01031 at 1086.742 kb on + strand, within MPMX20_01031 at 1086.891 kb on + strand at 1086.891 kb on + strand at 1086.891 kb on + strand at 1086.899 kb on - strand at 1086.899 kb on - strand at 1086.933 kb on + strand at 1086.936 kb on - strand at 1086.936 kb on - strand at 1086.936 kb on - strand at 1086.941 kb on - strand at 1086.941 kb on - strand at 1086.941 kb on - strand at 1087.001 kb on - strand at 1087.046 kb on - strand at 1087.046 kb on - strand at 1087.084 kb on + strand at 1087.084 kb on - strand at 1087.095 kb on + strand at 1087.095 kb on + strand at 1087.105 kb on + strand at 1087.165 kb on + strand at 1087.233 kb on - strand at 1087.259 kb on + strand at 1087.267 kb on - strand, within MPMX20_01032 at 1087.281 kb on - strand, within MPMX20_01032
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,083,284 - MPMX20_01029 0.56 -2.6 1,083,393 - MPMX20_01029 0.65 -1.7 1,083,434 - MPMX20_01029 0.68 -0.1 1,083,531 + MPMX20_01029 0.76 -1.1 1,083,539 - MPMX20_01029 0.76 +0.3 1,083,573 + MPMX20_01029 0.79 -0.7 1,083,713 - -2.1 1,083,783 + -0.1 1,083,940 - -0.5 1,084,028 + -1.5 1,084,078 + -1.9 1,084,091 - -1.5 1,084,107 - -2.3 1,084,107 - -1.9 1,084,291 - MPMX20_01030 0.11 -2.1 1,084,442 - MPMX20_01030 0.18 -0.4 1,084,472 - MPMX20_01030 0.19 -2.0 1,084,489 + MPMX20_01030 0.20 -2.8 1,084,504 - MPMX20_01030 0.20 -3.0 1,084,537 - MPMX20_01030 0.22 -0.4 1,084,641 + MPMX20_01030 0.26 -1.6 1,084,760 - MPMX20_01030 0.31 +0.9 1,084,876 - MPMX20_01030 0.36 -0.6 1,084,917 + MPMX20_01030 0.38 +0.1 1,085,026 + MPMX20_01030 0.43 -2.8 1,085,034 - MPMX20_01030 0.43 -0.1 1,085,041 + MPMX20_01030 0.43 -0.9 1,085,041 + MPMX20_01030 0.43 -0.4 1,085,041 + MPMX20_01030 0.43 -1.0 1,085,041 + MPMX20_01030 0.43 -1.1 1,085,041 + MPMX20_01030 0.43 -1.3 1,085,041 + MPMX20_01030 0.43 -1.1 1,085,041 + MPMX20_01030 0.43 -1.9 1,085,041 + MPMX20_01030 0.43 +0.9 1,085,041 + MPMX20_01030 0.43 -3.6 1,085,041 + MPMX20_01030 0.43 +1.3 1,085,041 + MPMX20_01030 0.43 -0.7 1,085,041 + MPMX20_01030 0.43 +0.3 1,085,049 - MPMX20_01030 0.44 -3.5 1,085,049 - MPMX20_01030 0.44 -1.7 1,085,049 - MPMX20_01030 0.44 +1.4 1,085,049 - MPMX20_01030 0.44 -2.3 1,085,049 - MPMX20_01030 0.44 +0.9 1,085,049 - MPMX20_01030 0.44 -0.7 1,085,049 - MPMX20_01030 0.44 -0.3 1,085,049 - MPMX20_01030 0.44 -0.6 1,085,077 - MPMX20_01030 0.45 -0.6 1,085,079 + MPMX20_01030 0.45 -0.1 1,085,466 + MPMX20_01030 0.61 -1.3 1,085,483 + MPMX20_01030 0.62 -0.7 1,085,596 - MPMX20_01030 0.67 -0.5 1,085,598 - MPMX20_01030 0.67 +0.4 1,085,598 - MPMX20_01030 0.67 -1.5 1,085,809 + MPMX20_01030 0.76 -0.4 1,085,809 + MPMX20_01030 0.76 -1.7 1,085,903 - MPMX20_01030 0.80 -1.9 1,085,903 - MPMX20_01030 0.80 -0.7 1,086,163 - -0.7 1,086,213 + -1.7 1,086,291 + +0.9 1,086,291 + -1.3 1,086,393 - -0.6 1,086,393 - -0.8 1,086,405 + +1.2 1,086,405 + +0.9 1,086,464 + +0.2 1,086,464 - +0.1 1,086,469 + -0.1 1,086,469 + +0.3 1,086,487 - +0.8 1,086,495 + -0.5 1,086,502 + +1.2 1,086,502 + -0.3 1,086,502 + +0.3 1,086,502 + -0.4 1,086,515 - +0.6 1,086,576 + -0.9 1,086,599 - +1.1 1,086,718 - MPMX20_01031 0.47 +1.0 1,086,726 - MPMX20_01031 0.50 +2.2 1,086,742 + MPMX20_01031 0.56 +0.1 1,086,891 + +0.1 1,086,891 + +1.2 1,086,891 + +0.1 1,086,899 - +0.5 1,086,899 - +0.4 1,086,933 + +1.2 1,086,936 - -0.3 1,086,936 - +0.5 1,086,936 - +1.2 1,086,941 - -1.3 1,086,941 - +0.4 1,086,941 - +0.3 1,087,001 - +0.0 1,087,046 - +0.1 1,087,046 - -2.1 1,087,084 + -1.5 1,087,084 - -0.2 1,087,095 + -0.7 1,087,095 + +0.0 1,087,105 + -0.7 1,087,165 + +0.6 1,087,233 - +0.9 1,087,259 + -0.4 1,087,267 - MPMX20_01032 0.10 -1.4 1,087,281 - MPMX20_01032 0.11 +0.4
Or see this region's nucleotide sequence