Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01030

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01029 and MPMX20_01030 are separated by 183 nucleotidesMPMX20_01030 and MPMX20_01031 are separated by 210 nucleotidesMPMX20_01031 and MPMX20_01032 are separated by 212 nucleotides MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840 _01029 MPMX20_01030: MPMX20_01030 - Lon protease, at 1,084,024 to 1,086,378 _01030 MPMX20_01031: MPMX20_01031 - DNA-binding protein HU-beta, at 1,086,589 to 1,086,861 _01031 MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945 _01032 Position (kb) 1084 1085 1086 1087Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1083.284 kb on - strand, within MPMX20_01029at 1083.393 kb on - strand, within MPMX20_01029at 1083.434 kb on - strand, within MPMX20_01029at 1083.531 kb on + strand, within MPMX20_01029at 1083.539 kb on - strand, within MPMX20_01029at 1083.573 kb on + strand, within MPMX20_01029at 1083.713 kb on - strandat 1083.783 kb on + strandat 1083.940 kb on - strandat 1084.028 kb on + strandat 1084.078 kb on + strandat 1084.091 kb on - strandat 1084.107 kb on - strandat 1084.107 kb on - strandat 1084.291 kb on - strand, within MPMX20_01030at 1084.442 kb on - strand, within MPMX20_01030at 1084.472 kb on - strand, within MPMX20_01030at 1084.489 kb on + strand, within MPMX20_01030at 1084.504 kb on - strand, within MPMX20_01030at 1084.537 kb on - strand, within MPMX20_01030at 1084.641 kb on + strand, within MPMX20_01030at 1084.760 kb on - strand, within MPMX20_01030at 1084.876 kb on - strand, within MPMX20_01030at 1084.917 kb on + strand, within MPMX20_01030at 1085.026 kb on + strand, within MPMX20_01030at 1085.034 kb on - strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.041 kb on + strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.049 kb on - strand, within MPMX20_01030at 1085.077 kb on - strand, within MPMX20_01030at 1085.079 kb on + strand, within MPMX20_01030at 1085.466 kb on + strand, within MPMX20_01030at 1085.483 kb on + strand, within MPMX20_01030at 1085.596 kb on - strand, within MPMX20_01030at 1085.598 kb on - strand, within MPMX20_01030at 1085.598 kb on - strand, within MPMX20_01030at 1085.809 kb on + strand, within MPMX20_01030at 1085.809 kb on + strand, within MPMX20_01030at 1085.903 kb on - strand, within MPMX20_01030at 1085.903 kb on - strand, within MPMX20_01030at 1086.163 kb on - strandat 1086.213 kb on + strandat 1086.291 kb on + strandat 1086.291 kb on + strandat 1086.393 kb on - strandat 1086.393 kb on - strandat 1086.405 kb on + strandat 1086.405 kb on + strandat 1086.464 kb on + strandat 1086.464 kb on - strandat 1086.469 kb on + strandat 1086.469 kb on + strandat 1086.487 kb on - strandat 1086.495 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.515 kb on - strandat 1086.576 kb on + strandat 1086.599 kb on - strandat 1086.718 kb on - strand, within MPMX20_01031at 1086.726 kb on - strand, within MPMX20_01031at 1086.742 kb on + strand, within MPMX20_01031at 1086.891 kb on + strandat 1086.891 kb on + strandat 1086.891 kb on + strandat 1086.899 kb on - strandat 1086.899 kb on - strandat 1086.933 kb on + strandat 1086.936 kb on - strandat 1086.936 kb on - strandat 1086.936 kb on - strandat 1086.941 kb on - strandat 1086.941 kb on - strandat 1086.941 kb on - strandat 1087.001 kb on - strandat 1087.046 kb on - strandat 1087.046 kb on - strandat 1087.084 kb on + strandat 1087.084 kb on - strandat 1087.095 kb on + strandat 1087.095 kb on + strandat 1087.105 kb on + strandat 1087.165 kb on + strandat 1087.233 kb on - strandat 1087.259 kb on + strandat 1087.267 kb on - strand, within MPMX20_01032at 1087.281 kb on - strand, within MPMX20_01032

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,083,284 - MPMX20_01029 0.56 -2.6
1,083,393 - MPMX20_01029 0.65 -1.7
1,083,434 - MPMX20_01029 0.68 -0.1
1,083,531 + MPMX20_01029 0.76 -1.1
1,083,539 - MPMX20_01029 0.76 +0.3
1,083,573 + MPMX20_01029 0.79 -0.7
1,083,713 - -2.1
1,083,783 + -0.1
1,083,940 - -0.5
1,084,028 + -1.5
1,084,078 + -1.9
1,084,091 - -1.5
1,084,107 - -2.3
1,084,107 - -1.9
1,084,291 - MPMX20_01030 0.11 -2.1
1,084,442 - MPMX20_01030 0.18 -0.4
1,084,472 - MPMX20_01030 0.19 -2.0
1,084,489 + MPMX20_01030 0.20 -2.8
1,084,504 - MPMX20_01030 0.20 -3.0
1,084,537 - MPMX20_01030 0.22 -0.4
1,084,641 + MPMX20_01030 0.26 -1.6
1,084,760 - MPMX20_01030 0.31 +0.9
1,084,876 - MPMX20_01030 0.36 -0.6
1,084,917 + MPMX20_01030 0.38 +0.1
1,085,026 + MPMX20_01030 0.43 -2.8
1,085,034 - MPMX20_01030 0.43 -0.1
1,085,041 + MPMX20_01030 0.43 -0.9
1,085,041 + MPMX20_01030 0.43 -0.4
1,085,041 + MPMX20_01030 0.43 -1.0
1,085,041 + MPMX20_01030 0.43 -1.1
1,085,041 + MPMX20_01030 0.43 -1.3
1,085,041 + MPMX20_01030 0.43 -1.1
1,085,041 + MPMX20_01030 0.43 -1.9
1,085,041 + MPMX20_01030 0.43 +0.9
1,085,041 + MPMX20_01030 0.43 -3.6
1,085,041 + MPMX20_01030 0.43 +1.3
1,085,041 + MPMX20_01030 0.43 -0.7
1,085,041 + MPMX20_01030 0.43 +0.3
1,085,049 - MPMX20_01030 0.44 -3.5
1,085,049 - MPMX20_01030 0.44 -1.7
1,085,049 - MPMX20_01030 0.44 +1.4
1,085,049 - MPMX20_01030 0.44 -2.3
1,085,049 - MPMX20_01030 0.44 +0.9
1,085,049 - MPMX20_01030 0.44 -0.7
1,085,049 - MPMX20_01030 0.44 -0.3
1,085,049 - MPMX20_01030 0.44 -0.6
1,085,077 - MPMX20_01030 0.45 -0.6
1,085,079 + MPMX20_01030 0.45 -0.1
1,085,466 + MPMX20_01030 0.61 -1.3
1,085,483 + MPMX20_01030 0.62 -0.7
1,085,596 - MPMX20_01030 0.67 -0.5
1,085,598 - MPMX20_01030 0.67 +0.4
1,085,598 - MPMX20_01030 0.67 -1.5
1,085,809 + MPMX20_01030 0.76 -0.4
1,085,809 + MPMX20_01030 0.76 -1.7
1,085,903 - MPMX20_01030 0.80 -1.9
1,085,903 - MPMX20_01030 0.80 -0.7
1,086,163 - -0.7
1,086,213 + -1.7
1,086,291 + +0.9
1,086,291 + -1.3
1,086,393 - -0.6
1,086,393 - -0.8
1,086,405 + +1.2
1,086,405 + +0.9
1,086,464 + +0.2
1,086,464 - +0.1
1,086,469 + -0.1
1,086,469 + +0.3
1,086,487 - +0.8
1,086,495 + -0.5
1,086,502 + +1.2
1,086,502 + -0.3
1,086,502 + +0.3
1,086,502 + -0.4
1,086,515 - +0.6
1,086,576 + -0.9
1,086,599 - +1.1
1,086,718 - MPMX20_01031 0.47 +1.0
1,086,726 - MPMX20_01031 0.50 +2.2
1,086,742 + MPMX20_01031 0.56 +0.1
1,086,891 + +0.1
1,086,891 + +1.2
1,086,891 + +0.1
1,086,899 - +0.5
1,086,899 - +0.4
1,086,933 + +1.2
1,086,936 - -0.3
1,086,936 - +0.5
1,086,936 - +1.2
1,086,941 - -1.3
1,086,941 - +0.4
1,086,941 - +0.3
1,087,001 - +0.0
1,087,046 - +0.1
1,087,046 - -2.1
1,087,084 + -1.5
1,087,084 - -0.2
1,087,095 + -0.7
1,087,095 + +0.0
1,087,105 + -0.7
1,087,165 + +0.6
1,087,233 - +0.9
1,087,259 + -0.4
1,087,267 - MPMX20_01032 0.10 -1.4
1,087,281 - MPMX20_01032 0.11 +0.4

Or see this region's nucleotide sequence