Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01028

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01027 and MPMX20_01028 are separated by 260 nucleotidesMPMX20_01028 and MPMX20_01029 are separated by 126 nucleotides MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555 _01027 MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439 _01028 MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840 _01029 Position (kb) 1081 1082 1083Strain fitness (log2 ratio) -2 -1 0 1 2at 1080.824 kb on + strand, within MPMX20_01027at 1080.824 kb on + strand, within MPMX20_01027at 1080.945 kb on - strand, within MPMX20_01027at 1080.972 kb on + strand, within MPMX20_01027at 1081.064 kb on - strand, within MPMX20_01027at 1081.083 kb on - strand, within MPMX20_01027at 1081.090 kb on + strand, within MPMX20_01027at 1081.100 kb on + strand, within MPMX20_01027at 1081.108 kb on - strand, within MPMX20_01027at 1081.398 kb on + strand, within MPMX20_01027at 1081.463 kb on - strandat 1081.487 kb on + strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.709 kb on - strandat 1081.713 kb on + strandat 1081.713 kb on + strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.767 kb on + strandat 1081.775 kb on - strandat 1081.826 kb on - strandat 1081.834 kb on + strandat 1081.866 kb on - strandat 1081.884 kb on + strand, within MPMX20_01028at 1081.892 kb on - strand, within MPMX20_01028at 1081.976 kb on - strand, within MPMX20_01028at 1082.108 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.237 kb on - strand, within MPMX20_01028at 1082.344 kb on - strand, within MPMX20_01028at 1082.530 kb on - strandat 1082.535 kb on + strandat 1082.573 kb on - strandat 1082.607 kb on - strandat 1082.665 kb on + strandat 1082.665 kb on + strandat 1082.726 kb on - strand, within MPMX20_01029at 1082.839 kb on + strand, within MPMX20_01029at 1082.847 kb on - strand, within MPMX20_01029at 1082.847 kb on - strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.893 kb on - strand, within MPMX20_01029at 1082.999 kb on + strand, within MPMX20_01029at 1083.017 kb on - strand, within MPMX20_01029at 1083.284 kb on - strand, within MPMX20_01029at 1083.393 kb on - strand, within MPMX20_01029at 1083.434 kb on - strand, within MPMX20_01029

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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1,080,824 + MPMX20_01027 0.44 +0.2
1,080,824 + MPMX20_01027 0.44 +0.9
1,080,945 - MPMX20_01027 0.53 +0.7
1,080,972 + MPMX20_01027 0.55 -0.3
1,081,064 - MPMX20_01027 0.62 -0.6
1,081,083 - MPMX20_01027 0.64 +1.3
1,081,090 + MPMX20_01027 0.64 -1.2
1,081,100 + MPMX20_01027 0.65 -0.1
1,081,108 - MPMX20_01027 0.66 -0.5
1,081,398 + MPMX20_01027 0.88 -0.2
1,081,463 - +0.7
1,081,487 + +1.0
1,081,634 - +0.3
1,081,634 - +0.9
1,081,634 - +0.4
1,081,634 - -0.9
1,081,634 - -2.6
1,081,709 - +0.9
1,081,713 + +0.4
1,081,713 + -0.1
1,081,721 - -1.1
1,081,721 - -1.1
1,081,721 - +1.6
1,081,721 - +0.3
1,081,721 - +0.9
1,081,767 + -1.6
1,081,775 - +0.2
1,081,826 - -0.7
1,081,834 + +0.9
1,081,866 - -0.1
1,081,884 + MPMX20_01028 0.11 -0.6
1,081,892 - MPMX20_01028 0.12 -0.1
1,081,976 - MPMX20_01028 0.26 -0.7
1,082,108 + MPMX20_01028 0.47 -0.1
1,082,175 + MPMX20_01028 0.58 -1.7
1,082,175 + MPMX20_01028 0.58 -1.7
1,082,175 + MPMX20_01028 0.58 -0.7
1,082,175 + MPMX20_01028 0.58 -0.7
1,082,237 - MPMX20_01028 0.67 -0.7
1,082,344 - MPMX20_01028 0.85 +0.9
1,082,530 - +0.4
1,082,535 + +0.0
1,082,573 - -0.1
1,082,607 - -1.7
1,082,665 + +2.4
1,082,665 + +0.1
1,082,726 - MPMX20_01029 0.13 +0.1
1,082,839 + MPMX20_01029 0.21 -0.7
1,082,847 - MPMX20_01029 0.22 -0.1
1,082,847 - MPMX20_01029 0.22 +0.9
1,082,885 + MPMX20_01029 0.25 -0.5
1,082,885 + MPMX20_01029 0.25 +0.3
1,082,885 + MPMX20_01029 0.25 -0.7
1,082,885 + MPMX20_01029 0.25 -1.1
1,082,885 + MPMX20_01029 0.25 -1.9
1,082,885 + MPMX20_01029 0.25 -1.1
1,082,893 - MPMX20_01029 0.26 +0.0
1,082,999 + MPMX20_01029 0.34 +1.6
1,083,017 - MPMX20_01029 0.35 -0.4
1,083,284 - MPMX20_01029 0.56 -2.6
1,083,393 - MPMX20_01029 0.65 -1.7
1,083,434 - MPMX20_01029 0.68 -0.1

Or see this region's nucleotide sequence