Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01027 and MPMX20_01028 are separated by 260 nucleotides MPMX20_01028 and MPMX20_01029 are separated by 126 nucleotides
MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555
_01027
MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439
_01028
MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840
_01029
Position (kb)
1081
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.945 kb on - strand, within MPMX20_01027 at 1080.972 kb on + strand, within MPMX20_01027 at 1081.064 kb on - strand, within MPMX20_01027 at 1081.083 kb on - strand, within MPMX20_01027 at 1081.090 kb on + strand, within MPMX20_01027 at 1081.100 kb on + strand, within MPMX20_01027 at 1081.108 kb on - strand, within MPMX20_01027 at 1081.398 kb on + strand, within MPMX20_01027 at 1081.463 kb on - strand at 1081.487 kb on + strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.709 kb on - strand at 1081.713 kb on + strand at 1081.713 kb on + strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.767 kb on + strand at 1081.775 kb on - strand at 1081.826 kb on - strand at 1081.834 kb on + strand at 1081.866 kb on - strand at 1081.884 kb on + strand, within MPMX20_01028 at 1081.892 kb on - strand, within MPMX20_01028 at 1081.976 kb on - strand, within MPMX20_01028 at 1082.108 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.237 kb on - strand, within MPMX20_01028 at 1082.344 kb on - strand, within MPMX20_01028 at 1082.530 kb on - strand at 1082.535 kb on + strand at 1082.573 kb on - strand at 1082.607 kb on - strand at 1082.665 kb on + strand at 1082.665 kb on + strand at 1082.726 kb on - strand, within MPMX20_01029 at 1082.839 kb on + strand, within MPMX20_01029 at 1082.847 kb on - strand, within MPMX20_01029 at 1082.847 kb on - strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.885 kb on + strand, within MPMX20_01029 at 1082.893 kb on - strand, within MPMX20_01029 at 1082.999 kb on + strand, within MPMX20_01029 at 1083.017 kb on - strand, within MPMX20_01029 at 1083.284 kb on - strand, within MPMX20_01029 at 1083.393 kb on - strand, within MPMX20_01029 at 1083.434 kb on - strand, within MPMX20_01029
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 1,080,824 + MPMX20_01027 0.44 +0.2 1,080,824 + MPMX20_01027 0.44 +0.9 1,080,945 - MPMX20_01027 0.53 +0.7 1,080,972 + MPMX20_01027 0.55 -0.3 1,081,064 - MPMX20_01027 0.62 -0.6 1,081,083 - MPMX20_01027 0.64 +1.3 1,081,090 + MPMX20_01027 0.64 -1.2 1,081,100 + MPMX20_01027 0.65 -0.1 1,081,108 - MPMX20_01027 0.66 -0.5 1,081,398 + MPMX20_01027 0.88 -0.2 1,081,463 - +0.7 1,081,487 + +1.0 1,081,634 - +0.3 1,081,634 - +0.9 1,081,634 - +0.4 1,081,634 - -0.9 1,081,634 - -2.6 1,081,709 - +0.9 1,081,713 + +0.4 1,081,713 + -0.1 1,081,721 - -1.1 1,081,721 - -1.1 1,081,721 - +1.6 1,081,721 - +0.3 1,081,721 - +0.9 1,081,767 + -1.6 1,081,775 - +0.2 1,081,826 - -0.7 1,081,834 + +0.9 1,081,866 - -0.1 1,081,884 + MPMX20_01028 0.11 -0.6 1,081,892 - MPMX20_01028 0.12 -0.1 1,081,976 - MPMX20_01028 0.26 -0.7 1,082,108 + MPMX20_01028 0.47 -0.1 1,082,175 + MPMX20_01028 0.58 -1.7 1,082,175 + MPMX20_01028 0.58 -1.7 1,082,175 + MPMX20_01028 0.58 -0.7 1,082,175 + MPMX20_01028 0.58 -0.7 1,082,237 - MPMX20_01028 0.67 -0.7 1,082,344 - MPMX20_01028 0.85 +0.9 1,082,530 - +0.4 1,082,535 + +0.0 1,082,573 - -0.1 1,082,607 - -1.7 1,082,665 + +2.4 1,082,665 + +0.1 1,082,726 - MPMX20_01029 0.13 +0.1 1,082,839 + MPMX20_01029 0.21 -0.7 1,082,847 - MPMX20_01029 0.22 -0.1 1,082,847 - MPMX20_01029 0.22 +0.9 1,082,885 + MPMX20_01029 0.25 -0.5 1,082,885 + MPMX20_01029 0.25 +0.3 1,082,885 + MPMX20_01029 0.25 -0.7 1,082,885 + MPMX20_01029 0.25 -1.1 1,082,885 + MPMX20_01029 0.25 -1.9 1,082,885 + MPMX20_01029 0.25 -1.1 1,082,893 - MPMX20_01029 0.26 +0.0 1,082,999 + MPMX20_01029 0.34 +1.6 1,083,017 - MPMX20_01029 0.35 -0.4 1,083,284 - MPMX20_01029 0.56 -2.6 1,083,393 - MPMX20_01029 0.65 -1.7 1,083,434 - MPMX20_01029 0.68 -0.1
Or see this region's nucleotide sequence