Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00771 and MPMX20_00772 are separated by 1 nucleotides MPMX20_00772 and MPMX20_00773 are separated by 179 nucleotides MPMX20_00773 and MPMX20_00774 are separated by 562 nucleotides
MPMX20_00771: MPMX20_00771 - Acetolactate synthase isozyme 3 large subunit, at 804,704 to 806,428
_00771
MPMX20_00772: MPMX20_00772 - Acetolactate synthase isozyme 3 small subunit, at 806,430 to 806,921
_00772
MPMX20_00773: MPMX20_00773 - Catabolite repressor/activator, at 807,101 to 808,108
_00773
MPMX20_00774: MPMX20_00774 - Transcriptional regulator MraZ, at 808,671 to 809,165
_00774
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.109 kb on - strand, within MPMX20_00771 at 806.164 kb on + strand, within MPMX20_00771 at 806.164 kb on + strand, within MPMX20_00771 at 806.164 kb on + strand, within MPMX20_00771 at 806.167 kb on - strand, within MPMX20_00771 at 806.172 kb on - strand, within MPMX20_00771 at 806.172 kb on - strand, within MPMX20_00771 at 806.188 kb on + strand, within MPMX20_00771 at 806.224 kb on + strand, within MPMX20_00771 at 806.233 kb on - strand, within MPMX20_00771 at 806.233 kb on - strand, within MPMX20_00771 at 806.243 kb on + strand, within MPMX20_00771 at 806.280 kb on - strand at 806.280 kb on - strand at 806.344 kb on - strand at 806.357 kb on - strand at 806.359 kb on + strand at 806.359 kb on + strand at 806.359 kb on + strand at 806.359 kb on + strand at 806.367 kb on - strand at 806.421 kb on + strand at 806.422 kb on + strand at 806.425 kb on - strand at 806.432 kb on - strand at 806.478 kb on - strand at 806.538 kb on - strand, within MPMX20_00772 at 806.562 kb on + strand, within MPMX20_00772 at 806.667 kb on + strand, within MPMX20_00772 at 806.735 kb on - strand, within MPMX20_00772 at 806.743 kb on + strand, within MPMX20_00772 at 806.753 kb on - strand, within MPMX20_00772 at 806.762 kb on + strand, within MPMX20_00772 at 806.762 kb on + strand, within MPMX20_00772 at 806.770 kb on - strand, within MPMX20_00772 at 806.770 kb on - strand, within MPMX20_00772 at 806.799 kb on - strand, within MPMX20_00772 at 806.831 kb on + strand, within MPMX20_00772 at 806.902 kb on - strand at 806.917 kb on - strand at 806.937 kb on + strand at 806.954 kb on + strand at 806.959 kb on - strand at 806.985 kb on + strand at 806.985 kb on + strand at 806.993 kb on - strand at 806.993 kb on - strand at 807.022 kb on + strand at 807.045 kb on - strand at 807.068 kb on - strand at 807.075 kb on - strand at 807.077 kb on - strand at 807.166 kb on + strand at 807.178 kb on + strand at 807.184 kb on - strand at 807.280 kb on + strand, within MPMX20_00773 at 807.306 kb on - strand, within MPMX20_00773 at 807.353 kb on + strand, within MPMX20_00773 at 807.426 kb on + strand, within MPMX20_00773 at 807.434 kb on - strand, within MPMX20_00773 at 807.434 kb on - strand, within MPMX20_00773 at 807.434 kb on - strand, within MPMX20_00773 at 807.434 kb on - strand, within MPMX20_00773 at 807.549 kb on - strand, within MPMX20_00773 at 807.555 kb on + strand, within MPMX20_00773 at 807.619 kb on + strand, within MPMX20_00773 at 807.619 kb on + strand, within MPMX20_00773 at 807.619 kb on + strand, within MPMX20_00773 at 807.619 kb on + strand, within MPMX20_00773 at 807.659 kb on - strand, within MPMX20_00773 at 807.659 kb on - strand, within MPMX20_00773 at 807.671 kb on - strand, within MPMX20_00773 at 807.700 kb on + strand, within MPMX20_00773 at 807.708 kb on - strand, within MPMX20_00773 at 807.708 kb on - strand, within MPMX20_00773 at 807.734 kb on + strand, within MPMX20_00773 at 807.736 kb on + strand, within MPMX20_00773 at 807.742 kb on + strand, within MPMX20_00773 at 807.742 kb on - strand, within MPMX20_00773 at 807.744 kb on - strand, within MPMX20_00773 at 807.764 kb on + strand, within MPMX20_00773 at 807.804 kb on - strand, within MPMX20_00773 at 807.820 kb on + strand, within MPMX20_00773 at 807.837 kb on + strand, within MPMX20_00773 at 807.847 kb on + strand, within MPMX20_00773 at 807.890 kb on - strand, within MPMX20_00773 at 807.914 kb on + strand, within MPMX20_00773 at 807.956 kb on + strand, within MPMX20_00773 at 807.961 kb on + strand, within MPMX20_00773 at 807.964 kb on - strand, within MPMX20_00773 at 807.964 kb on - strand, within MPMX20_00773 at 807.964 kb on - strand, within MPMX20_00773 at 807.967 kb on + strand, within MPMX20_00773 at 807.967 kb on + strand, within MPMX20_00773 at 807.967 kb on + strand, within MPMX20_00773 at 807.968 kb on + strand, within MPMX20_00773 at 807.968 kb on + strand, within MPMX20_00773 at 807.976 kb on + strand, within MPMX20_00773 at 807.977 kb on - strand, within MPMX20_00773 at 807.978 kb on + strand, within MPMX20_00773 at 807.986 kb on - strand, within MPMX20_00773 at 807.988 kb on + strand, within MPMX20_00773 at 807.988 kb on + strand, within MPMX20_00773 at 807.988 kb on + strand, within MPMX20_00773 at 807.988 kb on + strand, within MPMX20_00773 at 807.988 kb on + strand, within MPMX20_00773 at 808.019 kb on + strand at 808.019 kb on + strand at 808.019 kb on + strand at 808.019 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.020 kb on + strand at 808.027 kb on - strand at 808.028 kb on - strand at 808.038 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.049 kb on + strand at 808.057 kb on - strand at 808.060 kb on + strand at 808.066 kb on + strand at 808.116 kb on + strand at 808.118 kb on + strand at 808.121 kb on + strand at 808.138 kb on - strand at 808.231 kb on + strand at 808.239 kb on - strand at 808.250 kb on - strand at 808.251 kb on - strand at 808.261 kb on - strand at 808.308 kb on - strand at 808.308 kb on - strand at 808.318 kb on - strand at 808.327 kb on - strand at 808.340 kb on - strand at 808.340 kb on - strand at 808.340 kb on - strand at 808.342 kb on + strand at 808.342 kb on + strand at 808.342 kb on + strand at 808.342 kb on + strand at 808.342 kb on + strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.350 kb on - strand at 808.361 kb on - strand at 808.377 kb on + strand at 808.377 kb on + strand at 808.377 kb on + strand at 808.377 kb on + strand at 808.377 kb on + strand at 808.377 kb on + strand at 808.382 kb on + strand at 808.382 kb on + strand at 808.382 kb on + strand at 808.383 kb on + strand at 808.383 kb on + strand at 808.384 kb on + strand at 808.385 kb on - strand at 808.385 kb on - strand at 808.385 kb on - strand at 808.385 kb on - strand at 808.385 kb on - strand at 808.385 kb on - strand at 808.386 kb on - strand at 808.388 kb on + strand at 808.391 kb on - strand at 808.397 kb on + strand at 808.397 kb on + strand at 808.397 kb on - strand at 808.397 kb on - strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.399 kb on + strand at 808.404 kb on + strand at 808.404 kb on - strand at 808.405 kb on - strand at 808.406 kb on + strand at 808.407 kb on - strand at 808.407 kb on - strand at 808.407 kb on - strand at 808.407 kb on - strand at 808.407 kb on - strand at 808.424 kb on + strand at 808.442 kb on + strand at 808.450 kb on + strand at 808.454 kb on + strand at 808.469 kb on + strand at 808.477 kb on - strand at 808.477 kb on - strand at 808.477 kb on - strand at 808.479 kb on - strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.481 kb on + strand at 808.489 kb on - strand at 808.489 kb on - strand at 808.489 kb on - strand at 808.490 kb on - strand at 808.492 kb on + strand at 808.495 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.550 kb on + strand at 808.558 kb on + strand at 808.558 kb on - strand at 808.564 kb on + strand at 808.564 kb on + strand at 808.566 kb on - strand at 808.572 kb on + strand at 808.572 kb on + strand at 808.572 kb on + strand at 808.572 kb on - strand at 808.572 kb on - strand at 808.572 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.580 kb on - strand at 808.582 kb on - strand at 808.582 kb on - strand at 808.582 kb on - strand at 808.589 kb on - strand at 808.595 kb on + strand at 808.596 kb on - strand at 808.597 kb on + strand at 808.602 kb on + strand at 808.602 kb on + strand at 808.604 kb on - strand at 808.605 kb on - strand at 808.605 kb on - strand at 808.605 kb on - strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.607 kb on + strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.610 kb on - strand at 808.614 kb on - strand at 808.614 kb on - strand at 808.614 kb on - strand at 808.615 kb on - strand at 808.615 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.616 kb on - strand at 808.617 kb on + strand at 808.617 kb on + strand at 808.617 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.618 kb on + strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.625 kb on - strand at 808.625 kb on - strand at 808.625 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.626 kb on - strand at 808.631 kb on - strand at 808.683 kb on + strand at 808.685 kb on + strand at 808.690 kb on + strand at 808.694 kb on + strand at 808.695 kb on + strand at 808.704 kb on + strand at 808.704 kb on + strand at 808.704 kb on + strand at 808.712 kb on + strand at 808.717 kb on + strand at 808.717 kb on + strand at 808.764 kb on + strand, within MPMX20_00774 at 808.764 kb on + strand, within MPMX20_00774 at 808.831 kb on + strand, within MPMX20_00774 at 808.839 kb on + strand, within MPMX20_00774 at 808.844 kb on + strand, within MPMX20_00774 at 808.844 kb on + strand, within MPMX20_00774 at 808.844 kb on + strand, within MPMX20_00774 at 808.844 kb on + strand, within MPMX20_00774 at 808.844 kb on + strand, within MPMX20_00774 at 808.969 kb on + strand, within MPMX20_00774 at 808.989 kb on + strand, within MPMX20_00774 at 809.013 kb on + strand, within MPMX20_00774 at 809.045 kb on + strand, within MPMX20_00774 at 809.053 kb on + strand, within MPMX20_00774 at 809.053 kb on + strand, within MPMX20_00774 at 809.061 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.080 kb on + strand, within MPMX20_00774 at 809.090 kb on + strand, within MPMX20_00774 at 809.090 kb on + strand, within MPMX20_00774 at 809.107 kb on + strand, within MPMX20_00774 at 809.107 kb on + strand, within MPMX20_00774
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 806,109 - MPMX20_00771 0.81 -0.2 806,164 + MPMX20_00771 0.85 +0.7 806,164 + MPMX20_00771 0.85 +0.2 806,164 + MPMX20_00771 0.85 +0.2 806,167 - MPMX20_00771 0.85 -1.1 806,172 - MPMX20_00771 0.85 +0.6 806,172 - MPMX20_00771 0.85 -0.4 806,188 + MPMX20_00771 0.86 +0.2 806,224 + MPMX20_00771 0.88 +0.5 806,233 - MPMX20_00771 0.89 +0.5 806,233 - MPMX20_00771 0.89 -0.1 806,243 + MPMX20_00771 0.89 +0.2 806,280 - -0.3 806,280 - +0.7 806,344 - -0.8 806,357 - -0.6 806,359 + +0.9 806,359 + +0.5 806,359 + +0.7 806,359 + +0.3 806,367 - -0.8 806,421 + +0.0 806,422 + +0.2 806,425 - -3.7 806,432 - -1.1 806,478 - -2.5 806,538 - MPMX20_00772 0.22 -1.3 806,562 + MPMX20_00772 0.27 +0.6 806,667 + MPMX20_00772 0.48 -0.2 806,735 - MPMX20_00772 0.62 +0.3 806,743 + MPMX20_00772 0.64 +0.7 806,753 - MPMX20_00772 0.66 -0.1 806,762 + MPMX20_00772 0.67 +0.7 806,762 + MPMX20_00772 0.67 +0.4 806,770 - MPMX20_00772 0.69 +0.1 806,770 - MPMX20_00772 0.69 +0.4 806,799 - MPMX20_00772 0.75 +0.7 806,831 + MPMX20_00772 0.82 +0.6 806,902 - -1.4 806,917 - -0.1 806,937 + -0.9 806,954 + +0.0 806,959 - -1.1 806,985 + +0.6 806,985 + -0.7 806,993 - -1.4 806,993 - -0.4 807,022 + -0.2 807,045 - -0.5 807,068 - -1.0 807,075 - +0.1 807,077 - -1.0 807,166 + -0.6 807,178 + -0.6 807,184 - -2.1 807,280 + MPMX20_00773 0.18 -1.4 807,306 - MPMX20_00773 0.20 -1.7 807,353 + MPMX20_00773 0.25 +1.6 807,426 + MPMX20_00773 0.32 -2.8 807,434 - MPMX20_00773 0.33 -0.8 807,434 - MPMX20_00773 0.33 -1.9 807,434 - MPMX20_00773 0.33 -1.1 807,434 - MPMX20_00773 0.33 -1.1 807,549 - MPMX20_00773 0.44 -0.9 807,555 + MPMX20_00773 0.45 -1.0 807,619 + MPMX20_00773 0.51 -0.3 807,619 + MPMX20_00773 0.51 -0.8 807,619 + MPMX20_00773 0.51 -0.7 807,619 + MPMX20_00773 0.51 -0.5 807,659 - MPMX20_00773 0.55 -1.3 807,659 - MPMX20_00773 0.55 -1.7 807,671 - MPMX20_00773 0.57 -0.1 807,700 + MPMX20_00773 0.59 -1.2 807,708 - MPMX20_00773 0.60 -1.7 807,708 - MPMX20_00773 0.60 -3.1 807,734 + MPMX20_00773 0.63 -0.9 807,736 + MPMX20_00773 0.63 -1.8 807,742 + MPMX20_00773 0.64 -0.7 807,742 - MPMX20_00773 0.64 -2.3 807,744 - MPMX20_00773 0.64 -0.2 807,764 + MPMX20_00773 0.66 -1.1 807,804 - MPMX20_00773 0.70 -0.9 807,820 + MPMX20_00773 0.71 -1.4 807,837 + MPMX20_00773 0.73 -1.6 807,847 + MPMX20_00773 0.74 -1.7 807,890 - MPMX20_00773 0.78 +0.6 807,914 + MPMX20_00773 0.81 -0.9 807,956 + MPMX20_00773 0.85 -1.6 807,961 + MPMX20_00773 0.85 -1.7 807,964 - MPMX20_00773 0.86 -0.3 807,964 - MPMX20_00773 0.86 -0.6 807,964 - MPMX20_00773 0.86 -0.7 807,967 + MPMX20_00773 0.86 -2.8 807,967 + MPMX20_00773 0.86 -2.9 807,967 + MPMX20_00773 0.86 -0.8 807,968 + MPMX20_00773 0.86 -1.8 807,968 + MPMX20_00773 0.86 -0.1 807,976 + MPMX20_00773 0.87 -2.3 807,977 - MPMX20_00773 0.87 -1.0 807,978 + MPMX20_00773 0.87 -1.4 807,986 - MPMX20_00773 0.88 -1.9 807,988 + MPMX20_00773 0.88 -1.7 807,988 + MPMX20_00773 0.88 -1.0 807,988 + MPMX20_00773 0.88 -0.8 807,988 + MPMX20_00773 0.88 -2.1 807,988 + MPMX20_00773 0.88 -0.6 808,019 + +0.3 808,019 + -1.7 808,019 + -0.5 808,019 + -1.1 808,020 + -1.5 808,020 + -1.4 808,020 + -0.2 808,020 + -0.1 808,020 + +0.4 808,020 + +0.8 808,020 + -0.1 808,020 + -1.0 808,020 + -2.2 808,020 + -0.5 808,020 + -2.0 808,020 + -1.1 808,027 - 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Or see this region's nucleotide sequence