Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00739 and MPMX20_00740 are separated by 18 nucleotides MPMX20_00740 and MPMX20_00741 are separated by 138 nucleotides MPMX20_00741 and MPMX20_00742 are separated by 105 nucleotides
MPMX20_00739: MPMX20_00739 - Carbamoyl-phosphate synthase small chain, at 763,145 to 764,293
_00739
MPMX20_00740: MPMX20_00740 - Carbamoyl-phosphate synthase large chain, at 764,312 to 767,536
_00740
MPMX20_00741: MPMX20_00741 - putative lipoprotein YgdR, at 767,675 to 767,908
_00741
MPMX20_00742: MPMX20_00742 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 768,014 to 768,544
_00742
Position (kb) 764
765
766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 763.331 kb on + strand, within MPMX20_00739 at 763.435 kb on + strand, within MPMX20_00739 at 763.443 kb on - strand, within MPMX20_00739 at 763.456 kb on + strand, within MPMX20_00739 at 763.488 kb on + strand, within MPMX20_00739 at 763.539 kb on - strand, within MPMX20_00739 at 763.555 kb on - strand, within MPMX20_00739 at 763.598 kb on + strand, within MPMX20_00739 at 763.608 kb on + strand, within MPMX20_00739 at 763.616 kb on - strand, within MPMX20_00739 at 763.650 kb on + strand, within MPMX20_00739 at 763.653 kb on + strand, within MPMX20_00739 at 763.856 kb on - strand, within MPMX20_00739 at 763.875 kb on + strand, within MPMX20_00739 at 763.985 kb on + strand, within MPMX20_00739 at 763.990 kb on - strand, within MPMX20_00739 at 764.069 kb on + strand, within MPMX20_00739 at 764.077 kb on - strand, within MPMX20_00739 at 764.153 kb on + strand, within MPMX20_00739 at 764.173 kb on + strand, within MPMX20_00739 at 764.283 kb on - strand at 764.410 kb on - strand at 764.444 kb on + strand at 764.452 kb on - strand at 764.452 kb on - strand at 764.452 kb on - strand at 764.454 kb on + strand at 764.454 kb on + strand at 764.462 kb on - strand at 764.567 kb on + strand at 764.594 kb on + strand at 764.602 kb on - strand at 764.631 kb on + strand at 764.695 kb on - strand, within MPMX20_00740 at 764.759 kb on - strand, within MPMX20_00740 at 764.863 kb on - strand, within MPMX20_00740 at 764.903 kb on - strand, within MPMX20_00740 at 764.910 kb on + strand, within MPMX20_00740 at 765.068 kb on + strand, within MPMX20_00740 at 765.260 kb on - strand, within MPMX20_00740 at 765.351 kb on + strand, within MPMX20_00740 at 765.369 kb on + strand, within MPMX20_00740 at 765.450 kb on - strand, within MPMX20_00740 at 765.474 kb on + strand, within MPMX20_00740 at 765.513 kb on + strand, within MPMX20_00740 at 765.521 kb on - strand, within MPMX20_00740 at 765.560 kb on - strand, within MPMX20_00740 at 765.659 kb on - strand, within MPMX20_00740 at 765.867 kb on + strand, within MPMX20_00740 at 765.875 kb on - strand, within MPMX20_00740 at 765.937 kb on + strand, within MPMX20_00740 at 765.937 kb on + strand, within MPMX20_00740 at 765.945 kb on - strand, within MPMX20_00740 at 766.014 kb on + strand, within MPMX20_00740 at 766.023 kb on + strand, within MPMX20_00740 at 766.028 kb on + strand, within MPMX20_00740 at 766.066 kb on - strand, within MPMX20_00740 at 766.068 kb on + strand, within MPMX20_00740 at 766.068 kb on + strand, within MPMX20_00740 at 766.076 kb on - strand, within MPMX20_00740 at 766.076 kb on - strand, within MPMX20_00740 at 766.076 kb on - strand, within MPMX20_00740 at 766.076 kb on - strand, within MPMX20_00740 at 766.125 kb on - strand, within MPMX20_00740 at 766.169 kb on - strand, within MPMX20_00740 at 766.213 kb on + strand, within MPMX20_00740 at 766.213 kb on + strand, within MPMX20_00740 at 766.221 kb on - strand, within MPMX20_00740 at 766.249 kb on - strand, within MPMX20_00740 at 766.249 kb on - strand, within MPMX20_00740 at 766.313 kb on - strand, within MPMX20_00740 at 766.331 kb on - strand, within MPMX20_00740 at 766.331 kb on - strand, within MPMX20_00740 at 766.551 kb on - strand, within MPMX20_00740 at 766.661 kb on - strand, within MPMX20_00740 at 766.675 kb on - strand, within MPMX20_00740 at 766.684 kb on + strand, within MPMX20_00740 at 766.756 kb on - strand, within MPMX20_00740 at 766.786 kb on + strand, within MPMX20_00740 at 766.805 kb on + strand, within MPMX20_00740 at 766.840 kb on + strand, within MPMX20_00740 at 766.858 kb on - strand, within MPMX20_00740 at 767.115 kb on - strand, within MPMX20_00740 at 767.149 kb on + strand, within MPMX20_00740 at 767.201 kb on - strand, within MPMX20_00740 at 767.214 kb on + strand at 767.311 kb on + strand at 767.366 kb on - strand at 767.386 kb on + strand at 767.416 kb on + strand at 767.470 kb on + strand at 767.475 kb on + strand at 767.494 kb on + strand at 767.553 kb on + strand at 767.588 kb on - strand at 767.607 kb on + strand at 767.638 kb on - strand at 767.653 kb on + strand at 767.661 kb on - strand at 767.661 kb on - strand at 767.671 kb on - strand at 767.673 kb on - strand at 767.697 kb on + strand at 767.705 kb on - strand, within MPMX20_00741 at 767.723 kb on - strand, within MPMX20_00741 at 767.729 kb on - strand, within MPMX20_00741 at 767.806 kb on - strand, within MPMX20_00741 at 767.853 kb on + strand, within MPMX20_00741 at 767.858 kb on + strand, within MPMX20_00741 at 767.858 kb on + strand, within MPMX20_00741 at 767.861 kb on - strand, within MPMX20_00741 at 767.863 kb on + strand, within MPMX20_00741 at 767.863 kb on + strand, within MPMX20_00741 at 767.863 kb on + strand, within MPMX20_00741 at 767.868 kb on + strand, within MPMX20_00741 at 767.871 kb on - strand, within MPMX20_00741 at 767.876 kb on - strand, within MPMX20_00741 at 767.876 kb on - strand, within MPMX20_00741 at 767.876 kb on - strand, within MPMX20_00741 at 767.876 kb on - strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.878 kb on + strand, within MPMX20_00741 at 767.886 kb on - strand at 767.907 kb on + strand at 767.908 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.945 kb on + strand at 767.953 kb on - strand at 768.060 kb on + strand at 768.072 kb on + strand, within MPMX20_00742 at 768.082 kb on + strand, within MPMX20_00742 at 768.082 kb on + strand, within MPMX20_00742 at 768.082 kb on + strand, within MPMX20_00742 at 768.090 kb on - strand, within MPMX20_00742 at 768.167 kb on + strand, within MPMX20_00742 at 768.214 kb on + strand, within MPMX20_00742 at 768.214 kb on + strand, within MPMX20_00742 at 768.217 kb on + strand, within MPMX20_00742 at 768.222 kb on - strand, within MPMX20_00742 at 768.222 kb on - strand, within MPMX20_00742 at 768.222 kb on - strand, within MPMX20_00742 at 768.222 kb on - strand, within MPMX20_00742 at 768.227 kb on - strand, within MPMX20_00742 at 768.230 kb on - strand, within MPMX20_00742 at 768.313 kb on + strand, within MPMX20_00742 at 768.380 kb on - strand, within MPMX20_00742 at 768.380 kb on - strand, within MPMX20_00742 at 768.409 kb on + strand, within MPMX20_00742 at 768.414 kb on + strand, within MPMX20_00742 at 768.419 kb on + strand, within MPMX20_00742 at 768.422 kb on - strand, within MPMX20_00742 at 768.427 kb on - strand, within MPMX20_00742 at 768.451 kb on + strand, within MPMX20_00742
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 763,331 + MPMX20_00739 0.16 -1.8 763,435 + MPMX20_00739 0.25 +1.5 763,443 - MPMX20_00739 0.26 -2.1 763,456 + MPMX20_00739 0.27 -3.7 763,488 + MPMX20_00739 0.30 -1.7 763,539 - MPMX20_00739 0.34 -3.4 763,555 - MPMX20_00739 0.36 -3.1 763,598 + MPMX20_00739 0.39 +0.3 763,608 + MPMX20_00739 0.40 -0.5 763,616 - MPMX20_00739 0.41 -2.3 763,650 + MPMX20_00739 0.44 -1.1 763,653 + MPMX20_00739 0.44 -0.5 763,856 - MPMX20_00739 0.62 -0.9 763,875 + MPMX20_00739 0.64 -0.7 763,985 + MPMX20_00739 0.73 -0.6 763,990 - MPMX20_00739 0.74 -1.0 764,069 + MPMX20_00739 0.80 -2.1 764,077 - MPMX20_00739 0.81 -1.5 764,153 + MPMX20_00739 0.88 -2.3 764,173 + MPMX20_00739 0.89 -0.1 764,283 - -1.2 764,410 - -1.9 764,444 + -1.7 764,452 - -2.3 764,452 - +0.6 764,452 - +1.2 764,454 + -0.1 764,454 + -0.9 764,462 - -0.0 764,567 + -1.7 764,594 + -0.9 764,602 - -1.8 764,631 + -1.5 764,695 - MPMX20_00740 0.12 -0.9 764,759 - MPMX20_00740 0.14 -1.1 764,863 - MPMX20_00740 0.17 -2.1 764,903 - MPMX20_00740 0.18 -2.5 764,910 + MPMX20_00740 0.19 -1.1 765,068 + MPMX20_00740 0.23 -0.2 765,260 - MPMX20_00740 0.29 -0.5 765,351 + MPMX20_00740 0.32 -1.7 765,369 + MPMX20_00740 0.33 -1.0 765,450 - MPMX20_00740 0.35 -0.5 765,474 + MPMX20_00740 0.36 +0.9 765,513 + MPMX20_00740 0.37 +0.9 765,521 - MPMX20_00740 0.37 -2.9 765,560 - MPMX20_00740 0.39 -1.1 765,659 - MPMX20_00740 0.42 -1.9 765,867 + MPMX20_00740 0.48 -1.7 765,875 - MPMX20_00740 0.48 -1.8 765,937 + MPMX20_00740 0.50 -1.7 765,937 + MPMX20_00740 0.50 -1.1 765,945 - MPMX20_00740 0.51 -0.1 766,014 + MPMX20_00740 0.53 -0.1 766,023 + MPMX20_00740 0.53 -1.3 766,028 + MPMX20_00740 0.53 -0.5 766,066 - MPMX20_00740 0.54 -2.0 766,068 + MPMX20_00740 0.54 -1.8 766,068 + MPMX20_00740 0.54 -1.9 766,076 - MPMX20_00740 0.55 +0.9 766,076 - MPMX20_00740 0.55 -0.8 766,076 - MPMX20_00740 0.55 -1.7 766,076 - MPMX20_00740 0.55 -1.1 766,125 - MPMX20_00740 0.56 -1.3 766,169 - MPMX20_00740 0.58 -1.7 766,213 + MPMX20_00740 0.59 -1.7 766,213 + MPMX20_00740 0.59 -0.1 766,221 - MPMX20_00740 0.59 -0.6 766,249 - MPMX20_00740 0.60 -1.4 766,249 - MPMX20_00740 0.60 -1.1 766,313 - MPMX20_00740 0.62 -1.6 766,331 - MPMX20_00740 0.63 -1.9 766,331 - MPMX20_00740 0.63 -2.9 766,551 - MPMX20_00740 0.69 -0.5 766,661 - MPMX20_00740 0.73 -1.5 766,675 - MPMX20_00740 0.73 -1.1 766,684 + MPMX20_00740 0.74 -0.8 766,756 - MPMX20_00740 0.76 -2.6 766,786 + MPMX20_00740 0.77 -0.9 766,805 + MPMX20_00740 0.77 -1.7 766,840 + MPMX20_00740 0.78 -1.5 766,858 - MPMX20_00740 0.79 -2.2 767,115 - MPMX20_00740 0.87 -1.1 767,149 + MPMX20_00740 0.88 -0.4 767,201 - MPMX20_00740 0.90 -0.6 767,214 + +0.9 767,311 + -0.5 767,366 - -1.1 767,386 + -1.9 767,416 + -0.7 767,470 + -0.5 767,475 + +0.2 767,494 + -0.1 767,553 + +0.1 767,588 - -0.2 767,607 + +1.0 767,638 - +1.0 767,653 + +1.1 767,661 - -1.9 767,661 - -0.9 767,671 - +0.2 767,673 - +1.9 767,697 + -0.7 767,705 - MPMX20_00741 0.13 +0.5 767,723 - MPMX20_00741 0.21 -1.0 767,729 - MPMX20_00741 0.23 -0.8 767,806 - MPMX20_00741 0.56 -1.5 767,853 + MPMX20_00741 0.76 +0.2 767,858 + MPMX20_00741 0.78 -0.3 767,858 + MPMX20_00741 0.78 +2.9 767,861 - MPMX20_00741 0.79 -0.1 767,863 + MPMX20_00741 0.80 +0.7 767,863 + MPMX20_00741 0.80 -0.0 767,863 + MPMX20_00741 0.80 +0.1 767,868 + MPMX20_00741 0.82 +1.4 767,871 - MPMX20_00741 0.84 -0.2 767,876 - MPMX20_00741 0.86 +0.2 767,876 - MPMX20_00741 0.86 -0.5 767,876 - MPMX20_00741 0.86 +0.2 767,876 - MPMX20_00741 0.86 -0.4 767,878 + MPMX20_00741 0.87 -0.4 767,878 + MPMX20_00741 0.87 -0.0 767,878 + MPMX20_00741 0.87 -1.5 767,878 + MPMX20_00741 0.87 +1.1 767,878 + MPMX20_00741 0.87 -0.4 767,878 + MPMX20_00741 0.87 -0.0 767,878 + MPMX20_00741 0.87 +0.4 767,878 + MPMX20_00741 0.87 +0.5 767,878 + MPMX20_00741 0.87 -0.3 767,886 - -1.5 767,907 + +1.6 767,908 + +0.8 767,945 + -0.5 767,945 + +0.8 767,945 + +0.8 767,945 + -0.3 767,945 + +0.2 767,945 + +0.9 767,945 + -0.3 767,953 - -0.9 768,060 + -0.2 768,072 + MPMX20_00742 0.11 +0.6 768,082 + MPMX20_00742 0.13 -0.3 768,082 + MPMX20_00742 0.13 -0.6 768,082 + MPMX20_00742 0.13 +1.5 768,090 - MPMX20_00742 0.14 -0.1 768,167 + MPMX20_00742 0.29 -0.7 768,214 + MPMX20_00742 0.38 -0.3 768,214 + MPMX20_00742 0.38 +0.5 768,217 + MPMX20_00742 0.38 +0.1 768,222 - MPMX20_00742 0.39 +0.1 768,222 - MPMX20_00742 0.39 +0.1 768,222 - MPMX20_00742 0.39 +0.3 768,222 - MPMX20_00742 0.39 +0.3 768,227 - MPMX20_00742 0.40 -0.2 768,230 - MPMX20_00742 0.41 +0.2 768,313 + MPMX20_00742 0.56 -0.1 768,380 - MPMX20_00742 0.69 -0.0 768,380 - MPMX20_00742 0.69 +0.3 768,409 + MPMX20_00742 0.74 +0.4 768,414 + MPMX20_00742 0.75 +0.4 768,419 + MPMX20_00742 0.76 -0.1 768,422 - MPMX20_00742 0.77 +0.9 768,427 - MPMX20_00742 0.78 -0.6 768,451 + MPMX20_00742 0.82 +0.3
Or see this region's nucleotide sequence