Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00671 and MPMX20_00672 are separated by 19 nucleotides MPMX20_00672 and MPMX20_00673 are separated by 91 nucleotides MPMX20_00673 and MPMX20_00674 are separated by 303 nucleotides
MPMX20_00671: MPMX20_00671 - [Ribosomal protein S18]-alanine N-acetyltransferase, at 690,025 to 690,468
_00671
MPMX20_00672: MPMX20_00672 - Pyrimidine 5'-nucleotidase YjjG, at 690,488 to 691,165
_00672
MPMX20_00673: MPMX20_00673 - Peptide chain release factor RF3, at 691,257 to 692,846
_00673
MPMX20_00674: MPMX20_00674 - Osmotically-inducible protein Y, at 693,150 to 693,767
_00674
Position (kb) 691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 690.274 kb on - strand, within MPMX20_00671 at 690.334 kb on - strand, within MPMX20_00671 at 690.334 kb on - strand, within MPMX20_00671 at 690.334 kb on - strand, within MPMX20_00671 at 690.334 kb on - strand, within MPMX20_00671 at 690.334 kb on - strand, within MPMX20_00671 at 690.372 kb on - strand, within MPMX20_00671 at 690.382 kb on - strand, within MPMX20_00671 at 690.419 kb on + strand, within MPMX20_00671 at 690.419 kb on + strand, within MPMX20_00671 at 690.427 kb on - strand at 690.444 kb on + strand at 690.529 kb on + strand at 690.601 kb on + strand, within MPMX20_00672 at 690.609 kb on + strand, within MPMX20_00672 at 690.694 kb on + strand, within MPMX20_00672 at 690.702 kb on - strand, within MPMX20_00672 at 690.723 kb on - strand, within MPMX20_00672 at 690.753 kb on - strand, within MPMX20_00672 at 690.753 kb on - strand, within MPMX20_00672 at 690.851 kb on - strand, within MPMX20_00672 at 690.884 kb on - strand, within MPMX20_00672 at 690.915 kb on + strand, within MPMX20_00672 at 690.920 kb on - strand, within MPMX20_00672 at 690.920 kb on - strand, within MPMX20_00672 at 690.920 kb on - strand, within MPMX20_00672 at 690.923 kb on - strand, within MPMX20_00672 at 690.923 kb on - strand, within MPMX20_00672 at 691.025 kb on - strand, within MPMX20_00672 at 691.093 kb on + strand, within MPMX20_00672 at 691.101 kb on + strand at 691.111 kb on + strand at 691.145 kb on - strand at 691.145 kb on - strand at 691.155 kb on - strand at 691.232 kb on - strand at 691.232 kb on - strand at 691.232 kb on - strand at 691.267 kb on + strand at 691.273 kb on - strand at 691.275 kb on - strand at 691.398 kb on - strand at 691.446 kb on - strand, within MPMX20_00673 at 691.474 kb on + strand, within MPMX20_00673 at 691.487 kb on - strand, within MPMX20_00673 at 691.580 kb on - strand, within MPMX20_00673 at 691.624 kb on + strand, within MPMX20_00673 at 691.634 kb on + strand, within MPMX20_00673 at 691.726 kb on - strand, within MPMX20_00673 at 691.771 kb on - strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.790 kb on + strand, within MPMX20_00673 at 691.798 kb on - strand, within MPMX20_00673 at 691.798 kb on - strand, within MPMX20_00673 at 691.798 kb on - strand, within MPMX20_00673 at 691.842 kb on + strand, within MPMX20_00673 at 691.850 kb on - strand, within MPMX20_00673 at 691.865 kb on + strand, within MPMX20_00673 at 691.953 kb on - strand, within MPMX20_00673 at 691.955 kb on + strand, within MPMX20_00673 at 691.955 kb on + strand, within MPMX20_00673 at 691.986 kb on + strand, within MPMX20_00673 at 692.044 kb on - strand, within MPMX20_00673 at 692.070 kb on + strand, within MPMX20_00673 at 692.072 kb on + strand, within MPMX20_00673 at 692.113 kb on + strand, within MPMX20_00673 at 692.168 kb on + strand, within MPMX20_00673 at 692.245 kb on - strand, within MPMX20_00673 at 692.296 kb on + strand, within MPMX20_00673 at 692.296 kb on + strand, within MPMX20_00673 at 692.296 kb on + strand, within MPMX20_00673 at 692.304 kb on - strand, within MPMX20_00673 at 692.304 kb on - strand, within MPMX20_00673 at 692.304 kb on - strand, within MPMX20_00673 at 692.304 kb on - strand, within MPMX20_00673 at 692.329 kb on - strand, within MPMX20_00673 at 692.368 kb on + strand, within MPMX20_00673 at 692.389 kb on + strand, within MPMX20_00673 at 692.397 kb on - strand, within MPMX20_00673 at 692.397 kb on - strand, within MPMX20_00673 at 692.399 kb on + strand, within MPMX20_00673 at 692.463 kb on - strand, within MPMX20_00673 at 692.529 kb on + strand, within MPMX20_00673 at 692.529 kb on + strand, within MPMX20_00673 at 692.537 kb on - strand, within MPMX20_00673 at 692.547 kb on + strand, within MPMX20_00673 at 692.583 kb on + strand, within MPMX20_00673 at 692.591 kb on - strand, within MPMX20_00673 at 692.612 kb on + strand, within MPMX20_00673 at 692.657 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.674 kb on + strand, within MPMX20_00673 at 692.682 kb on - strand, within MPMX20_00673 at 692.682 kb on - strand, within MPMX20_00673 at 692.682 kb on - strand, within MPMX20_00673 at 692.778 kb on - strand at 692.779 kb on + strand at 692.783 kb on - strand at 692.783 kb on - strand at 692.785 kb on + strand at 692.785 kb on + strand at 692.785 kb on + strand at 692.785 kb on + strand at 692.785 kb on + strand at 692.786 kb on + strand at 692.817 kb on + strand at 692.817 kb on + strand at 692.825 kb on - strand at 692.825 kb on - strand at 692.835 kb on + strand at 692.835 kb on + strand at 692.843 kb on + strand at 692.849 kb on - strand at 692.852 kb on + strand at 692.852 kb on + strand at 692.852 kb on + strand at 692.853 kb on + strand at 692.860 kb on - strand at 692.896 kb on + strand at 692.985 kb on - strand at 692.992 kb on + strand at 693.004 kb on + strand at 693.004 kb on + strand at 693.004 kb on + strand at 693.004 kb on + strand at 693.006 kb on + strand at 693.006 kb on + strand at 693.006 kb on + strand at 693.012 kb on - strand at 693.012 kb on - strand at 693.014 kb on - strand at 693.014 kb on - strand at 693.014 kb on - strand at 693.014 kb on - strand at 693.014 kb on - strand at 693.035 kb on + strand at 693.035 kb on - strand at 693.047 kb on + strand at 693.055 kb on - strand at 693.055 kb on - strand at 693.122 kb on + strand at 693.127 kb on + strand at 693.129 kb on + strand at 693.130 kb on - strand at 693.130 kb on - strand at 693.130 kb on - strand at 693.130 kb on - strand at 693.135 kb on - strand at 693.137 kb on - strand at 693.139 kb on + strand at 693.147 kb on - strand at 693.162 kb on + strand at 693.190 kb on + strand at 693.190 kb on + strand at 693.190 kb on + strand at 693.195 kb on + strand at 693.198 kb on - strand at 693.198 kb on - strand at 693.213 kb on - strand, within MPMX20_00674 at 693.217 kb on - strand, within MPMX20_00674 at 693.220 kb on + strand, within MPMX20_00674 at 693.220 kb on + strand, within MPMX20_00674 at 693.220 kb on + strand, within MPMX20_00674 at 693.220 kb on + strand, within MPMX20_00674 at 693.223 kb on - strand, within MPMX20_00674 at 693.228 kb on - strand, within MPMX20_00674 at 693.228 kb on - strand, within MPMX20_00674 at 693.228 kb on - strand, within MPMX20_00674 at 693.228 kb on - strand, within MPMX20_00674 at 693.236 kb on + strand, within MPMX20_00674 at 693.236 kb on + strand, within MPMX20_00674 at 693.241 kb on + strand, within MPMX20_00674 at 693.244 kb on - strand, within MPMX20_00674 at 693.260 kb on + strand, within MPMX20_00674 at 693.268 kb on - strand, within MPMX20_00674 at 693.355 kb on - strand, within MPMX20_00674 at 693.355 kb on - strand, within MPMX20_00674 at 693.375 kb on + strand, within MPMX20_00674 at 693.383 kb on - strand, within MPMX20_00674 at 693.383 kb on - strand, within MPMX20_00674 at 693.444 kb on + strand, within MPMX20_00674 at 693.449 kb on + strand, within MPMX20_00674 at 693.452 kb on - strand, within MPMX20_00674 at 693.453 kb on - strand, within MPMX20_00674 at 693.457 kb on - strand, within MPMX20_00674 at 693.484 kb on + strand, within MPMX20_00674 at 693.484 kb on + strand, within MPMX20_00674 at 693.492 kb on + strand, within MPMX20_00674 at 693.492 kb on + strand, within MPMX20_00674 at 693.501 kb on - strand, within MPMX20_00674 at 693.530 kb on - strand, within MPMX20_00674 at 693.546 kb on + strand, within MPMX20_00674 at 693.554 kb on - strand, within MPMX20_00674 at 693.630 kb on + strand, within MPMX20_00674 at 693.767 kb on + strand at 693.767 kb on + strand at 693.775 kb on + strand at 693.775 kb on + strand at 693.789 kb on + strand at 693.797 kb on - strand at 693.798 kb on - strand at 693.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 690,274 - MPMX20_00671 0.56 -0.2 690,334 - MPMX20_00671 0.70 +0.6 690,334 - MPMX20_00671 0.70 -1.7 690,334 - MPMX20_00671 0.70 -2.6 690,334 - MPMX20_00671 0.70 -0.6 690,334 - MPMX20_00671 0.70 +0.5 690,372 - MPMX20_00671 0.78 +0.8 690,382 - MPMX20_00671 0.80 -0.7 690,419 + MPMX20_00671 0.89 +0.9 690,419 + MPMX20_00671 0.89 +0.6 690,427 - +0.9 690,444 + -0.5 690,529 + -0.1 690,601 + MPMX20_00672 0.17 +0.1 690,609 + MPMX20_00672 0.18 +0.3 690,694 + MPMX20_00672 0.30 +0.2 690,702 - MPMX20_00672 0.32 +0.6 690,723 - MPMX20_00672 0.35 -0.6 690,753 - MPMX20_00672 0.39 -0.2 690,753 - MPMX20_00672 0.39 -0.1 690,851 - MPMX20_00672 0.54 +0.2 690,884 - MPMX20_00672 0.58 +0.3 690,915 + MPMX20_00672 0.63 -1.1 690,920 - MPMX20_00672 0.64 -0.2 690,920 - MPMX20_00672 0.64 -0.7 690,920 - MPMX20_00672 0.64 -0.1 690,923 - MPMX20_00672 0.64 -1.5 690,923 - MPMX20_00672 0.64 +0.5 691,025 - MPMX20_00672 0.79 -0.2 691,093 + MPMX20_00672 0.89 -0.7 691,101 + -0.2 691,111 + -0.6 691,145 - +1.1 691,145 - -0.4 691,155 - -0.3 691,232 - -0.4 691,232 - +1.1 691,232 - -1.5 691,267 + -0.5 691,273 - -1.4 691,275 - -1.2 691,398 - -1.5 691,446 - MPMX20_00673 0.12 -3.0 691,474 + MPMX20_00673 0.14 -0.5 691,487 - MPMX20_00673 0.14 -1.1 691,580 - MPMX20_00673 0.20 -1.1 691,624 + MPMX20_00673 0.23 -0.4 691,634 + MPMX20_00673 0.24 -0.6 691,726 - MPMX20_00673 0.29 -0.1 691,771 - MPMX20_00673 0.32 +0.5 691,790 + MPMX20_00673 0.34 -2.5 691,790 + MPMX20_00673 0.34 -0.1 691,790 + MPMX20_00673 0.34 +0.1 691,790 + MPMX20_00673 0.34 -0.8 691,790 + MPMX20_00673 0.34 -0.8 691,790 + MPMX20_00673 0.34 -1.1 691,790 + MPMX20_00673 0.34 -0.9 691,798 - MPMX20_00673 0.34 -2.3 691,798 - MPMX20_00673 0.34 -0.8 691,798 - MPMX20_00673 0.34 +0.0 691,842 + MPMX20_00673 0.37 -1.1 691,850 - MPMX20_00673 0.37 -0.9 691,865 + MPMX20_00673 0.38 +0.1 691,953 - MPMX20_00673 0.44 +3.7 691,955 + MPMX20_00673 0.44 -2.1 691,955 + MPMX20_00673 0.44 -1.2 691,986 + MPMX20_00673 0.46 -2.8 692,044 - MPMX20_00673 0.49 -0.9 692,070 + MPMX20_00673 0.51 -2.0 692,072 + MPMX20_00673 0.51 -0.3 692,113 + MPMX20_00673 0.54 -1.1 692,168 + MPMX20_00673 0.57 -2.6 692,245 - MPMX20_00673 0.62 -1.4 692,296 + MPMX20_00673 0.65 -0.2 692,296 + MPMX20_00673 0.65 +0.1 692,296 + MPMX20_00673 0.65 -0.8 692,304 - MPMX20_00673 0.66 -1.5 692,304 - MPMX20_00673 0.66 -1.1 692,304 - MPMX20_00673 0.66 -2.3 692,304 - MPMX20_00673 0.66 -1.2 692,329 - MPMX20_00673 0.67 -3.3 692,368 + MPMX20_00673 0.70 +0.6 692,389 + MPMX20_00673 0.71 -1.7 692,397 - MPMX20_00673 0.72 -1.1 692,397 - MPMX20_00673 0.72 -2.1 692,399 + MPMX20_00673 0.72 +0.3 692,463 - MPMX20_00673 0.76 -1.4 692,529 + MPMX20_00673 0.80 -0.1 692,529 + MPMX20_00673 0.80 -0.7 692,537 - MPMX20_00673 0.81 -3.0 692,547 + MPMX20_00673 0.81 -0.9 692,583 + MPMX20_00673 0.83 -1.2 692,591 - MPMX20_00673 0.84 +0.6 692,612 + MPMX20_00673 0.85 -2.0 692,657 + MPMX20_00673 0.88 -0.7 692,674 + MPMX20_00673 0.89 -2.3 692,674 + MPMX20_00673 0.89 +0.1 692,674 + MPMX20_00673 0.89 -2.3 692,674 + MPMX20_00673 0.89 +0.3 692,674 + MPMX20_00673 0.89 -2.6 692,674 + MPMX20_00673 0.89 -0.7 692,674 + MPMX20_00673 0.89 -2.1 692,674 + MPMX20_00673 0.89 -2.5 692,674 + MPMX20_00673 0.89 -1.1 692,674 + MPMX20_00673 0.89 -0.7 692,674 + MPMX20_00673 0.89 +0.5 692,682 - MPMX20_00673 0.90 +0.1 692,682 - MPMX20_00673 0.90 -0.5 692,682 - MPMX20_00673 0.90 +0.0 692,778 - -0.5 692,779 + -1.1 692,783 - -0.7 692,783 - -1.1 692,785 + -1.1 692,785 + -0.8 692,785 + -1.4 692,785 + -0.3 692,785 + -0.5 692,786 + -1.7 692,817 + +0.1 692,817 + -0.0 692,825 - +0.0 692,825 - +0.5 692,835 + +1.5 692,835 + +0.9 692,843 + +0.4 692,849 - -0.4 692,852 + +0.1 692,852 + -1.7 692,852 + -1.2 692,853 + +0.1 692,860 - +0.3 692,896 + -0.4 692,985 - -2.1 692,992 + -1.9 693,004 + -0.4 693,004 + +0.7 693,004 + -0.3 693,004 + +0.4 693,006 + -0.5 693,006 + +1.7 693,006 + +0.3 693,012 - +0.4 693,012 - -0.6 693,014 - +0.2 693,014 - -1.7 693,014 - +0.2 693,014 - +0.3 693,014 - +0.4 693,035 + -0.4 693,035 - -0.2 693,047 + -0.0 693,055 - -1.7 693,055 - -0.6 693,122 + -1.5 693,127 + +0.6 693,129 + -0.2 693,130 - +0.1 693,130 - +0.1 693,130 - +0.2 693,130 - +0.9 693,135 - +0.1 693,137 - +1.7 693,139 + -2.0 693,147 - +0.4 693,162 + +0.1 693,190 + -0.2 693,190 + +0.9 693,190 + -0.7 693,195 + -0.9 693,198 - +0.0 693,198 - -0.8 693,213 - MPMX20_00674 0.10 +0.4 693,217 - MPMX20_00674 0.11 +0.1 693,220 + MPMX20_00674 0.11 -0.1 693,220 + MPMX20_00674 0.11 -1.0 693,220 + MPMX20_00674 0.11 +0.5 693,220 + MPMX20_00674 0.11 -1.4 693,223 - MPMX20_00674 0.12 +0.2 693,228 - MPMX20_00674 0.13 -1.7 693,228 - MPMX20_00674 0.13 +0.3 693,228 - MPMX20_00674 0.13 -0.4 693,228 - MPMX20_00674 0.13 -0.1 693,236 + MPMX20_00674 0.14 -0.6 693,236 + MPMX20_00674 0.14 +0.9 693,241 + MPMX20_00674 0.15 +0.5 693,244 - MPMX20_00674 0.15 -0.2 693,260 + MPMX20_00674 0.18 +0.3 693,268 - MPMX20_00674 0.19 -0.5 693,355 - MPMX20_00674 0.33 -2.3 693,355 - MPMX20_00674 0.33 +0.4 693,375 + MPMX20_00674 0.36 +0.2 693,383 - MPMX20_00674 0.38 -0.1 693,383 - MPMX20_00674 0.38 -0.9 693,444 + MPMX20_00674 0.48 -0.3 693,449 + MPMX20_00674 0.48 -0.1 693,452 - MPMX20_00674 0.49 +0.1 693,453 - MPMX20_00674 0.49 -0.2 693,457 - MPMX20_00674 0.50 +0.0 693,484 + MPMX20_00674 0.54 -0.2 693,484 + MPMX20_00674 0.54 -0.6 693,492 + MPMX20_00674 0.55 -0.8 693,492 + MPMX20_00674 0.55 -0.2 693,501 - MPMX20_00674 0.57 +1.3 693,530 - MPMX20_00674 0.61 -1.0 693,546 + MPMX20_00674 0.64 +0.1 693,554 - MPMX20_00674 0.65 -1.6 693,630 + MPMX20_00674 0.78 -0.7 693,767 + +0.2 693,767 + -0.1 693,775 + -0.4 693,775 + -0.3 693,789 + -0.9 693,797 - -0.7 693,798 - -0.3 693,843 + -0.2
Or see this region's nucleotide sequence