Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00643

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00642 and MPMX20_00643 are separated by 269 nucleotidesMPMX20_00643 and MPMX20_00644 overlap by 44 nucleotides MPMX20_00642: MPMX20_00642 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 667,402 to 668,679 _00642 MPMX20_00643: MPMX20_00643 - HTH-type transcriptional regulator FarR, at 668,949 to 669,389 _00643 MPMX20_00644: MPMX20_00644 - Methyl-accepting chemotaxis protein I, at 669,346 to 671,139 _00644 Position (kb) 668 669 670Strain fitness (log2 ratio) -2 -1 0 1 2at 667.992 kb on - strand, within MPMX20_00642at 668.007 kb on - strand, within MPMX20_00642at 668.009 kb on + strand, within MPMX20_00642at 668.017 kb on - strand, within MPMX20_00642at 668.017 kb on - strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.123 kb on + strand, within MPMX20_00642at 668.145 kb on + strand, within MPMX20_00642at 668.153 kb on - strand, within MPMX20_00642at 668.153 kb on - strand, within MPMX20_00642at 668.217 kb on - strand, within MPMX20_00642at 668.235 kb on + strand, within MPMX20_00642at 668.243 kb on - strand, within MPMX20_00642at 668.243 kb on - strand, within MPMX20_00642at 668.251 kb on - strand, within MPMX20_00642at 668.300 kb on - strand, within MPMX20_00642at 668.331 kb on + strand, within MPMX20_00642at 668.331 kb on + strand, within MPMX20_00642at 668.462 kb on + strand, within MPMX20_00642at 668.470 kb on - strand, within MPMX20_00642at 668.523 kb on + strand, within MPMX20_00642at 668.529 kb on - strand, within MPMX20_00642at 668.531 kb on - strand, within MPMX20_00642at 668.544 kb on + strand, within MPMX20_00642at 668.551 kb on + strand, within MPMX20_00642at 668.551 kb on + strand, within MPMX20_00642at 668.599 kb on - strandat 668.624 kb on - strandat 668.682 kb on + strandat 668.902 kb on - strandat 669.039 kb on + strand, within MPMX20_00643at 669.047 kb on - strand, within MPMX20_00643at 669.160 kb on - strand, within MPMX20_00643at 669.223 kb on + strand, within MPMX20_00643at 669.238 kb on + strand, within MPMX20_00643at 669.238 kb on + strand, within MPMX20_00643at 669.246 kb on - strand, within MPMX20_00643at 669.246 kb on - strand, within MPMX20_00643at 669.250 kb on - strand, within MPMX20_00643at 669.255 kb on - strand, within MPMX20_00643at 669.348 kb on + strandat 669.370 kb on - strandat 669.370 kb on - strandat 669.370 kb on - strandat 669.511 kb on - strandat 669.511 kb on - strandat 669.548 kb on - strand, within MPMX20_00644at 669.624 kb on + strand, within MPMX20_00644at 669.644 kb on + strand, within MPMX20_00644at 669.663 kb on - strand, within MPMX20_00644at 669.698 kb on + strand, within MPMX20_00644at 669.708 kb on + strand, within MPMX20_00644at 669.711 kb on - strand, within MPMX20_00644at 669.730 kb on + strand, within MPMX20_00644at 669.738 kb on - strand, within MPMX20_00644at 669.807 kb on + strand, within MPMX20_00644at 669.854 kb on - strand, within MPMX20_00644at 669.873 kb on - strand, within MPMX20_00644at 669.940 kb on + strand, within MPMX20_00644at 670.033 kb on + strand, within MPMX20_00644at 670.074 kb on + strand, within MPMX20_00644at 670.209 kb on - strand, within MPMX20_00644at 670.244 kb on + strand, within MPMX20_00644at 670.244 kb on + strand, within MPMX20_00644at 670.244 kb on + strand, within MPMX20_00644at 670.244 kb on + strand, within MPMX20_00644at 670.252 kb on - strand, within MPMX20_00644at 670.258 kb on + strand, within MPMX20_00644at 670.263 kb on + strand, within MPMX20_00644at 670.271 kb on - strand, within MPMX20_00644at 670.271 kb on - strand, within MPMX20_00644at 670.274 kb on + strand, within MPMX20_00644at 670.303 kb on + strand, within MPMX20_00644at 670.360 kb on + strand, within MPMX20_00644at 670.376 kb on + strand, within MPMX20_00644at 670.384 kb on - strand, within MPMX20_00644

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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667,992 - MPMX20_00642 0.46 +1.1
668,007 - MPMX20_00642 0.47 +0.7
668,009 + MPMX20_00642 0.47 +0.1
668,017 - MPMX20_00642 0.48 -0.2
668,017 - MPMX20_00642 0.48 +1.1
668,031 + MPMX20_00642 0.49 -0.1
668,031 + MPMX20_00642 0.49 +0.9
668,031 + MPMX20_00642 0.49 +0.1
668,039 - MPMX20_00642 0.50 -1.3
668,039 - MPMX20_00642 0.50 -0.4
668,039 - MPMX20_00642 0.50 -0.4
668,123 + MPMX20_00642 0.56 +0.4
668,145 + MPMX20_00642 0.58 +0.2
668,153 - MPMX20_00642 0.59 +0.4
668,153 - MPMX20_00642 0.59 +1.9
668,217 - MPMX20_00642 0.64 +0.1
668,235 + MPMX20_00642 0.65 -0.6
668,243 - MPMX20_00642 0.66 -0.8
668,243 - MPMX20_00642 0.66 +0.2
668,251 - MPMX20_00642 0.66 -0.8
668,300 - MPMX20_00642 0.70 -0.1
668,331 + MPMX20_00642 0.73 -0.4
668,331 + MPMX20_00642 0.73 +0.7
668,462 + MPMX20_00642 0.83 +0.5
668,470 - MPMX20_00642 0.84 +1.8
668,523 + MPMX20_00642 0.88 -0.4
668,529 - MPMX20_00642 0.88 +0.4
668,531 - MPMX20_00642 0.88 -0.7
668,544 + MPMX20_00642 0.89 -0.0
668,551 + MPMX20_00642 0.90 -1.1
668,551 + MPMX20_00642 0.90 -1.1
668,599 - +0.1
668,624 - -0.7
668,682 + +0.3
668,902 - +0.0
669,039 + MPMX20_00643 0.20 -0.2
669,047 - MPMX20_00643 0.22 -2.1
669,160 - MPMX20_00643 0.48 -0.3
669,223 + MPMX20_00643 0.62 -1.1
669,238 + MPMX20_00643 0.66 -0.2
669,238 + MPMX20_00643 0.66 -1.5
669,246 - MPMX20_00643 0.67 -1.2
669,246 - MPMX20_00643 0.67 -0.7
669,250 - MPMX20_00643 0.68 -1.7
669,255 - MPMX20_00643 0.69 -2.3
669,348 + -0.2
669,370 - -1.8
669,370 - +0.9
669,370 - -1.2
669,511 - -2.3
669,511 - +1.4
669,548 - MPMX20_00644 0.11 +0.1
669,624 + MPMX20_00644 0.15 +0.7
669,644 + MPMX20_00644 0.17 -0.3
669,663 - MPMX20_00644 0.18 -1.4
669,698 + MPMX20_00644 0.20 +0.3
669,708 + MPMX20_00644 0.20 +0.6
669,711 - MPMX20_00644 0.20 -1.0
669,730 + MPMX20_00644 0.21 -0.9
669,738 - MPMX20_00644 0.22 +0.4
669,807 + MPMX20_00644 0.26 -0.6
669,854 - MPMX20_00644 0.28 +0.6
669,873 - MPMX20_00644 0.29 -0.2
669,940 + MPMX20_00644 0.33 +0.2
670,033 + MPMX20_00644 0.38 +0.5
670,074 + MPMX20_00644 0.41 +1.7
670,209 - MPMX20_00644 0.48 +0.5
670,244 + MPMX20_00644 0.50 +0.9
670,244 + MPMX20_00644 0.50 -1.6
670,244 + MPMX20_00644 0.50 -0.1
670,244 + MPMX20_00644 0.50 -0.1
670,252 - MPMX20_00644 0.51 -0.3
670,258 + MPMX20_00644 0.51 -0.7
670,263 + MPMX20_00644 0.51 -1.9
670,271 - MPMX20_00644 0.52 -0.3
670,271 - MPMX20_00644 0.52 +0.6
670,274 + MPMX20_00644 0.52 -0.1
670,303 + MPMX20_00644 0.53 -0.4
670,360 + MPMX20_00644 0.57 -0.1
670,376 + MPMX20_00644 0.57 -0.7
670,384 - MPMX20_00644 0.58 +0.6

Or see this region's nucleotide sequence