Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00626

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00625 and MPMX20_00626 are separated by 44 nucleotidesMPMX20_00626 and MPMX20_00627 overlap by 1 nucleotidesMPMX20_00627 and MPMX20_00628 are separated by 412 nucleotides MPMX20_00625: MPMX20_00625 - Succinate-semialdehyde dehydrogenase [NADP(+)] 1, at 649,649 to 651,019 _00625 MPMX20_00626: MPMX20_00626 - hypothetical protein, at 651,064 to 651,384 _00626 MPMX20_00627: MPMX20_00627 - hypothetical protein, at 651,384 to 651,929 _00627 MPMX20_00628: MPMX20_00628 - hypothetical protein, at 652,342 to 653,700 _00628 Position (kb) 651 652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 650.083 kb on - strand, within MPMX20_00625at 650.116 kb on + strand, within MPMX20_00625at 650.134 kb on - strand, within MPMX20_00625at 650.136 kb on + strand, within MPMX20_00625at 650.136 kb on + strand, within MPMX20_00625at 650.136 kb on + strand, within MPMX20_00625at 650.138 kb on + strand, within MPMX20_00625at 650.144 kb on - strand, within MPMX20_00625at 650.144 kb on - strand, within MPMX20_00625at 650.144 kb on - strand, within MPMX20_00625at 650.146 kb on - strand, within MPMX20_00625at 650.153 kb on + strand, within MPMX20_00625at 650.184 kb on - strand, within MPMX20_00625at 650.190 kb on + strand, within MPMX20_00625at 650.244 kb on + strand, within MPMX20_00625at 650.336 kb on - strand, within MPMX20_00625at 650.353 kb on - strand, within MPMX20_00625at 650.387 kb on + strand, within MPMX20_00625at 650.416 kb on + strand, within MPMX20_00625at 650.426 kb on + strand, within MPMX20_00625at 650.426 kb on + strand, within MPMX20_00625at 650.431 kb on + strand, within MPMX20_00625at 650.431 kb on + strand, within MPMX20_00625at 650.431 kb on + strand, within MPMX20_00625at 650.434 kb on - strand, within MPMX20_00625at 650.439 kb on - strand, within MPMX20_00625at 650.457 kb on - strand, within MPMX20_00625at 650.478 kb on - strand, within MPMX20_00625at 650.523 kb on - strand, within MPMX20_00625at 650.558 kb on - strand, within MPMX20_00625at 650.599 kb on + strand, within MPMX20_00625at 650.632 kb on + strand, within MPMX20_00625at 650.632 kb on + strand, within MPMX20_00625at 650.670 kb on + strand, within MPMX20_00625at 650.703 kb on - strand, within MPMX20_00625at 650.718 kb on + strand, within MPMX20_00625at 650.718 kb on + strand, within MPMX20_00625at 650.726 kb on - strand, within MPMX20_00625at 650.749 kb on + strand, within MPMX20_00625at 650.757 kb on - strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.807 kb on + strand, within MPMX20_00625at 650.815 kb on - strand, within MPMX20_00625at 650.815 kb on - strand, within MPMX20_00625at 650.815 kb on - strand, within MPMX20_00625at 650.821 kb on - strand, within MPMX20_00625at 650.882 kb on + strand, within MPMX20_00625at 650.882 kb on + strand, within MPMX20_00625at 650.890 kb on - strandat 650.907 kb on - strandat 650.918 kb on - strandat 650.968 kb on - strandat 650.968 kb on - strandat 651.149 kb on + strand, within MPMX20_00626at 651.221 kb on + strand, within MPMX20_00626at 651.277 kb on + strand, within MPMX20_00626at 651.344 kb on - strand, within MPMX20_00626at 651.402 kb on + strandat 651.410 kb on - strandat 651.431 kb on + strandat 651.434 kb on - strandat 651.469 kb on + strand, within MPMX20_00627at 651.513 kb on - strand, within MPMX20_00627at 651.518 kb on - strand, within MPMX20_00627at 651.552 kb on + strand, within MPMX20_00627at 651.552 kb on + strand, within MPMX20_00627at 651.557 kb on - strand, within MPMX20_00627at 651.560 kb on - strand, within MPMX20_00627at 651.570 kb on + strand, within MPMX20_00627at 651.570 kb on + strand, within MPMX20_00627at 651.570 kb on + strand, within MPMX20_00627at 651.570 kb on + strand, within MPMX20_00627at 651.578 kb on - strand, within MPMX20_00627at 651.578 kb on - strand, within MPMX20_00627at 651.578 kb on - strand, within MPMX20_00627at 651.598 kb on + strand, within MPMX20_00627at 651.606 kb on - strand, within MPMX20_00627at 651.608 kb on + strand, within MPMX20_00627at 651.622 kb on - strand, within MPMX20_00627at 651.678 kb on - strand, within MPMX20_00627at 651.703 kb on + strand, within MPMX20_00627at 651.720 kb on - strand, within MPMX20_00627at 651.721 kb on - strand, within MPMX20_00627at 651.789 kb on + strand, within MPMX20_00627at 651.812 kb on - strand, within MPMX20_00627at 651.848 kb on + strand, within MPMX20_00627at 651.851 kb on + strand, within MPMX20_00627at 651.862 kb on + strand, within MPMX20_00627at 651.862 kb on + strand, within MPMX20_00627at 651.862 kb on + strand, within MPMX20_00627at 651.862 kb on + strand, within MPMX20_00627at 651.862 kb on + strand, within MPMX20_00627at 651.869 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.870 kb on - strand, within MPMX20_00627at 651.880 kb on - strandat 652.074 kb on + strandat 652.075 kb on + strandat 652.096 kb on + strandat 652.096 kb on - strandat 652.096 kb on - strandat 652.132 kb on - strandat 652.134 kb on + strandat 652.147 kb on - strandat 652.271 kb on + strandat 652.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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650,083 - MPMX20_00625 0.32 +0.1
650,116 + MPMX20_00625 0.34 -0.5
650,134 - MPMX20_00625 0.35 +0.4
650,136 + MPMX20_00625 0.36 +0.4
650,136 + MPMX20_00625 0.36 +0.0
650,136 + MPMX20_00625 0.36 -1.3
650,138 + MPMX20_00625 0.36 +0.2
650,144 - MPMX20_00625 0.36 -0.5
650,144 - MPMX20_00625 0.36 -0.1
650,144 - MPMX20_00625 0.36 +0.3
650,146 - MPMX20_00625 0.36 +0.8
650,153 + MPMX20_00625 0.37 +0.0
650,184 - MPMX20_00625 0.39 -1.1
650,190 + MPMX20_00625 0.39 -0.4
650,244 + MPMX20_00625 0.43 -0.5
650,336 - MPMX20_00625 0.50 -0.1
650,353 - MPMX20_00625 0.51 +0.1
650,387 + MPMX20_00625 0.54 +0.1
650,416 + MPMX20_00625 0.56 +0.8
650,426 + MPMX20_00625 0.57 -0.2
650,426 + MPMX20_00625 0.57 +0.3
650,431 + MPMX20_00625 0.57 +0.3
650,431 + MPMX20_00625 0.57 -1.7
650,431 + MPMX20_00625 0.57 -1.0
650,434 - MPMX20_00625 0.57 +0.7
650,439 - MPMX20_00625 0.58 -0.3
650,457 - MPMX20_00625 0.59 +0.0
650,478 - MPMX20_00625 0.60 -2.0
650,523 - MPMX20_00625 0.64 +0.2
650,558 - MPMX20_00625 0.66 +0.6
650,599 + MPMX20_00625 0.69 -0.7
650,632 + MPMX20_00625 0.72 -0.3
650,632 + MPMX20_00625 0.72 +0.5
650,670 + MPMX20_00625 0.74 +0.6
650,703 - MPMX20_00625 0.77 -1.8
650,718 + MPMX20_00625 0.78 -0.2
650,718 + MPMX20_00625 0.78 +2.6
650,726 - MPMX20_00625 0.79 -0.1
650,749 + MPMX20_00625 0.80 -0.4
650,757 - MPMX20_00625 0.81 +0.6
650,807 + MPMX20_00625 0.84 -0.7
650,807 + MPMX20_00625 0.84 -0.4
650,807 + MPMX20_00625 0.84 +0.3
650,807 + MPMX20_00625 0.84 -0.3
650,807 + MPMX20_00625 0.84 -0.4
650,807 + MPMX20_00625 0.84 -2.4
650,807 + MPMX20_00625 0.84 +0.6
650,807 + MPMX20_00625 0.84 +0.6
650,807 + MPMX20_00625 0.84 +0.5
650,815 - MPMX20_00625 0.85 -0.7
650,815 - MPMX20_00625 0.85 -0.6
650,815 - MPMX20_00625 0.85 +0.5
650,821 - MPMX20_00625 0.85 -0.7
650,882 + MPMX20_00625 0.90 -0.4
650,882 + MPMX20_00625 0.90 -0.5
650,890 - -0.3
650,907 - +0.9
650,918 - -1.0
650,968 - +2.8
650,968 - +0.4
651,149 + MPMX20_00626 0.26 -0.5
651,221 + MPMX20_00626 0.49 -0.4
651,277 + MPMX20_00626 0.66 -1.1
651,344 - MPMX20_00626 0.87 -1.6
651,402 + -0.1
651,410 - -0.7
651,431 + -1.6
651,434 - +0.1
651,469 + MPMX20_00627 0.16 -0.5
651,513 - MPMX20_00627 0.24 -0.5
651,518 - MPMX20_00627 0.25 +0.1
651,552 + MPMX20_00627 0.31 -0.3
651,552 + MPMX20_00627 0.31 +0.1
651,557 - MPMX20_00627 0.32 -1.0
651,560 - MPMX20_00627 0.32 +1.0
651,570 + MPMX20_00627 0.34 -1.1
651,570 + MPMX20_00627 0.34 +0.4
651,570 + MPMX20_00627 0.34 +0.1
651,570 + MPMX20_00627 0.34 +0.1
651,578 - MPMX20_00627 0.36 -0.3
651,578 - MPMX20_00627 0.36 -0.2
651,578 - MPMX20_00627 0.36 -0.2
651,598 + MPMX20_00627 0.39 -0.5
651,606 - MPMX20_00627 0.41 -0.3
651,608 + MPMX20_00627 0.41 -0.2
651,622 - MPMX20_00627 0.44 +0.1
651,678 - MPMX20_00627 0.54 -0.5
651,703 + MPMX20_00627 0.58 +0.5
651,720 - MPMX20_00627 0.62 +0.2
651,721 - MPMX20_00627 0.62 -1.1
651,789 + MPMX20_00627 0.74 -0.5
651,812 - MPMX20_00627 0.78 -0.5
651,848 + MPMX20_00627 0.85 +0.9
651,851 + MPMX20_00627 0.86 +0.8
651,862 + MPMX20_00627 0.88 +0.3
651,862 + MPMX20_00627 0.88 -1.1
651,862 + MPMX20_00627 0.88 +1.3
651,862 + MPMX20_00627 0.88 -0.3
651,862 + MPMX20_00627 0.88 -0.8
651,869 - MPMX20_00627 0.89 -0.1
651,870 - MPMX20_00627 0.89 +0.7
651,870 - MPMX20_00627 0.89 -0.0
651,870 - MPMX20_00627 0.89 +0.1
651,870 - MPMX20_00627 0.89 -1.2
651,870 - MPMX20_00627 0.89 -0.9
651,870 - MPMX20_00627 0.89 +0.5
651,880 - -0.1
652,074 + +0.3
652,075 + -0.7
652,096 + -0.5
652,096 - -1.6
652,096 - +2.5
652,132 - +0.0
652,134 + +0.6
652,147 - +0.4
652,271 + +0.7
652,373 + -0.4

Or see this region's nucleotide sequence