Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00455 and MPMX20_00456 are separated by 2 nucleotides MPMX20_00456 and MPMX20_00457 are separated by 71 nucleotides MPMX20_00457 and MPMX20_00458 are separated by 62 nucleotides
MPMX20_00455: MPMX20_00455 - Modulator of FtsH protease HflK, at 469,853 to 471,115
_00455
MPMX20_00456: MPMX20_00456 - Modulator of FtsH protease HflC, at 471,118 to 472,122
_00456
MPMX20_00457: MPMX20_00457 - hypothetical protein, at 472,194 to 472,391
_00457
MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794
_00458
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 470.130 kb on - strand, within MPMX20_00455 at 470.140 kb on + strand, within MPMX20_00455 at 470.203 kb on + strand, within MPMX20_00455 at 470.312 kb on - strand, within MPMX20_00455 at 470.312 kb on - strand, within MPMX20_00455 at 470.388 kb on + strand, within MPMX20_00455 at 470.428 kb on + strand, within MPMX20_00455 at 470.501 kb on - strand, within MPMX20_00455 at 470.563 kb on + strand, within MPMX20_00455 at 470.571 kb on - strand, within MPMX20_00455 at 470.571 kb on - strand, within MPMX20_00455 at 470.590 kb on + strand, within MPMX20_00455 at 470.665 kb on + strand, within MPMX20_00455 at 470.668 kb on - strand, within MPMX20_00455 at 470.675 kb on + strand, within MPMX20_00455 at 470.694 kb on + strand, within MPMX20_00455 at 470.702 kb on - strand, within MPMX20_00455 at 470.735 kb on + strand, within MPMX20_00455 at 470.753 kb on + strand, within MPMX20_00455 at 470.758 kb on + strand, within MPMX20_00455 at 470.758 kb on + strand, within MPMX20_00455 at 470.758 kb on + strand, within MPMX20_00455 at 470.758 kb on + strand, within MPMX20_00455 at 470.812 kb on - strand, within MPMX20_00455 at 470.871 kb on + strand, within MPMX20_00455 at 470.879 kb on - strand, within MPMX20_00455 at 470.910 kb on - strand, within MPMX20_00455 at 471.085 kb on + strand at 471.093 kb on - strand at 471.093 kb on - strand at 471.128 kb on + strand at 471.276 kb on - strand, within MPMX20_00456 at 471.291 kb on + strand, within MPMX20_00456 at 471.325 kb on - strand, within MPMX20_00456 at 471.410 kb on - strand, within MPMX20_00456 at 471.428 kb on + strand, within MPMX20_00456 at 471.428 kb on + strand, within MPMX20_00456 at 471.590 kb on - strand, within MPMX20_00456 at 471.663 kb on - strand, within MPMX20_00456 at 471.705 kb on + strand, within MPMX20_00456 at 471.705 kb on + strand, within MPMX20_00456 at 471.713 kb on - strand, within MPMX20_00456 at 471.715 kb on + strand, within MPMX20_00456 at 471.715 kb on - strand, within MPMX20_00456 at 471.723 kb on - strand, within MPMX20_00456 at 471.743 kb on + strand, within MPMX20_00456 at 471.774 kb on + strand, within MPMX20_00456 at 471.784 kb on + strand, within MPMX20_00456 at 471.842 kb on + strand, within MPMX20_00456 at 471.898 kb on - strand, within MPMX20_00456 at 471.928 kb on - strand, within MPMX20_00456 at 471.928 kb on - strand, within MPMX20_00456 at 471.935 kb on + strand, within MPMX20_00456 at 471.993 kb on - strand, within MPMX20_00456 at 472.104 kb on + strand at 472.104 kb on + strand at 472.104 kb on + strand at 472.141 kb on + strand at 472.210 kb on + strand at 472.220 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.280 kb on + strand, within MPMX20_00457 at 472.288 kb on - strand, within MPMX20_00457 at 472.291 kb on + strand, within MPMX20_00457 at 472.336 kb on + strand, within MPMX20_00457 at 472.336 kb on + strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 470,130 - MPMX20_00455 0.22 -1.4 470,140 + MPMX20_00455 0.23 -0.7 470,203 + MPMX20_00455 0.28 -2.3 470,312 - MPMX20_00455 0.36 -0.9 470,312 - MPMX20_00455 0.36 +0.4 470,388 + MPMX20_00455 0.42 +0.3 470,428 + MPMX20_00455 0.46 -1.9 470,501 - MPMX20_00455 0.51 -0.8 470,563 + MPMX20_00455 0.56 -0.5 470,571 - MPMX20_00455 0.57 -0.7 470,571 - MPMX20_00455 0.57 -0.8 470,590 + MPMX20_00455 0.58 -2.1 470,665 + MPMX20_00455 0.64 -0.6 470,668 - MPMX20_00455 0.65 -0.4 470,675 + MPMX20_00455 0.65 -0.8 470,694 + MPMX20_00455 0.67 -0.2 470,702 - MPMX20_00455 0.67 -0.2 470,735 + MPMX20_00455 0.70 -0.6 470,753 + MPMX20_00455 0.71 -0.9 470,758 + MPMX20_00455 0.72 -1.5 470,758 + MPMX20_00455 0.72 -0.9 470,758 + MPMX20_00455 0.72 -1.0 470,758 + MPMX20_00455 0.72 -1.8 470,812 - MPMX20_00455 0.76 -0.8 470,871 + MPMX20_00455 0.81 -0.7 470,879 - MPMX20_00455 0.81 +0.3 470,910 - MPMX20_00455 0.84 -2.7 471,085 + -0.8 471,093 - +0.7 471,093 - -1.1 471,128 + +0.6 471,276 - MPMX20_00456 0.16 +0.7 471,291 + MPMX20_00456 0.17 +0.8 471,325 - MPMX20_00456 0.21 -0.9 471,410 - MPMX20_00456 0.29 -1.3 471,428 + MPMX20_00456 0.31 -0.9 471,428 + MPMX20_00456 0.31 -0.4 471,590 - MPMX20_00456 0.47 -3.0 471,663 - MPMX20_00456 0.54 -0.8 471,705 + MPMX20_00456 0.58 -2.2 471,705 + MPMX20_00456 0.58 -2.1 471,713 - MPMX20_00456 0.59 -0.5 471,715 + MPMX20_00456 0.59 -0.3 471,715 - MPMX20_00456 0.59 -1.1 471,723 - MPMX20_00456 0.60 -2.7 471,743 + MPMX20_00456 0.62 -0.8 471,774 + MPMX20_00456 0.65 -2.1 471,784 + MPMX20_00456 0.66 -1.3 471,842 + MPMX20_00456 0.72 -1.0 471,898 - MPMX20_00456 0.78 -1.0 471,928 - MPMX20_00456 0.81 -1.5 471,928 - MPMX20_00456 0.81 -0.4 471,935 + MPMX20_00456 0.81 -1.1 471,993 - MPMX20_00456 0.87 -2.1 472,104 + -1.7 472,104 + -1.1 472,104 + -0.5 472,141 + -0.9 472,210 + -0.9 472,220 + MPMX20_00457 0.13 -0.3 472,243 + MPMX20_00457 0.25 -2.4 472,243 + MPMX20_00457 0.25 +0.6 472,243 + MPMX20_00457 0.25 -0.7 472,280 + MPMX20_00457 0.43 -2.1 472,288 - MPMX20_00457 0.47 +0.2 472,291 + MPMX20_00457 0.49 +0.0 472,336 + MPMX20_00457 0.72 -2.0 472,336 + MPMX20_00457 0.72 -0.3 472,344 - MPMX20_00457 0.76 -1.1 472,344 - MPMX20_00457 0.76 -0.2 472,344 - MPMX20_00457 0.76 +0.1 472,344 - MPMX20_00457 0.76 -0.3
Or see this region's nucleotide sequence