Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00257 and MPMX20_00258 are separated by 154 nucleotides MPMX20_00258 and MPMX20_00259 are separated by 108 nucleotides MPMX20_00259 and MPMX20_00260 are separated by 63 nucleotides
MPMX20_00257: MPMX20_00257 - Glycerol-3-phosphate acyltransferase, at 274,588 to 277,008
_00257
MPMX20_00258: MPMX20_00258 - Diacylglycerol kinase, at 277,163 to 277,531
_00258
MPMX20_00259: MPMX20_00259 - LexA repressor, at 277,640 to 278,248
_00259
MPMX20_00260: MPMX20_00260 - DNA damage-inducible protein F, at 278,312 to 279,649
_00260
Position (kb) 277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 277.060 kb on - strand at 277.087 kb on + strand at 277.094 kb on + strand at 277.102 kb on - strand at 277.104 kb on + strand at 277.123 kb on - strand at 277.128 kb on - strand at 277.174 kb on - strand at 277.176 kb on + strand at 277.189 kb on - strand at 277.195 kb on + strand at 277.203 kb on - strand, within MPMX20_00258 at 277.203 kb on - strand, within MPMX20_00258 at 277.235 kb on + strand, within MPMX20_00258 at 277.235 kb on + strand, within MPMX20_00258 at 277.243 kb on - strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.354 kb on + strand, within MPMX20_00258 at 277.396 kb on - strand, within MPMX20_00258 at 277.438 kb on - strand, within MPMX20_00258 at 277.450 kb on - strand, within MPMX20_00258 at 277.456 kb on - strand, within MPMX20_00258 at 277.458 kb on - strand, within MPMX20_00258 at 277.458 kb on - strand, within MPMX20_00258 at 277.495 kb on + strand at 277.500 kb on + strand at 277.510 kb on + strand at 278.269 kb on + strand at 278.274 kb on + strand at 278.274 kb on + strand at 278.274 kb on + strand at 278.282 kb on - strand at 278.284 kb on + strand at 278.392 kb on + strand at 278.512 kb on + strand, within MPMX20_00260 at 278.529 kb on + strand, within MPMX20_00260
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 277,060 - -1.4 277,087 + -0.1 277,094 + +0.9 277,102 - -0.1 277,104 + -0.1 277,123 - +0.5 277,128 - -1.3 277,174 - -2.7 277,176 + -3.3 277,189 - -1.6 277,195 + -1.4 277,203 - MPMX20_00258 0.11 -1.1 277,203 - MPMX20_00258 0.11 -0.7 277,235 + MPMX20_00258 0.20 -1.1 277,235 + MPMX20_00258 0.20 -1.2 277,243 - MPMX20_00258 0.22 -0.2 277,344 + MPMX20_00258 0.49 -1.7 277,344 + MPMX20_00258 0.49 -0.1 277,344 + MPMX20_00258 0.49 -0.7 277,352 - MPMX20_00258 0.51 -2.2 277,352 - MPMX20_00258 0.51 +0.2 277,352 - MPMX20_00258 0.51 -2.0 277,354 + MPMX20_00258 0.52 -2.1 277,396 - MPMX20_00258 0.63 -2.0 277,438 - MPMX20_00258 0.75 +0.5 277,450 - MPMX20_00258 0.78 -1.9 277,456 - MPMX20_00258 0.79 +0.9 277,458 - MPMX20_00258 0.80 -0.4 277,458 - MPMX20_00258 0.80 -1.7 277,495 + -3.0 277,500 + -1.3 277,510 + -1.1 278,269 + +1.9 278,274 + -1.1 278,274 + -0.3 278,274 + +0.2 278,282 - +0.3 278,284 + +0.5 278,392 + -0.2 278,512 + MPMX20_00260 0.15 -0.5 278,529 + MPMX20_00260 0.16 -0.5
Or see this region's nucleotide sequence