Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00226

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00225 and MPMX20_00226 are separated by 15 nucleotidesMPMX20_00226 and MPMX20_00227 are separated by 565 nucleotides MPMX20_00225: MPMX20_00225 - Phosphoribosylamine--glycine ligase, at 232,842 to 234,134 _00225 MPMX20_00226: MPMX20_00226 - Bifunctional purine biosynthesis protein PurH, at 234,150 to 235,739 _00226 MPMX20_00227: MPMX20_00227 - 16S ribosomal RNA, at 236,305 to 237,840 _00227 Position (kb) 234 235 236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 233.164 kb on + strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.315 kb on + strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.328 kb on - strand, within MPMX20_00225at 233.341 kb on + strand, within MPMX20_00225at 233.348 kb on - strand, within MPMX20_00225at 233.387 kb on + strand, within MPMX20_00225at 233.392 kb on + strand, within MPMX20_00225at 233.400 kb on + strand, within MPMX20_00225at 233.400 kb on - strand, within MPMX20_00225at 233.420 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.741 kb on + strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.747 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.827 kb on + strand, within MPMX20_00225at 233.835 kb on - strand, within MPMX20_00225at 233.844 kb on + strand, within MPMX20_00225at 233.852 kb on - strand, within MPMX20_00225at 233.886 kb on + strand, within MPMX20_00225at 233.915 kb on + strand, within MPMX20_00225at 234.011 kb on - strandat 234.038 kb on - strandat 234.039 kb on - strandat 234.039 kb on - strandat 234.180 kb on + strandat 234.248 kb on + strandat 234.248 kb on + strandat 234.258 kb on + strandat 234.390 kb on - strand, within MPMX20_00226at 234.396 kb on + strand, within MPMX20_00226at 234.396 kb on + strand, within MPMX20_00226at 234.396 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.421 kb on + strand, within MPMX20_00226at 234.606 kb on + strand, within MPMX20_00226at 234.606 kb on + strand, within MPMX20_00226at 234.636 kb on - strand, within MPMX20_00226at 234.749 kb on - strand, within MPMX20_00226at 234.785 kb on - strand, within MPMX20_00226at 234.921 kb on + strand, within MPMX20_00226at 234.929 kb on - strand, within MPMX20_00226at 234.929 kb on - strand, within MPMX20_00226at 234.937 kb on + strand, within MPMX20_00226at 234.969 kb on + strand, within MPMX20_00226at 234.977 kb on - strand, within MPMX20_00226at 234.977 kb on - strand, within MPMX20_00226at 234.985 kb on - strand, within MPMX20_00226at 235.021 kb on + strand, within MPMX20_00226at 235.042 kb on - strand, within MPMX20_00226at 235.060 kb on + strand, within MPMX20_00226at 235.068 kb on - strand, within MPMX20_00226at 235.099 kb on + strand, within MPMX20_00226at 235.110 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on - strand, within MPMX20_00226at 235.126 kb on - strand, within MPMX20_00226at 235.126 kb on - strand, within MPMX20_00226at 235.227 kb on + strand, within MPMX20_00226at 235.252 kb on - strand, within MPMX20_00226at 235.377 kb on + strand, within MPMX20_00226at 235.420 kb on + strand, within MPMX20_00226at 235.435 kb on - strand, within MPMX20_00226at 235.517 kb on - strand, within MPMX20_00226at 235.531 kb on + strand, within MPMX20_00226at 235.531 kb on + strand, within MPMX20_00226at 235.531 kb on - strand, within MPMX20_00226at 235.533 kb on + strand, within MPMX20_00226at 235.539 kb on - strand, within MPMX20_00226at 235.539 kb on - strand, within MPMX20_00226at 235.539 kb on - strand, within MPMX20_00226at 235.604 kb on - strandat 235.633 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.640 kb on + strandat 235.640 kb on + strandat 235.640 kb on + strandat 235.643 kb on - strandat 235.648 kb on - strandat 235.648 kb on - strandat 235.648 kb on - strandat 235.657 kb on + strandat 235.699 kb on + strandat 235.699 kb on + strandat 235.699 kb on + strandat 235.707 kb on - strandat 235.707 kb on - strandat 235.747 kb on + strandat 235.768 kb on - strandat 235.818 kb on - strandat 235.988 kb on - strandat 235.990 kb on + strandat 235.990 kb on + strandat 235.990 kb on + strandat 235.990 kb on + strandat 235.990 kb on + strandat 235.998 kb on - strandat 235.998 kb on - strandat 235.998 kb on - strandat 235.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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233,164 + MPMX20_00225 0.25 +1.0
233,224 - MPMX20_00225 0.30 -1.6
233,224 - MPMX20_00225 0.30 -0.9
233,315 + MPMX20_00225 0.37 +0.4
233,323 - MPMX20_00225 0.37 -0.7
233,323 - MPMX20_00225 0.37 -1.1
233,328 - MPMX20_00225 0.38 +0.1
233,341 + MPMX20_00225 0.39 +0.2
233,348 - MPMX20_00225 0.39 -2.8
233,387 + MPMX20_00225 0.42 -2.2
233,392 + MPMX20_00225 0.43 -2.3
233,400 + MPMX20_00225 0.43 -0.3
233,400 - MPMX20_00225 0.43 -1.7
233,420 + MPMX20_00225 0.45 -1.3
233,625 + MPMX20_00225 0.61 -2.1
233,625 + MPMX20_00225 0.61 -2.3
233,633 - MPMX20_00225 0.61 -2.1
233,633 - MPMX20_00225 0.61 -0.9
233,633 - MPMX20_00225 0.61 -1.6
233,741 + MPMX20_00225 0.70 +0.3
233,744 - MPMX20_00225 0.70 -0.7
233,744 - MPMX20_00225 0.70 +0.9
233,744 - MPMX20_00225 0.70 -1.2
233,747 + MPMX20_00225 0.70 -0.2
233,787 + MPMX20_00225 0.73 +0.8
233,787 + MPMX20_00225 0.73 +0.0
233,787 + MPMX20_00225 0.73 -0.2
233,787 + MPMX20_00225 0.73 -0.8
233,787 + MPMX20_00225 0.73 -0.9
233,827 + MPMX20_00225 0.76 +0.8
233,835 - MPMX20_00225 0.77 -0.9
233,844 + MPMX20_00225 0.77 -0.4
233,852 - MPMX20_00225 0.78 +0.9
233,886 + MPMX20_00225 0.81 +1.3
233,915 + MPMX20_00225 0.83 -1.4
234,011 - +2.1
234,038 - -0.8
234,039 - -1.2
234,039 - -0.7
234,180 + -1.1
234,248 + -0.8
234,248 + -0.8
234,258 + -4.0
234,390 - MPMX20_00226 0.15 -2.3
234,396 + MPMX20_00226 0.15 -1.4
234,396 + MPMX20_00226 0.15 -0.6
234,396 - MPMX20_00226 0.15 -1.7
234,404 - MPMX20_00226 0.16 -0.5
234,404 - MPMX20_00226 0.16 +0.5
234,404 - MPMX20_00226 0.16 -2.3
234,404 - MPMX20_00226 0.16 -1.1
234,421 + MPMX20_00226 0.17 +0.8
234,606 + MPMX20_00226 0.29 -1.6
234,606 + MPMX20_00226 0.29 -0.7
234,636 - MPMX20_00226 0.31 -0.4
234,749 - MPMX20_00226 0.38 +2.1
234,785 - MPMX20_00226 0.40 -1.6
234,921 + MPMX20_00226 0.48 -2.6
234,929 - MPMX20_00226 0.49 -0.6
234,929 - MPMX20_00226 0.49 -1.6
234,937 + MPMX20_00226 0.49 -2.6
234,969 + MPMX20_00226 0.52 -0.9
234,977 - MPMX20_00226 0.52 -0.5
234,977 - MPMX20_00226 0.52 -2.7
234,985 - MPMX20_00226 0.53 -1.2
235,021 + MPMX20_00226 0.55 -1.0
235,042 - MPMX20_00226 0.56 -0.8
235,060 + MPMX20_00226 0.57 -2.0
235,068 - MPMX20_00226 0.58 -1.2
235,099 + MPMX20_00226 0.60 -1.4
235,110 + MPMX20_00226 0.60 -0.6
235,118 + MPMX20_00226 0.61 +0.9
235,118 + MPMX20_00226 0.61 -0.9
235,118 + MPMX20_00226 0.61 -0.1
235,118 - MPMX20_00226 0.61 -0.7
235,126 - MPMX20_00226 0.61 +0.4
235,126 - MPMX20_00226 0.61 -1.8
235,227 + MPMX20_00226 0.68 -1.0
235,252 - MPMX20_00226 0.69 -1.0
235,377 + MPMX20_00226 0.77 -1.8
235,420 + MPMX20_00226 0.80 -1.2
235,435 - MPMX20_00226 0.81 +1.3
235,517 - MPMX20_00226 0.86 -0.1
235,531 + MPMX20_00226 0.87 -0.1
235,531 + MPMX20_00226 0.87 -1.4
235,531 - MPMX20_00226 0.87 -1.3
235,533 + MPMX20_00226 0.87 -0.3
235,539 - MPMX20_00226 0.87 -2.6
235,539 - MPMX20_00226 0.87 -0.1
235,539 - MPMX20_00226 0.87 -1.2
235,604 - -0.5
235,633 - -0.5
235,638 - -0.1
235,638 - -1.3
235,640 + -1.4
235,640 + -0.1
235,640 + +0.2
235,643 - -2.7
235,648 - -1.9
235,648 - -0.8
235,648 - -1.4
235,657 + -1.2
235,699 + -0.4
235,699 + -2.4
235,699 + -1.0
235,707 - -3.6
235,707 - -1.9
235,747 + -0.8
235,768 - -0.2
235,818 - +0.9
235,988 - +0.1
235,990 + -0.2
235,990 + +0.3
235,990 + -0.5
235,990 + +1.3
235,990 + -0.1
235,998 - -0.2
235,998 - +0.8
235,998 - -0.0
235,998 - +0.1

Or see this region's nucleotide sequence