Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00093

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00091 and MPMX20_00092 are separated by 125 nucleotidesMPMX20_00092 and MPMX20_00093 are separated by 68 nucleotidesMPMX20_00093 and MPMX20_00094 are separated by 39 nucleotidesMPMX20_00094 and MPMX20_00095 are separated by 120 nucleotides MPMX20_00091: MPMX20_00091 - hypothetical protein, at 94,683 to 95,546 _00091 MPMX20_00092: MPMX20_00092 - Ribonuclease PH, at 95,672 to 96,388 _00092 MPMX20_00093: MPMX20_00093 - Orotate phosphoribosyltransferase, at 96,457 to 97,098 _00093 MPMX20_00094: MPMX20_00094 - Nucleoid occlusion factor SlmA, at 97,138 to 97,734 _00094 MPMX20_00095: MPMX20_00095 - Deoxyuridine 5'-triphosphate nucleotidohydrolase, at 97,855 to 98,313 _00095 Position (kb) 96 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 95.470 kb on - strandat 95.470 kb on - strandat 95.470 kb on - strandat 95.477 kb on + strandat 95.502 kb on - strandat 95.574 kb on - strandat 95.587 kb on - strandat 95.597 kb on + strandat 95.696 kb on + strandat 95.714 kb on + strandat 95.722 kb on - strandat 95.722 kb on - strandat 95.748 kb on + strand, within MPMX20_00092at 95.758 kb on + strand, within MPMX20_00092at 95.780 kb on + strand, within MPMX20_00092at 95.790 kb on - strand, within MPMX20_00092at 95.828 kb on + strand, within MPMX20_00092at 95.828 kb on + strand, within MPMX20_00092at 95.828 kb on + strand, within MPMX20_00092at 95.858 kb on - strand, within MPMX20_00092at 95.879 kb on + strand, within MPMX20_00092at 95.879 kb on + strand, within MPMX20_00092at 95.887 kb on - strand, within MPMX20_00092at 95.955 kb on + strand, within MPMX20_00092at 95.955 kb on + strand, within MPMX20_00092at 96.008 kb on + strand, within MPMX20_00092at 96.016 kb on - strand, within MPMX20_00092at 96.016 kb on - strand, within MPMX20_00092at 96.016 kb on - strand, within MPMX20_00092at 96.041 kb on + strand, within MPMX20_00092at 96.097 kb on - strand, within MPMX20_00092at 96.103 kb on + strand, within MPMX20_00092at 96.118 kb on + strand, within MPMX20_00092at 96.118 kb on + strand, within MPMX20_00092at 96.217 kb on - strand, within MPMX20_00092at 96.218 kb on + strand, within MPMX20_00092at 96.227 kb on + strand, within MPMX20_00092at 96.274 kb on + strand, within MPMX20_00092at 96.274 kb on + strand, within MPMX20_00092at 96.276 kb on - strand, within MPMX20_00092at 96.287 kb on + strand, within MPMX20_00092at 96.300 kb on + strand, within MPMX20_00092at 96.406 kb on - strandat 96.446 kb on + strandat 96.479 kb on - strandat 96.561 kb on - strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.627 kb on + strand, within MPMX20_00093at 96.633 kb on - strand, within MPMX20_00093at 96.723 kb on + strand, within MPMX20_00093at 96.726 kb on - strand, within MPMX20_00093at 96.738 kb on + strand, within MPMX20_00093at 96.741 kb on - strand, within MPMX20_00093at 96.751 kb on - strand, within MPMX20_00093at 96.767 kb on - strand, within MPMX20_00093at 96.810 kb on - strand, within MPMX20_00093at 96.810 kb on - strand, within MPMX20_00093at 96.830 kb on - strand, within MPMX20_00093at 96.887 kb on + strand, within MPMX20_00093at 96.895 kb on - strand, within MPMX20_00093at 96.895 kb on - strand, within MPMX20_00093at 96.980 kb on + strand, within MPMX20_00093at 96.980 kb on + strand, within MPMX20_00093at 96.988 kb on - strand, within MPMX20_00093at 97.115 kb on + strandat 97.151 kb on + strandat 97.218 kb on - strand, within MPMX20_00094at 97.233 kb on - strand, within MPMX20_00094at 97.266 kb on + strand, within MPMX20_00094at 97.287 kb on - strand, within MPMX20_00094at 97.319 kb on + strand, within MPMX20_00094at 97.325 kb on - strand, within MPMX20_00094at 97.334 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.390 kb on + strand, within MPMX20_00094at 97.403 kb on - strand, within MPMX20_00094at 97.410 kb on + strand, within MPMX20_00094at 97.418 kb on - strand, within MPMX20_00094at 97.432 kb on + strand, within MPMX20_00094at 97.447 kb on - strand, within MPMX20_00094at 97.626 kb on + strand, within MPMX20_00094at 97.629 kb on + strand, within MPMX20_00094at 97.634 kb on - strand, within MPMX20_00094at 97.713 kb on - strandat 97.802 kb on - strandat 97.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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95,470 - +0.2
95,470 - +0.7
95,470 - +0.9
95,477 + -1.0
95,502 - -0.7
95,574 - -0.2
95,587 - -2.1
95,597 + +0.1
95,696 + -2.3
95,714 + -0.5
95,722 - +0.4
95,722 - -0.0
95,748 + MPMX20_00092 0.11 +0.0
95,758 + MPMX20_00092 0.12 -0.7
95,780 + MPMX20_00092 0.15 -0.6
95,790 - MPMX20_00092 0.16 -0.4
95,828 + MPMX20_00092 0.22 -1.9
95,828 + MPMX20_00092 0.22 -1.1
95,828 + MPMX20_00092 0.22 -0.3
95,858 - MPMX20_00092 0.26 -2.2
95,879 + MPMX20_00092 0.29 -0.4
95,879 + MPMX20_00092 0.29 +0.9
95,887 - MPMX20_00092 0.30 +1.0
95,955 + MPMX20_00092 0.39 -0.2
95,955 + MPMX20_00092 0.39 -0.8
96,008 + MPMX20_00092 0.47 +1.2
96,016 - MPMX20_00092 0.48 +1.9
96,016 - MPMX20_00092 0.48 -1.6
96,016 - MPMX20_00092 0.48 -0.7
96,041 + MPMX20_00092 0.51 -0.5
96,097 - MPMX20_00092 0.59 +0.1
96,103 + MPMX20_00092 0.60 +0.1
96,118 + MPMX20_00092 0.62 +0.1
96,118 + MPMX20_00092 0.62 -1.7
96,217 - MPMX20_00092 0.76 -0.1
96,218 + MPMX20_00092 0.76 -0.2
96,227 + MPMX20_00092 0.77 -1.0
96,274 + MPMX20_00092 0.84 -0.8
96,274 + MPMX20_00092 0.84 -0.8
96,276 - MPMX20_00092 0.84 -2.3
96,287 + MPMX20_00092 0.86 -1.5
96,300 + MPMX20_00092 0.88 -0.8
96,406 - -0.1
96,446 + +0.1
96,479 - -2.7
96,561 - MPMX20_00093 0.16 -1.7
96,573 + MPMX20_00093 0.18 -1.2
96,573 + MPMX20_00093 0.18 -1.1
96,573 + MPMX20_00093 0.18 +1.5
96,573 + MPMX20_00093 0.18 -0.7
96,573 + MPMX20_00093 0.18 -0.7
96,573 + MPMX20_00093 0.18 -0.1
96,573 + MPMX20_00093 0.18 -2.1
96,573 + MPMX20_00093 0.18 -1.7
96,573 + MPMX20_00093 0.18 -1.0
96,573 + MPMX20_00093 0.18 +0.9
96,573 + MPMX20_00093 0.18 -1.2
96,581 - MPMX20_00093 0.19 -1.4
96,581 - MPMX20_00093 0.19 -1.9
96,581 - MPMX20_00093 0.19 -4.2
96,581 - MPMX20_00093 0.19 -0.7
96,581 - MPMX20_00093 0.19 -2.4
96,581 - MPMX20_00093 0.19 -1.4
96,581 - MPMX20_00093 0.19 -2.3
96,581 - MPMX20_00093 0.19 -2.0
96,581 - MPMX20_00093 0.19 -2.4
96,581 - MPMX20_00093 0.19 -0.7
96,581 - MPMX20_00093 0.19 +0.3
96,581 - MPMX20_00093 0.19 +1.9
96,581 - MPMX20_00093 0.19 -1.1
96,581 - MPMX20_00093 0.19 -1.1
96,627 + MPMX20_00093 0.26 +0.6
96,633 - MPMX20_00093 0.27 -1.1
96,723 + MPMX20_00093 0.41 +0.9
96,726 - MPMX20_00093 0.42 -2.1
96,738 + MPMX20_00093 0.44 -1.0
96,741 - MPMX20_00093 0.44 -0.1
96,751 - MPMX20_00093 0.46 -0.1
96,767 - MPMX20_00093 0.48 -1.4
96,810 - MPMX20_00093 0.55 +0.9
96,810 - MPMX20_00093 0.55 +2.2
96,830 - MPMX20_00093 0.58 -0.1
96,887 + MPMX20_00093 0.67 -1.1
96,895 - MPMX20_00093 0.68 -1.9
96,895 - MPMX20_00093 0.68 -2.4
96,980 + MPMX20_00093 0.81 -0.7
96,980 + MPMX20_00093 0.81 -0.1
96,988 - MPMX20_00093 0.83 -2.4
97,115 + +0.2
97,151 + -0.4
97,218 - MPMX20_00094 0.13 +1.1
97,233 - MPMX20_00094 0.16 +0.3
97,266 + MPMX20_00094 0.21 +0.6
97,287 - MPMX20_00094 0.25 -0.4
97,319 + MPMX20_00094 0.30 -0.4
97,325 - MPMX20_00094 0.31 -0.7
97,334 + MPMX20_00094 0.33 -0.8
97,356 + MPMX20_00094 0.37 -0.1
97,356 + MPMX20_00094 0.37 +0.2
97,356 + MPMX20_00094 0.37 -0.4
97,364 - MPMX20_00094 0.38 +0.3
97,364 - MPMX20_00094 0.38 -0.7
97,364 - MPMX20_00094 0.38 -0.2
97,390 + MPMX20_00094 0.42 -0.4
97,403 - MPMX20_00094 0.44 +0.3
97,410 + MPMX20_00094 0.46 -0.4
97,418 - MPMX20_00094 0.47 +0.9
97,432 + MPMX20_00094 0.49 -0.2
97,447 - MPMX20_00094 0.52 -0.3
97,626 + MPMX20_00094 0.82 -0.4
97,629 + MPMX20_00094 0.82 -0.5
97,634 - MPMX20_00094 0.83 -0.6
97,713 - -0.5
97,802 - -0.3
97,848 - +0.9

Or see this region's nucleotide sequence