Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016900

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_016895 and TX73_016900 are separated by 465 nucleotidesTX73_016900 and TX73_016905 are separated by 55 nucleotides TX73_016895: TX73_016895 - DNA-directed RNA polymerase subunit beta, at 3,683,018 to 3,687,142 _016895 TX73_016900: TX73_016900 - 50S ribosomal protein L7/L12, at 3,687,608 to 3,687,985 _016900 TX73_016905: TX73_016905 - 50S ribosomal protein L10, at 3,688,041 to 3,688,559 _016905 Position (kb) 3687 3688Strain fitness (log2 ratio) -2 -1 0 1 2at 3687.186 kb on - strandat 3687.221 kb on - strandat 3687.380 kb on - strandat 3687.389 kb on + strandat 3687.399 kb on - strandat 3687.423 kb on - strandat 3687.437 kb on - strandat 3687.452 kb on - strandat 3687.502 kb on + strandat 3687.504 kb on + strandat 3687.504 kb on + strandat 3687.510 kb on - strandat 3687.537 kb on + strandat 3687.537 kb on + strandat 3687.541 kb on + strandat 3687.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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3,687,186 - -0.8
3,687,221 - -1.4
3,687,380 - -0.6
3,687,389 + -1.1
3,687,399 - +0.2
3,687,423 - -1.8
3,687,437 - -1.6
3,687,452 - -0.9
3,687,502 + -0.5
3,687,504 + -0.6
3,687,504 + -0.5
3,687,510 - +0.9
3,687,537 + +1.1
3,687,537 + -1.3
3,687,541 + +2.0
3,687,545 - +0.1

Or see this region's nucleotide sequence