Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004805

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004800 and TX73_004805 are separated by 115 nucleotidesTX73_004805 and TX73_004810 are separated by 3 nucleotides TX73_004800: TX73_004800 - UbiD family decarboxylase, at 1,030,592 to 1,032,130 _004800 TX73_004805: TX73_004805 - SCP2 sterol-binding domain-containing protein, at 1,032,246 to 1,032,791 _004805 TX73_004810: TX73_004810 - U32 family peptidase, at 1,032,795 to 1,033,772 _004810 Position (kb) 1032 1033Strain fitness (log2 ratio) -2 -1 0 1at 1032.122 kb on + strandat 1032.122 kb on + strandat 1032.127 kb on + strandat 1032.131 kb on + strandat 1032.132 kb on + strandat 1032.132 kb on + strandat 1032.134 kb on - strandat 1032.139 kb on + strandat 1032.147 kb on + strandat 1032.148 kb on - strandat 1032.149 kb on + strandat 1032.149 kb on + strandat 1032.152 kb on - strandat 1032.154 kb on + strandat 1032.177 kb on + strandat 1032.177 kb on + strandat 1032.185 kb on - strandat 1032.185 kb on - strandat 1032.227 kb on + strandat 1032.765 kb on + strandat 1032.765 kb on + strandat 1032.786 kb on + strandat 1032.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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1,032,122 + +1.1
1,032,122 + +0.7
1,032,127 + -0.8
1,032,131 + +0.2
1,032,132 + -0.2
1,032,132 + -0.3
1,032,134 - -2.1
1,032,139 + +0.0
1,032,147 + -0.3
1,032,148 - +1.0
1,032,149 + -1.2
1,032,149 + -1.0
1,032,152 - +0.8
1,032,154 + +0.2
1,032,177 + -0.3
1,032,177 + +1.1
1,032,185 - +0.3
1,032,185 - +0.7
1,032,227 + -0.5
1,032,765 + -1.5
1,032,765 + +0.4
1,032,786 + -1.1
1,032,786 + -1.7

Or see this region's nucleotide sequence