Experiment: LB agar plate coculture with Mixed culture; Streptomyces ambofaciens SAI_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04095 and MPMX20_04096 are separated by 50 nucleotides MPMX20_04096 and MPMX20_04097 are separated by 126 nucleotides MPMX20_04097 and MPMX20_04098 overlap by 1 nucleotides MPMX20_04098 and MPMX20_04099 are separated by 18 nucleotides
MPMX20_04095: MPMX20_04095 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,291,389 to 4,292,648
_04095
MPMX20_04096: MPMX20_04096 - Acid stress protein IbaG, at 4,292,699 to 4,292,953
_04096
MPMX20_04097: MPMX20_04097 - Intermembrane phospholipid transport system binding protein MlaB, at 4,293,080 to 4,293,373
_04097
MPMX20_04098: MPMX20_04098 - Intermembrane phospholipid transport system binding protein MlaC, at 4,293,373 to 4,294,008
_04098
MPMX20_04099: MPMX20_04099 - Intermembrane phospholipid transport system binding protein MlaD, at 4,294,027 to 4,294,575
_04099
Position (kb) 4293
4294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4292.740 kb on - strand, within MPMX20_04096 at 4292.740 kb on - strand, within MPMX20_04096 at 4292.740 kb on - strand, within MPMX20_04096 at 4292.740 kb on - strand, within MPMX20_04096 at 4292.742 kb on - strand, within MPMX20_04096 at 4292.770 kb on - strand, within MPMX20_04096 at 4292.809 kb on - strand, within MPMX20_04096 at 4292.839 kb on - strand, within MPMX20_04096 at 4292.839 kb on - strand, within MPMX20_04096 at 4292.839 kb on - strand, within MPMX20_04096 at 4292.873 kb on - strand, within MPMX20_04096 at 4292.873 kb on - strand, within MPMX20_04096 at 4292.899 kb on - strand, within MPMX20_04096 at 4292.929 kb on - strand at 4293.116 kb on - strand, within MPMX20_04097 at 4293.126 kb on - strand, within MPMX20_04097 at 4293.126 kb on - strand, within MPMX20_04097 at 4293.149 kb on + strand, within MPMX20_04097 at 4293.154 kb on + strand, within MPMX20_04097 at 4293.154 kb on + strand, within MPMX20_04097 at 4293.162 kb on - strand, within MPMX20_04097 at 4293.168 kb on - strand, within MPMX20_04097 at 4293.180 kb on - strand, within MPMX20_04097 at 4293.186 kb on + strand, within MPMX20_04097 at 4293.312 kb on - strand, within MPMX20_04097 at 4293.346 kb on + strand at 4293.364 kb on - strand at 4293.458 kb on + strand, within MPMX20_04098 at 4293.477 kb on + strand, within MPMX20_04098 at 4293.477 kb on + strand, within MPMX20_04098 at 4293.477 kb on + strand, within MPMX20_04098 at 4293.485 kb on - strand, within MPMX20_04098 at 4293.562 kb on + strand, within MPMX20_04098 at 4293.584 kb on - strand, within MPMX20_04098 at 4293.610 kb on + strand, within MPMX20_04098 at 4293.668 kb on + strand, within MPMX20_04098 at 4293.668 kb on + strand, within MPMX20_04098 at 4293.676 kb on - strand, within MPMX20_04098 at 4293.744 kb on + strand, within MPMX20_04098 at 4293.780 kb on - strand, within MPMX20_04098 at 4293.817 kb on - strand, within MPMX20_04098 at 4293.819 kb on + strand, within MPMX20_04098 at 4293.916 kb on - strand, within MPMX20_04098 at 4293.923 kb on + strand, within MPMX20_04098 at 4293.947 kb on - strand at 4293.959 kb on - strand at 4293.976 kb on - strand at 4294.068 kb on - strand at 4294.077 kb on + strand at 4294.117 kb on - strand, within MPMX20_04099 at 4294.117 kb on - strand, within MPMX20_04099 at 4294.144 kb on + strand, within MPMX20_04099 at 4294.173 kb on + strand, within MPMX20_04099 at 4294.187 kb on + strand, within MPMX20_04099 at 4294.194 kb on + strand, within MPMX20_04099 at 4294.218 kb on - strand, within MPMX20_04099 at 4294.330 kb on - strand, within MPMX20_04099
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Streptomyces ambofaciens SAI_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 4,292,740 - MPMX20_04096 0.16 -0.5 4,292,740 - MPMX20_04096 0.16 -0.2 4,292,740 - MPMX20_04096 0.16 +1.8 4,292,740 - MPMX20_04096 0.16 +0.8 4,292,742 - MPMX20_04096 0.17 -0.2 4,292,770 - MPMX20_04096 0.28 -2.9 4,292,809 - MPMX20_04096 0.43 +1.3 4,292,839 - MPMX20_04096 0.55 +2.6 4,292,839 - MPMX20_04096 0.55 -0.9 4,292,839 - MPMX20_04096 0.55 +1.9 4,292,873 - MPMX20_04096 0.68 -0.2 4,292,873 - MPMX20_04096 0.68 -2.2 4,292,899 - MPMX20_04096 0.78 -0.5 4,292,929 - +0.4 4,293,116 - MPMX20_04097 0.12 +0.1 4,293,126 - MPMX20_04097 0.16 -2.3 4,293,126 - MPMX20_04097 0.16 -0.8 4,293,149 + MPMX20_04097 0.23 +0.0 4,293,154 + MPMX20_04097 0.25 -0.1 4,293,154 + MPMX20_04097 0.25 +0.4 4,293,162 - MPMX20_04097 0.28 -2.2 4,293,168 - MPMX20_04097 0.30 +1.4 4,293,180 - MPMX20_04097 0.34 +2.3 4,293,186 + MPMX20_04097 0.36 -0.2 4,293,312 - MPMX20_04097 0.79 +0.8 4,293,346 + -0.0 4,293,364 - +0.1 4,293,458 + MPMX20_04098 0.13 +0.9 4,293,477 + MPMX20_04098 0.16 -0.4 4,293,477 + MPMX20_04098 0.16 -1.0 4,293,477 + MPMX20_04098 0.16 -1.0 4,293,485 - MPMX20_04098 0.18 -1.0 4,293,562 + MPMX20_04098 0.30 -1.5 4,293,584 - MPMX20_04098 0.33 -1.1 4,293,610 + MPMX20_04098 0.37 -2.0 4,293,668 + MPMX20_04098 0.46 -0.2 4,293,668 + MPMX20_04098 0.46 -1.8 4,293,676 - MPMX20_04098 0.48 +0.2 4,293,744 + MPMX20_04098 0.58 +0.5 4,293,780 - MPMX20_04098 0.64 +0.3 4,293,817 - MPMX20_04098 0.70 +0.6 4,293,819 + MPMX20_04098 0.70 -2.9 4,293,916 - MPMX20_04098 0.85 -2.3 4,293,923 + MPMX20_04098 0.86 -0.7 4,293,947 - -3.0 4,293,959 - -0.2 4,293,976 - -0.4 4,294,068 - +0.4 4,294,077 + +1.2 4,294,117 - MPMX20_04099 0.16 -1.8 4,294,117 - MPMX20_04099 0.16 -1.2 4,294,144 + MPMX20_04099 0.21 -0.4 4,294,173 + MPMX20_04099 0.27 -2.2 4,294,187 + MPMX20_04099 0.29 -2.7 4,294,194 + MPMX20_04099 0.30 -2.1 4,294,218 - MPMX20_04099 0.35 -1.1 4,294,330 - MPMX20_04099 0.55 +0.1
Or see this region's nucleotide sequence