Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023405

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_023400 and TX73_023405 are separated by 245 nucleotidesTX73_023405 and TX73_023410 are separated by 584 nucleotidesTX73_023410 and TX73_023415 overlap by 4 nucleotides TX73_023400: TX73_023400 - radical SAM protein, at 5,085,774 to 5,087,549 _023400 TX73_023405: TX73_023405 - hypothetical protein, at 5,087,795 to 5,088,037 _023405 TX73_023410: TX73_023410 - DUF1850 domain-containing protein, at 5,088,622 to 5,088,993 _023410 TX73_023415: TX73_023415 - TRAP transporter permease, at 5,088,990 to 5,091,110 _023415 Position (kb) 5087 5088 5089Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5086.808 kb on - strand, within TX73_023400at 5086.866 kb on + strand, within TX73_023400at 5086.930 kb on - strand, within TX73_023400at 5086.938 kb on - strand, within TX73_023400at 5086.968 kb on + strand, within TX73_023400at 5086.996 kb on + strand, within TX73_023400at 5087.004 kb on - strand, within TX73_023400at 5087.029 kb on + strand, within TX73_023400at 5087.052 kb on + strand, within TX73_023400at 5087.060 kb on + strand, within TX73_023400at 5087.073 kb on - strand, within TX73_023400at 5087.088 kb on - strand, within TX73_023400at 5087.132 kb on - strand, within TX73_023400at 5087.216 kb on - strand, within TX73_023400at 5087.261 kb on - strand, within TX73_023400at 5087.268 kb on - strand, within TX73_023400at 5087.277 kb on - strand, within TX73_023400at 5087.424 kb on - strandat 5087.463 kb on + strandat 5087.468 kb on + strandat 5087.470 kb on + strandat 5087.478 kb on - strandat 5087.539 kb on + strandat 5087.563 kb on + strandat 5087.590 kb on - strandat 5087.590 kb on - strandat 5087.590 kb on - strandat 5087.590 kb on - strandat 5087.608 kb on - strandat 5087.613 kb on + strandat 5087.622 kb on + strandat 5087.623 kb on - strandat 5087.643 kb on + strandat 5087.689 kb on + strandat 5087.694 kb on - strandat 5087.727 kb on - strandat 5087.732 kb on + strandat 5087.742 kb on - strandat 5087.760 kb on - strandat 5087.770 kb on - strandat 5087.783 kb on + strandat 5087.791 kb on - strandat 5087.814 kb on - strandat 5087.815 kb on + strandat 5087.815 kb on + strandat 5087.836 kb on - strand, within TX73_023405at 5087.871 kb on + strand, within TX73_023405at 5087.886 kb on + strand, within TX73_023405at 5087.886 kb on + strand, within TX73_023405at 5087.894 kb on - strand, within TX73_023405at 5087.897 kb on - strand, within TX73_023405at 5087.927 kb on - strand, within TX73_023405at 5087.948 kb on + strand, within TX73_023405at 5087.948 kb on + strand, within TX73_023405at 5088.116 kb on + strandat 5088.420 kb on + strandat 5088.428 kb on - strandat 5088.443 kb on + strandat 5088.625 kb on + strandat 5088.656 kb on - strandat 5088.657 kb on - strandat 5088.667 kb on + strand, within TX73_023410at 5088.675 kb on - strand, within TX73_023410at 5088.680 kb on - strand, within TX73_023410at 5088.682 kb on - strand, within TX73_023410at 5088.686 kb on + strand, within TX73_023410at 5088.694 kb on - strand, within TX73_023410at 5088.694 kb on - strand, within TX73_023410at 5088.742 kb on + strand, within TX73_023410at 5088.796 kb on + strand, within TX73_023410at 5088.809 kb on + strand, within TX73_023410at 5088.814 kb on + strand, within TX73_023410at 5088.838 kb on + strand, within TX73_023410at 5088.856 kb on + strand, within TX73_023410at 5088.876 kb on - strand, within TX73_023410at 5088.890 kb on - strand, within TX73_023410at 5088.931 kb on - strand, within TX73_023410at 5088.931 kb on - strand, within TX73_023410at 5088.933 kb on + strand, within TX73_023410at 5088.987 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
remove
5,086,808 - TX73_023400 0.58 +1.2
5,086,866 + TX73_023400 0.61 -2.0
5,086,930 - TX73_023400 0.65 -1.3
5,086,938 - TX73_023400 0.66 -1.2
5,086,968 + TX73_023400 0.67 +0.4
5,086,996 + TX73_023400 0.69 -1.3
5,087,004 - TX73_023400 0.69 +0.7
5,087,029 + TX73_023400 0.71 -0.3
5,087,052 + TX73_023400 0.72 -1.4
5,087,060 + TX73_023400 0.72 +3.9
5,087,073 - TX73_023400 0.73 -1.7
5,087,088 - TX73_023400 0.74 +0.8
5,087,132 - TX73_023400 0.76 -1.2
5,087,216 - TX73_023400 0.81 -3.1
5,087,261 - TX73_023400 0.84 -2.3
5,087,268 - TX73_023400 0.84 +0.1
5,087,277 - TX73_023400 0.85 -1.8
5,087,424 - +0.6
5,087,463 + +2.5
5,087,468 + -1.6
5,087,470 + -0.8
5,087,478 - -0.6
5,087,539 + -0.1
5,087,563 + -1.4
5,087,590 - +0.9
5,087,590 - +1.1
5,087,590 - +0.4
5,087,590 - +0.2
5,087,608 - -2.4
5,087,613 + +1.2
5,087,622 + +0.1
5,087,623 - -2.9
5,087,643 + -3.4
5,087,689 + +3.7
5,087,694 - -3.2
5,087,727 - +1.8
5,087,732 + +2.0
5,087,742 - -1.7
5,087,760 - -2.1
5,087,770 - -1.4
5,087,783 + +1.9
5,087,791 - +0.7
5,087,814 - +0.9
5,087,815 + +0.9
5,087,815 + +1.3
5,087,836 - TX73_023405 0.17 -2.1
5,087,871 + TX73_023405 0.31 +2.4
5,087,886 + TX73_023405 0.37 -3.8
5,087,886 + TX73_023405 0.37 +0.5
5,087,894 - TX73_023405 0.41 +0.8
5,087,897 - TX73_023405 0.42 +3.3
5,087,927 - TX73_023405 0.54 -1.4
5,087,948 + TX73_023405 0.63 -2.3
5,087,948 + TX73_023405 0.63 -2.0
5,088,116 + -1.9
5,088,420 + +1.8
5,088,428 - +0.4
5,088,443 + +0.4
5,088,625 + +0.9
5,088,656 - -0.4
5,088,657 - -1.7
5,088,667 + TX73_023410 0.12 -3.7
5,088,675 - TX73_023410 0.14 +1.7
5,088,680 - TX73_023410 0.16 +2.4
5,088,682 - TX73_023410 0.16 -2.2
5,088,686 + TX73_023410 0.17 +0.4
5,088,694 - TX73_023410 0.19 -1.1
5,088,694 - TX73_023410 0.19 -0.2
5,088,742 + TX73_023410 0.32 +2.1
5,088,796 + TX73_023410 0.47 -2.0
5,088,809 + TX73_023410 0.50 +1.2
5,088,814 + TX73_023410 0.52 +1.7
5,088,838 + TX73_023410 0.58 -1.3
5,088,856 + TX73_023410 0.63 -1.3
5,088,876 - TX73_023410 0.68 -1.8
5,088,890 - TX73_023410 0.72 +0.5
5,088,931 - TX73_023410 0.83 -0.5
5,088,931 - TX73_023410 0.83 -2.1
5,088,933 + TX73_023410 0.84 +0.4
5,088,987 + -0.7

Or see this region's nucleotide sequence