Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023145

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023130 and TX73_023135 are separated by 13 nucleotidesTX73_023135 and TX73_023140 are separated by 80 nucleotidesTX73_023140 and TX73_023145 are separated by 81 nucleotidesTX73_023145 and TX73_023150 are separated by 23 nucleotidesTX73_023150 and TX73_023155 are separated by 24 nucleotides TX73_023130: TX73_023130 - hypothetical protein, at 5,030,962 to 5,031,480 _023130 TX73_023135: TX73_023135 - cadmium ABC transporter ATPase, at 5,031,494 to 5,031,673 _023135 TX73_023140: TX73_023140 - recombinase RecQ, at 5,031,754 to 5,032,293 _023140 TX73_023145: TX73_023145 - rhodanese-like domain-containing protein, at 5,032,375 to 5,032,764 _023145 TX73_023150: TX73_023150 - isoprenylcysteine carboxylmethyltransferase family protein, at 5,032,788 to 5,033,264 _023150 TX73_023155: TX73_023155 - NAD(P)/FAD-dependent oxidoreductase, at 5,033,289 to 5,034,581 _023155 Position (kb) 5032 5033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5031.379 kb on + strand, within TX73_023130at 5031.387 kb on - strand, within TX73_023130at 5031.411 kb on + strand, within TX73_023130at 5031.426 kb on + strand, within TX73_023130at 5031.478 kb on - strandat 5031.538 kb on + strand, within TX73_023135at 5031.552 kb on - strand, within TX73_023135at 5031.569 kb on - strand, within TX73_023135at 5031.569 kb on - strand, within TX73_023135at 5031.578 kb on - strand, within TX73_023135at 5031.588 kb on + strand, within TX73_023135at 5031.588 kb on - strand, within TX73_023135at 5031.626 kb on - strand, within TX73_023135at 5031.676 kb on + strandat 5031.684 kb on - strandat 5031.696 kb on + strandat 5031.697 kb on + strandat 5031.697 kb on + strandat 5031.697 kb on + strandat 5031.710 kb on - strandat 5031.710 kb on - strandat 5031.737 kb on + strandat 5031.741 kb on - strandat 5031.745 kb on + strandat 5031.812 kb on - strand, within TX73_023140at 5031.877 kb on + strand, within TX73_023140at 5031.879 kb on + strand, within TX73_023140at 5031.880 kb on - strand, within TX73_023140at 5031.885 kb on - strand, within TX73_023140at 5031.887 kb on + strand, within TX73_023140at 5031.890 kb on - strand, within TX73_023140at 5031.900 kb on + strand, within TX73_023140at 5031.900 kb on + strand, within TX73_023140at 5031.948 kb on + strand, within TX73_023140at 5031.998 kb on + strand, within TX73_023140at 5032.011 kb on + strand, within TX73_023140at 5032.012 kb on + strand, within TX73_023140at 5032.041 kb on - strand, within TX73_023140at 5032.043 kb on - strand, within TX73_023140at 5032.068 kb on - strand, within TX73_023140at 5032.079 kb on - strand, within TX73_023140at 5032.088 kb on - strand, within TX73_023140at 5032.179 kb on + strand, within TX73_023140at 5032.203 kb on + strand, within TX73_023140at 5032.227 kb on + strand, within TX73_023140at 5032.232 kb on + strand, within TX73_023140at 5032.235 kb on - strand, within TX73_023140at 5032.240 kb on + strandat 5032.334 kb on + strandat 5032.421 kb on + strand, within TX73_023145at 5032.471 kb on + strand, within TX73_023145at 5032.471 kb on + strand, within TX73_023145at 5032.471 kb on + strand, within TX73_023145at 5032.481 kb on + strand, within TX73_023145at 5032.486 kb on + strand, within TX73_023145at 5032.514 kb on - strand, within TX73_023145at 5032.545 kb on + strand, within TX73_023145at 5032.612 kb on - strand, within TX73_023145at 5032.614 kb on - strand, within TX73_023145at 5032.649 kb on - strand, within TX73_023145at 5032.687 kb on + strand, within TX73_023145at 5032.687 kb on - strand, within TX73_023145at 5032.693 kb on - strand, within TX73_023145at 5032.747 kb on - strandat 5032.757 kb on - strandat 5032.771 kb on + strandat 5032.772 kb on - strandat 5032.865 kb on - strand, within TX73_023150at 5032.905 kb on + strand, within TX73_023150at 5032.919 kb on + strand, within TX73_023150at 5032.937 kb on - strand, within TX73_023150at 5032.977 kb on - strand, within TX73_023150at 5033.017 kb on - strand, within TX73_023150at 5033.017 kb on - strand, within TX73_023150at 5033.073 kb on + strand, within TX73_023150at 5033.088 kb on + strand, within TX73_023150at 5033.088 kb on + strand, within TX73_023150at 5033.098 kb on + strand, within TX73_023150at 5033.205 kb on + strand, within TX73_023150at 5033.348 kb on - strandat 5033.383 kb on + strandat 5033.436 kb on + strand, within TX73_023155at 5033.483 kb on - strand, within TX73_023155at 5033.542 kb on + strand, within TX73_023155at 5033.550 kb on - strand, within TX73_023155at 5033.692 kb on - strand, within TX73_023155at 5033.736 kb on - strand, within TX73_023155at 5033.736 kb on - strand, within TX73_023155at 5033.741 kb on - strand, within TX73_023155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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5,031,379 + TX73_023130 0.80 -1.5
5,031,387 - TX73_023130 0.82 +1.0
5,031,411 + TX73_023130 0.87 +0.8
5,031,426 + TX73_023130 0.89 +1.5
5,031,478 - -2.1
5,031,538 + TX73_023135 0.24 +0.8
5,031,552 - TX73_023135 0.32 -1.0
5,031,569 - TX73_023135 0.42 +1.1
5,031,569 - TX73_023135 0.42 -1.4
5,031,578 - TX73_023135 0.47 -1.6
5,031,588 + TX73_023135 0.52 +1.0
5,031,588 - TX73_023135 0.52 -2.3
5,031,626 - TX73_023135 0.73 +1.0
5,031,676 + +1.0
5,031,684 - +0.7
5,031,696 + +1.2
5,031,697 + +0.4
5,031,697 + -0.9
5,031,697 + +0.6
5,031,710 - -0.5
5,031,710 - -1.9
5,031,737 + +0.8
5,031,741 - +0.4
5,031,745 + +1.4
5,031,812 - TX73_023140 0.11 -1.2
5,031,877 + TX73_023140 0.23 +0.9
5,031,879 + TX73_023140 0.23 -1.6
5,031,880 - TX73_023140 0.23 -1.9
5,031,885 - TX73_023140 0.24 -1.4
5,031,887 + TX73_023140 0.25 +0.3
5,031,890 - TX73_023140 0.25 -1.5
5,031,900 + TX73_023140 0.27 +2.3
5,031,900 + TX73_023140 0.27 -1.6
5,031,948 + TX73_023140 0.36 -0.8
5,031,998 + TX73_023140 0.45 +1.0
5,032,011 + TX73_023140 0.48 -1.2
5,032,012 + TX73_023140 0.48 +0.1
5,032,041 - TX73_023140 0.53 -0.8
5,032,043 - TX73_023140 0.54 -0.4
5,032,068 - TX73_023140 0.58 -1.4
5,032,079 - TX73_023140 0.60 +3.4
5,032,088 - TX73_023140 0.62 +0.2
5,032,179 + TX73_023140 0.79 -3.9
5,032,203 + TX73_023140 0.83 +2.2
5,032,227 + TX73_023140 0.88 -1.2
5,032,232 + TX73_023140 0.89 +0.5
5,032,235 - TX73_023140 0.89 -3.0
5,032,240 + -1.4
5,032,334 + -0.4
5,032,421 + TX73_023145 0.12 -0.4
5,032,471 + TX73_023145 0.25 +3.3
5,032,471 + TX73_023145 0.25 -1.2
5,032,471 + TX73_023145 0.25 -2.3
5,032,481 + TX73_023145 0.27 -1.4
5,032,486 + TX73_023145 0.28 +0.7
5,032,514 - TX73_023145 0.36 +2.6
5,032,545 + TX73_023145 0.44 -1.6
5,032,612 - TX73_023145 0.61 +0.5
5,032,614 - TX73_023145 0.61 -1.7
5,032,649 - TX73_023145 0.70 +1.0
5,032,687 + TX73_023145 0.80 +2.9
5,032,687 - TX73_023145 0.80 +0.7
5,032,693 - TX73_023145 0.82 -1.7
5,032,747 - +1.7
5,032,757 - +1.6
5,032,771 + -2.5
5,032,772 - -1.8
5,032,865 - TX73_023150 0.16 -0.7
5,032,905 + TX73_023150 0.25 -0.5
5,032,919 + TX73_023150 0.27 +1.8
5,032,937 - TX73_023150 0.31 -1.5
5,032,977 - TX73_023150 0.40 -1.0
5,033,017 - TX73_023150 0.48 -2.3
5,033,017 - TX73_023150 0.48 -0.0
5,033,073 + TX73_023150 0.60 -1.7
5,033,088 + TX73_023150 0.63 +1.5
5,033,088 + TX73_023150 0.63 +1.6
5,033,098 + TX73_023150 0.65 +2.0
5,033,205 + TX73_023150 0.87 -2.8
5,033,348 - -2.5
5,033,383 + +0.3
5,033,436 + TX73_023155 0.11 +1.8
5,033,483 - TX73_023155 0.15 +1.0
5,033,542 + TX73_023155 0.20 -1.1
5,033,550 - TX73_023155 0.20 +1.0
5,033,692 - TX73_023155 0.31 +0.3
5,033,736 - TX73_023155 0.35 -2.1
5,033,736 - TX73_023155 0.35 +0.8
5,033,741 - TX73_023155 0.35 +0.5

Or see this region's nucleotide sequence