Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023085

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023070 and TX73_023075 are separated by 90 nucleotidesTX73_023075 and TX73_023080 overlap by 4 nucleotidesTX73_023080 and TX73_023085 overlap by 4 nucleotidesTX73_023085 and TX73_023090 are separated by 4 nucleotidesTX73_023090 and TX73_023095 are separated by 536 nucleotides TX73_023070: TX73_023070 - cysteine rich repeat-containing protein, at 5,019,978 to 5,020,265 _023070 TX73_023075: TX73_023075 - periplasmic heavy metal sensor, at 5,020,356 to 5,020,799 _023075 TX73_023080: TX73_023080 - hypothetical protein, at 5,020,796 to 5,021,215 _023080 TX73_023085: TX73_023085 - RNA polymerase sigma factor, at 5,021,212 to 5,021,838 _023085 TX73_023090: TX73_023090 - hypothetical protein, at 5,021,843 to 5,022,193 _023090 TX73_023095: TX73_023095 - cache domain-containing protein, at 5,022,730 to 5,024,421 _023095 Position (kb) 5021 5022Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5020.258 kb on + strandat 5020.324 kb on + strandat 5020.331 kb on - strandat 5020.814 kb on - strandat 5020.844 kb on - strand, within TX73_023080at 5020.957 kb on - strand, within TX73_023080at 5020.995 kb on - strand, within TX73_023080at 5021.011 kb on + strand, within TX73_023080at 5021.019 kb on - strand, within TX73_023080at 5021.273 kb on + strandat 5021.281 kb on - strand, within TX73_023085at 5021.295 kb on + strand, within TX73_023085at 5021.308 kb on - strand, within TX73_023085at 5021.340 kb on + strand, within TX73_023085at 5021.346 kb on + strand, within TX73_023085at 5021.346 kb on - strand, within TX73_023085at 5021.348 kb on + strand, within TX73_023085at 5021.429 kb on - strand, within TX73_023085at 5021.431 kb on + strand, within TX73_023085at 5021.431 kb on + strand, within TX73_023085at 5021.431 kb on + strand, within TX73_023085at 5021.437 kb on + strand, within TX73_023085at 5021.439 kb on - strand, within TX73_023085at 5021.439 kb on - strand, within TX73_023085at 5021.439 kb on - strand, within TX73_023085at 5021.446 kb on - strand, within TX73_023085at 5021.456 kb on - strand, within TX73_023085at 5021.467 kb on - strand, within TX73_023085at 5021.535 kb on - strand, within TX73_023085at 5021.535 kb on - strand, within TX73_023085at 5021.545 kb on - strand, within TX73_023085at 5021.545 kb on - strand, within TX73_023085at 5021.552 kb on + strand, within TX73_023085at 5021.560 kb on - strand, within TX73_023085at 5021.560 kb on - strand, within TX73_023085at 5021.617 kb on - strand, within TX73_023085at 5021.628 kb on + strand, within TX73_023085at 5021.664 kb on - strand, within TX73_023085at 5021.669 kb on - strand, within TX73_023085at 5021.669 kb on - strand, within TX73_023085at 5021.669 kb on - strand, within TX73_023085at 5021.702 kb on - strand, within TX73_023085at 5021.748 kb on - strand, within TX73_023085at 5021.756 kb on - strand, within TX73_023085at 5021.799 kb on - strandat 5021.812 kb on + strandat 5021.816 kb on + strandat 5021.876 kb on - strandat 5021.893 kb on + strand, within TX73_023090at 5021.901 kb on - strand, within TX73_023090at 5021.909 kb on + strand, within TX73_023090at 5021.943 kb on + strand, within TX73_023090at 5021.948 kb on + strand, within TX73_023090at 5021.986 kb on - strand, within TX73_023090at 5022.011 kb on + strand, within TX73_023090at 5022.016 kb on + strand, within TX73_023090at 5022.024 kb on - strand, within TX73_023090at 5022.049 kb on + strand, within TX73_023090at 5022.133 kb on + strand, within TX73_023090at 5022.143 kb on + strand, within TX73_023090at 5022.150 kb on + strand, within TX73_023090at 5022.151 kb on - strand, within TX73_023090at 5022.151 kb on - strand, within TX73_023090at 5022.169 kb on + strandat 5022.169 kb on + strandat 5022.174 kb on + strandat 5022.203 kb on - strandat 5022.281 kb on + strandat 5022.305 kb on - strandat 5022.437 kb on + strandat 5022.514 kb on + strandat 5022.578 kb on + strandat 5022.615 kb on + strandat 5022.691 kb on - strandat 5022.732 kb on - strandat 5022.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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5,020,258 + +0.5
5,020,324 + -1.1
5,020,331 - -1.5
5,020,814 - +1.2
5,020,844 - TX73_023080 0.11 -0.8
5,020,957 - TX73_023080 0.38 -1.3
5,020,995 - TX73_023080 0.47 +1.0
5,021,011 + TX73_023080 0.51 -1.7
5,021,019 - TX73_023080 0.53 +1.0
5,021,273 + +2.5
5,021,281 - TX73_023085 0.11 +2.6
5,021,295 + TX73_023085 0.13 -0.7
5,021,308 - TX73_023085 0.15 -0.1
5,021,340 + TX73_023085 0.20 +2.4
5,021,346 + TX73_023085 0.21 +0.1
5,021,346 - TX73_023085 0.21 +1.8
5,021,348 + TX73_023085 0.22 +1.2
5,021,429 - TX73_023085 0.35 -1.5
5,021,431 + TX73_023085 0.35 -0.4
5,021,431 + TX73_023085 0.35 +2.4
5,021,431 + TX73_023085 0.35 +1.0
5,021,437 + TX73_023085 0.36 +1.6
5,021,439 - TX73_023085 0.36 +0.7
5,021,439 - TX73_023085 0.36 -1.3
5,021,439 - TX73_023085 0.36 +1.1
5,021,446 - TX73_023085 0.37 -1.2
5,021,456 - TX73_023085 0.39 +2.7
5,021,467 - TX73_023085 0.41 +1.0
5,021,535 - TX73_023085 0.52 +1.1
5,021,535 - TX73_023085 0.52 +1.2
5,021,545 - TX73_023085 0.53 +0.4
5,021,545 - TX73_023085 0.53 +0.6
5,021,552 + TX73_023085 0.54 +2.9
5,021,560 - TX73_023085 0.56 +1.0
5,021,560 - TX73_023085 0.56 +0.7
5,021,617 - TX73_023085 0.65 +5.0
5,021,628 + TX73_023085 0.66 +1.7
5,021,664 - TX73_023085 0.72 -1.4
5,021,669 - TX73_023085 0.73 -3.5
5,021,669 - TX73_023085 0.73 +2.3
5,021,669 - TX73_023085 0.73 -1.4
5,021,702 - TX73_023085 0.78 +2.2
5,021,748 - TX73_023085 0.85 +0.4
5,021,756 - TX73_023085 0.87 -1.9
5,021,799 - +0.1
5,021,812 + +0.9
5,021,816 + -0.2
5,021,876 - +5.0
5,021,893 + TX73_023090 0.14 -2.3
5,021,901 - TX73_023090 0.17 -3.1
5,021,909 + TX73_023090 0.19 +0.2
5,021,943 + TX73_023090 0.28 +1.9
5,021,948 + TX73_023090 0.30 +2.8
5,021,986 - TX73_023090 0.41 +1.9
5,022,011 + TX73_023090 0.48 -2.4
5,022,016 + TX73_023090 0.49 +3.0
5,022,024 - TX73_023090 0.52 -1.5
5,022,049 + TX73_023090 0.59 -3.0
5,022,133 + TX73_023090 0.83 +1.0
5,022,143 + TX73_023090 0.85 +1.6
5,022,150 + TX73_023090 0.87 -0.6
5,022,151 - TX73_023090 0.88 +2.9
5,022,151 - TX73_023090 0.88 +2.6
5,022,169 + +1.0
5,022,169 + -1.0
5,022,174 + -1.7
5,022,203 - +1.2
5,022,281 + +3.6
5,022,305 - -1.0
5,022,437 + +1.0
5,022,514 + +2.2
5,022,578 + -0.7
5,022,615 + -0.7
5,022,691 - -0.4
5,022,732 - +0.1
5,022,814 - +4.2

Or see this region's nucleotide sequence