Experiment: L-Lactate (C) with 10 mM Sodium Chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023070 and TX73_023075 are separated by 90 nucleotides TX73_023075 and TX73_023080 overlap by 4 nucleotides TX73_023080 and TX73_023085 overlap by 4 nucleotides TX73_023085 and TX73_023090 are separated by 4 nucleotides TX73_023090 and TX73_023095 are separated by 536 nucleotides
TX73_023070: TX73_023070 - cysteine rich repeat-containing protein, at 5,019,978 to 5,020,265
_023070
TX73_023075: TX73_023075 - periplasmic heavy metal sensor, at 5,020,356 to 5,020,799
_023075
TX73_023080: TX73_023080 - hypothetical protein, at 5,020,796 to 5,021,215
_023080
TX73_023085: TX73_023085 - RNA polymerase sigma factor, at 5,021,212 to 5,021,838
_023085
TX73_023090: TX73_023090 - hypothetical protein, at 5,021,843 to 5,022,193
_023090
TX73_023095: TX73_023095 - cache domain-containing protein, at 5,022,730 to 5,024,421
_023095
Position (kb)
5021
5022 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 5020.258 kb on + strand at 5020.324 kb on + strand at 5020.331 kb on - strand at 5020.814 kb on - strand at 5020.844 kb on - strand, within TX73_023080 at 5020.957 kb on - strand, within TX73_023080 at 5020.995 kb on - strand, within TX73_023080 at 5021.011 kb on + strand, within TX73_023080 at 5021.019 kb on - strand, within TX73_023080 at 5021.273 kb on + strand at 5021.281 kb on - strand, within TX73_023085 at 5021.295 kb on + strand, within TX73_023085 at 5021.308 kb on - strand, within TX73_023085 at 5021.340 kb on + strand, within TX73_023085 at 5021.346 kb on + strand, within TX73_023085 at 5021.346 kb on - strand, within TX73_023085 at 5021.348 kb on + strand, within TX73_023085 at 5021.429 kb on - strand, within TX73_023085 at 5021.431 kb on + strand, within TX73_023085 at 5021.431 kb on + strand, within TX73_023085 at 5021.431 kb on + strand, within TX73_023085 at 5021.437 kb on + strand, within TX73_023085 at 5021.439 kb on - strand, within TX73_023085 at 5021.439 kb on - strand, within TX73_023085 at 5021.439 kb on - strand, within TX73_023085 at 5021.446 kb on - strand, within TX73_023085 at 5021.456 kb on - strand, within TX73_023085 at 5021.467 kb on - strand, within TX73_023085 at 5021.535 kb on - strand, within TX73_023085 at 5021.535 kb on - strand, within TX73_023085 at 5021.545 kb on - strand, within TX73_023085 at 5021.545 kb on - strand, within TX73_023085 at 5021.552 kb on + strand, within TX73_023085 at 5021.560 kb on - strand, within TX73_023085 at 5021.560 kb on - strand, within TX73_023085 at 5021.617 kb on - strand, within TX73_023085 at 5021.628 kb on + strand, within TX73_023085 at 5021.664 kb on - strand, within TX73_023085 at 5021.669 kb on - strand, within TX73_023085 at 5021.669 kb on - strand, within TX73_023085 at 5021.669 kb on - strand, within TX73_023085 at 5021.702 kb on - strand, within TX73_023085 at 5021.748 kb on - strand, within TX73_023085 at 5021.756 kb on - strand, within TX73_023085 at 5021.799 kb on - strand at 5021.812 kb on + strand at 5021.816 kb on + strand at 5021.876 kb on - strand at 5021.893 kb on + strand, within TX73_023090 at 5021.901 kb on - strand, within TX73_023090 at 5021.909 kb on + strand, within TX73_023090 at 5021.943 kb on + strand, within TX73_023090 at 5021.948 kb on + strand, within TX73_023090 at 5021.986 kb on - strand, within TX73_023090 at 5022.011 kb on + strand, within TX73_023090 at 5022.016 kb on + strand, within TX73_023090 at 5022.024 kb on - strand, within TX73_023090 at 5022.049 kb on + strand, within TX73_023090 at 5022.133 kb on + strand, within TX73_023090 at 5022.143 kb on + strand, within TX73_023090 at 5022.150 kb on + strand, within TX73_023090 at 5022.151 kb on - strand, within TX73_023090 at 5022.151 kb on - strand, within TX73_023090 at 5022.169 kb on + strand at 5022.169 kb on + strand at 5022.174 kb on + strand at 5022.203 kb on - strand at 5022.281 kb on + strand at 5022.305 kb on - strand at 5022.437 kb on + strand at 5022.514 kb on + strand at 5022.578 kb on + strand at 5022.615 kb on + strand at 5022.691 kb on - strand at 5022.732 kb on - strand at 5022.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride remove 5,020,258 + +0.5 5,020,324 + -1.1 5,020,331 - -1.5 5,020,814 - +1.2 5,020,844 - TX73_023080 0.11 -0.8 5,020,957 - TX73_023080 0.38 -1.3 5,020,995 - TX73_023080 0.47 +1.0 5,021,011 + TX73_023080 0.51 -1.7 5,021,019 - TX73_023080 0.53 +1.0 5,021,273 + +2.5 5,021,281 - TX73_023085 0.11 +2.6 5,021,295 + TX73_023085 0.13 -0.7 5,021,308 - TX73_023085 0.15 -0.1 5,021,340 + TX73_023085 0.20 +2.4 5,021,346 + TX73_023085 0.21 +0.1 5,021,346 - TX73_023085 0.21 +1.8 5,021,348 + TX73_023085 0.22 +1.2 5,021,429 - TX73_023085 0.35 -1.5 5,021,431 + TX73_023085 0.35 -0.4 5,021,431 + TX73_023085 0.35 +2.4 5,021,431 + TX73_023085 0.35 +1.0 5,021,437 + TX73_023085 0.36 +1.6 5,021,439 - TX73_023085 0.36 +0.7 5,021,439 - TX73_023085 0.36 -1.3 5,021,439 - TX73_023085 0.36 +1.1 5,021,446 - TX73_023085 0.37 -1.2 5,021,456 - TX73_023085 0.39 +2.7 5,021,467 - TX73_023085 0.41 +1.0 5,021,535 - TX73_023085 0.52 +1.1 5,021,535 - TX73_023085 0.52 +1.2 5,021,545 - TX73_023085 0.53 +0.4 5,021,545 - TX73_023085 0.53 +0.6 5,021,552 + TX73_023085 0.54 +2.9 5,021,560 - TX73_023085 0.56 +1.0 5,021,560 - TX73_023085 0.56 +0.7 5,021,617 - TX73_023085 0.65 +5.0 5,021,628 + TX73_023085 0.66 +1.7 5,021,664 - TX73_023085 0.72 -1.4 5,021,669 - TX73_023085 0.73 -3.5 5,021,669 - TX73_023085 0.73 +2.3 5,021,669 - TX73_023085 0.73 -1.4 5,021,702 - TX73_023085 0.78 +2.2 5,021,748 - TX73_023085 0.85 +0.4 5,021,756 - TX73_023085 0.87 -1.9 5,021,799 - +0.1 5,021,812 + +0.9 5,021,816 + -0.2 5,021,876 - +5.0 5,021,893 + TX73_023090 0.14 -2.3 5,021,901 - TX73_023090 0.17 -3.1 5,021,909 + TX73_023090 0.19 +0.2 5,021,943 + TX73_023090 0.28 +1.9 5,021,948 + TX73_023090 0.30 +2.8 5,021,986 - TX73_023090 0.41 +1.9 5,022,011 + TX73_023090 0.48 -2.4 5,022,016 + TX73_023090 0.49 +3.0 5,022,024 - TX73_023090 0.52 -1.5 5,022,049 + TX73_023090 0.59 -3.0 5,022,133 + TX73_023090 0.83 +1.0 5,022,143 + TX73_023090 0.85 +1.6 5,022,150 + TX73_023090 0.87 -0.6 5,022,151 - TX73_023090 0.88 +2.9 5,022,151 - TX73_023090 0.88 +2.6 5,022,169 + +1.0 5,022,169 + -1.0 5,022,174 + -1.7 5,022,203 - +1.2 5,022,281 + +3.6 5,022,305 - -1.0 5,022,437 + +1.0 5,022,514 + +2.2 5,022,578 + -0.7 5,022,615 + -0.7 5,022,691 - -0.4 5,022,732 - +0.1 5,022,814 - +4.2
Or see this region's nucleotide sequence