Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017165

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_017165 and TX73_017170 are separated by 127 nucleotides TX73_017165: TX73_017165 - hypothetical protein, at 3,745,939 to 3,746,520 _017165 TX73_017170: TX73_017170 - phosphomannomutase/phosphoglucomutase, at 3,746,648 to 3,748,144 _017170 Position (kb) 3745 3746 3747Strain fitness (log2 ratio) -3 -2 -1 0 1at 3745.010 kb on + strandat 3745.010 kb on + strandat 3745.013 kb on - strandat 3745.023 kb on - strandat 3745.036 kb on + strandat 3745.036 kb on + strandat 3745.044 kb on - strandat 3745.044 kb on - strandat 3745.065 kb on + strandat 3745.065 kb on + strandat 3745.073 kb on - strandat 3745.194 kb on - strandat 3745.364 kb on - strandat 3745.424 kb on + strandat 3745.583 kb on + strandat 3745.583 kb on - strandat 3745.620 kb on - strandat 3745.642 kb on + strandat 3745.670 kb on - strandat 3745.721 kb on - strandat 3745.929 kb on + strandat 3746.049 kb on + strand, within TX73_017165at 3746.074 kb on + strand, within TX73_017165at 3746.154 kb on + strand, within TX73_017165at 3746.170 kb on - strand, within TX73_017165at 3746.205 kb on - strand, within TX73_017165at 3746.219 kb on + strand, within TX73_017165at 3746.219 kb on + strand, within TX73_017165at 3746.229 kb on + strand, within TX73_017165at 3746.262 kb on + strand, within TX73_017165at 3746.315 kb on + strand, within TX73_017165at 3746.400 kb on + strand, within TX73_017165at 3746.432 kb on + strand, within TX73_017165at 3746.447 kb on - strand, within TX73_017165at 3746.485 kb on + strandat 3746.521 kb on - strandat 3746.575 kb on + strandat 3746.586 kb on - strandat 3746.612 kb on + strandat 3746.626 kb on - strandat 3746.654 kb on - strandat 3746.789 kb on + strandat 3746.794 kb on + strandat 3746.809 kb on + strand, within TX73_017170at 3746.877 kb on + strand, within TX73_017170at 3746.885 kb on - strand, within TX73_017170at 3746.885 kb on - strand, within TX73_017170at 3746.960 kb on + strand, within TX73_017170at 3746.976 kb on + strand, within TX73_017170at 3747.116 kb on + strand, within TX73_017170at 3747.167 kb on - strand, within TX73_017170at 3747.211 kb on + strand, within TX73_017170at 3747.230 kb on - strand, within TX73_017170at 3747.280 kb on + strand, within TX73_017170at 3747.303 kb on + strand, within TX73_017170at 3747.304 kb on + strand, within TX73_017170at 3747.311 kb on - strand, within TX73_017170at 3747.311 kb on - strand, within TX73_017170at 3747.346 kb on - strand, within TX73_017170at 3747.357 kb on - strand, within TX73_017170at 3747.387 kb on + strand, within TX73_017170at 3747.393 kb on + strand, within TX73_017170at 3747.393 kb on + strand, within TX73_017170at 3747.401 kb on + strand, within TX73_017170at 3747.401 kb on + strand, within TX73_017170at 3747.401 kb on - strand, within TX73_017170at 3747.406 kb on + strand, within TX73_017170at 3747.440 kb on - strand, within TX73_017170at 3747.461 kb on - strand, within TX73_017170at 3747.470 kb on + strand, within TX73_017170at 3747.470 kb on + strand, within TX73_017170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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3,745,010 + +0.1
3,745,010 + -0.4
3,745,013 - -1.8
3,745,023 - +1.4
3,745,036 + +1.0
3,745,036 + -1.0
3,745,044 - +0.2
3,745,044 - -1.0
3,745,065 + -0.3
3,745,065 + +0.0
3,745,073 - +0.3
3,745,194 - -0.9
3,745,364 - -0.7
3,745,424 + -0.2
3,745,583 + +0.1
3,745,583 - +0.0
3,745,620 - +1.1
3,745,642 + +0.2
3,745,670 - -0.8
3,745,721 - -0.2
3,745,929 + -1.7
3,746,049 + TX73_017165 0.19 -1.6
3,746,074 + TX73_017165 0.23 -1.4
3,746,154 + TX73_017165 0.37 +0.9
3,746,170 - TX73_017165 0.40 -1.4
3,746,205 - TX73_017165 0.46 +0.1
3,746,219 + TX73_017165 0.48 +0.9
3,746,219 + TX73_017165 0.48 -0.2
3,746,229 + TX73_017165 0.50 -0.9
3,746,262 + TX73_017165 0.55 -1.0
3,746,315 + TX73_017165 0.65 +0.8
3,746,400 + TX73_017165 0.79 +0.4
3,746,432 + TX73_017165 0.85 -0.4
3,746,447 - TX73_017165 0.87 +0.4
3,746,485 + +1.4
3,746,521 - -0.3
3,746,575 + +1.0
3,746,586 - +0.7
3,746,612 + +0.3
3,746,626 - +0.4
3,746,654 - -1.5
3,746,789 + -0.4
3,746,794 + -1.3
3,746,809 + TX73_017170 0.11 -0.9
3,746,877 + TX73_017170 0.15 -0.5
3,746,885 - TX73_017170 0.16 +1.3
3,746,885 - TX73_017170 0.16 -2.4
3,746,960 + TX73_017170 0.21 +0.2
3,746,976 + TX73_017170 0.22 -1.8
3,747,116 + TX73_017170 0.31 -1.8
3,747,167 - TX73_017170 0.35 -0.8
3,747,211 + TX73_017170 0.38 -1.3
3,747,230 - TX73_017170 0.39 -0.8
3,747,280 + TX73_017170 0.42 -0.7
3,747,303 + TX73_017170 0.44 -0.8
3,747,304 + TX73_017170 0.44 +0.4
3,747,311 - TX73_017170 0.44 -1.0
3,747,311 - TX73_017170 0.44 +0.5
3,747,346 - TX73_017170 0.47 -2.6
3,747,357 - TX73_017170 0.47 +0.4
3,747,387 + TX73_017170 0.49 -3.3
3,747,393 + TX73_017170 0.50 -1.9
3,747,393 + TX73_017170 0.50 +0.7
3,747,401 + TX73_017170 0.50 -1.5
3,747,401 + TX73_017170 0.50 -0.7
3,747,401 - TX73_017170 0.50 -0.9
3,747,406 + TX73_017170 0.51 +0.2
3,747,440 - TX73_017170 0.53 +0.8
3,747,461 - TX73_017170 0.54 -1.7
3,747,470 + TX73_017170 0.55 -0.0
3,747,470 + TX73_017170 0.55 -1.7

Or see this region's nucleotide sequence