Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004790

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004775 and TX73_004780 are separated by 97 nucleotidesTX73_004780 and TX73_004785 are separated by 3 nucleotidesTX73_004785 and TX73_004790 overlap by 6 nucleotidesTX73_004790 and TX73_004795 are separated by 226 nucleotidesTX73_004795 and TX73_004800 overlap by 4 nucleotides TX73_004775: TX73_004775 - hypothetical protein, at 1,028,029 to 1,028,223 _004775 TX73_004780: TX73_004780 - helix-turn-helix transcriptional regulator, at 1,028,321 to 1,028,530 _004780 TX73_004785: TX73_004785 - DUF2975 domain-containing protein, at 1,028,534 to 1,029,109 _004785 TX73_004790: TX73_004790 - hypothetical protein, at 1,029,104 to 1,029,766 _004790 TX73_004795: TX73_004795 - UbiX family flavin prenyltransferase, at 1,029,993 to 1,030,595 _004795 TX73_004800: TX73_004800 - UbiD family decarboxylase, at 1,030,592 to 1,032,130 _004800 Position (kb) 1029 1030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1028.218 kb on + strandat 1028.322 kb on + strandat 1028.566 kb on + strandat 1028.582 kb on - strandat 1028.626 kb on - strand, within TX73_004785at 1028.645 kb on + strand, within TX73_004785at 1028.667 kb on - strand, within TX73_004785at 1028.673 kb on + strand, within TX73_004785at 1028.718 kb on + strand, within TX73_004785at 1028.732 kb on - strand, within TX73_004785at 1028.732 kb on - strand, within TX73_004785at 1028.738 kb on - strand, within TX73_004785at 1028.758 kb on + strand, within TX73_004785at 1028.773 kb on + strand, within TX73_004785at 1028.784 kb on + strand, within TX73_004785at 1028.791 kb on - strand, within TX73_004785at 1028.796 kb on - strand, within TX73_004785at 1028.845 kb on + strand, within TX73_004785at 1028.854 kb on - strand, within TX73_004785at 1028.857 kb on + strand, within TX73_004785at 1028.863 kb on + strand, within TX73_004785at 1028.865 kb on + strand, within TX73_004785at 1028.867 kb on + strand, within TX73_004785at 1028.873 kb on - strand, within TX73_004785at 1028.875 kb on - strand, within TX73_004785at 1028.875 kb on - strand, within TX73_004785at 1028.949 kb on - strand, within TX73_004785at 1028.962 kb on - strand, within TX73_004785at 1028.969 kb on + strand, within TX73_004785at 1028.979 kb on + strand, within TX73_004785at 1028.997 kb on - strand, within TX73_004785at 1028.997 kb on - strand, within TX73_004785at 1029.186 kb on - strand, within TX73_004790at 1029.248 kb on + strand, within TX73_004790at 1029.248 kb on + strand, within TX73_004790at 1029.250 kb on + strand, within TX73_004790at 1029.260 kb on + strand, within TX73_004790at 1029.268 kb on - strand, within TX73_004790at 1029.268 kb on - strand, within TX73_004790at 1029.290 kb on - strand, within TX73_004790at 1029.299 kb on - strand, within TX73_004790at 1029.299 kb on - strand, within TX73_004790at 1029.320 kb on + strand, within TX73_004790at 1029.333 kb on - strand, within TX73_004790at 1029.333 kb on - strand, within TX73_004790at 1029.351 kb on + strand, within TX73_004790at 1029.351 kb on - strand, within TX73_004790at 1029.366 kb on + strand, within TX73_004790at 1029.366 kb on + strand, within TX73_004790at 1029.372 kb on - strand, within TX73_004790at 1029.378 kb on + strand, within TX73_004790at 1029.407 kb on + strand, within TX73_004790at 1029.425 kb on - strand, within TX73_004790at 1029.491 kb on - strand, within TX73_004790at 1029.512 kb on + strand, within TX73_004790at 1029.520 kb on - strand, within TX73_004790at 1029.547 kb on - strand, within TX73_004790at 1029.573 kb on - strand, within TX73_004790at 1029.591 kb on + strand, within TX73_004790at 1029.601 kb on - strand, within TX73_004790at 1029.603 kb on + strand, within TX73_004790at 1029.611 kb on - strand, within TX73_004790at 1029.627 kb on - strand, within TX73_004790at 1029.702 kb on + strandat 1029.702 kb on + strandat 1029.702 kb on + strandat 1029.707 kb on + strandat 1029.710 kb on - strandat 1029.712 kb on + strandat 1029.720 kb on - strandat 1029.720 kb on - strandat 1029.720 kb on - strandat 1029.812 kb on - strandat 1029.821 kb on - strandat 1029.827 kb on - strandat 1029.876 kb on + strandat 1029.924 kb on + strandat 1029.957 kb on + strandat 1029.964 kb on + strandat 1029.972 kb on - strandat 1029.999 kb on - strandat 1030.006 kb on - strandat 1030.611 kb on - strandat 1030.625 kb on - strandat 1030.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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1,028,218 + +3.0
1,028,322 + -0.4
1,028,566 + -1.4
1,028,582 - +0.0
1,028,626 - TX73_004785 0.16 -2.6
1,028,645 + TX73_004785 0.19 -0.4
1,028,667 - TX73_004785 0.23 +1.6
1,028,673 + TX73_004785 0.24 +0.1
1,028,718 + TX73_004785 0.32 -1.0
1,028,732 - TX73_004785 0.34 -0.5
1,028,732 - TX73_004785 0.34 -1.4
1,028,738 - TX73_004785 0.35 -0.5
1,028,758 + TX73_004785 0.39 +3.4
1,028,773 + TX73_004785 0.41 +0.8
1,028,784 + TX73_004785 0.43 -0.2
1,028,791 - TX73_004785 0.45 -1.7
1,028,796 - TX73_004785 0.45 +3.3
1,028,845 + TX73_004785 0.54 -2.3
1,028,854 - TX73_004785 0.56 +0.4
1,028,857 + TX73_004785 0.56 +0.4
1,028,863 + TX73_004785 0.57 +1.4
1,028,865 + TX73_004785 0.57 -2.2
1,028,867 + TX73_004785 0.58 -1.1
1,028,873 - TX73_004785 0.59 +1.5
1,028,875 - TX73_004785 0.59 -1.2
1,028,875 - TX73_004785 0.59 +1.3
1,028,949 - TX73_004785 0.72 +2.6
1,028,962 - TX73_004785 0.74 +0.5
1,028,969 + TX73_004785 0.76 +0.7
1,028,979 + TX73_004785 0.77 -2.4
1,028,997 - TX73_004785 0.80 +3.4
1,028,997 - TX73_004785 0.80 +0.4
1,029,186 - TX73_004790 0.12 -2.8
1,029,248 + TX73_004790 0.22 -1.5
1,029,248 + TX73_004790 0.22 -1.7
1,029,250 + TX73_004790 0.22 -0.8
1,029,260 + TX73_004790 0.24 +0.9
1,029,268 - TX73_004790 0.25 -2.6
1,029,268 - TX73_004790 0.25 -2.2
1,029,290 - TX73_004790 0.28 -1.0
1,029,299 - TX73_004790 0.29 -0.1
1,029,299 - TX73_004790 0.29 -2.3
1,029,320 + TX73_004790 0.33 +0.3
1,029,333 - TX73_004790 0.35 -0.1
1,029,333 - TX73_004790 0.35 -2.0
1,029,351 + TX73_004790 0.37 -1.7
1,029,351 - TX73_004790 0.37 -0.3
1,029,366 + TX73_004790 0.40 +0.1
1,029,366 + TX73_004790 0.40 +1.1
1,029,372 - TX73_004790 0.40 +1.4
1,029,378 + TX73_004790 0.41 +0.7
1,029,407 + TX73_004790 0.46 -0.1
1,029,425 - TX73_004790 0.48 -1.7
1,029,491 - TX73_004790 0.58 +2.8
1,029,512 + TX73_004790 0.62 -0.7
1,029,520 - TX73_004790 0.63 -2.6
1,029,547 - TX73_004790 0.67 -2.4
1,029,573 - TX73_004790 0.71 -0.0
1,029,591 + TX73_004790 0.73 -3.2
1,029,601 - TX73_004790 0.75 +1.6
1,029,603 + TX73_004790 0.75 -0.6
1,029,611 - TX73_004790 0.76 +1.0
1,029,627 - TX73_004790 0.79 -1.2
1,029,702 + +1.6
1,029,702 + -0.3
1,029,702 + -0.4
1,029,707 + -1.7
1,029,710 - +0.6
1,029,712 + -1.3
1,029,720 - +0.4
1,029,720 - -1.8
1,029,720 - -1.1
1,029,812 - +1.2
1,029,821 - +1.1
1,029,827 - +0.8
1,029,876 + -1.1
1,029,924 + +1.3
1,029,957 + -0.8
1,029,964 + +0.6
1,029,972 - -0.2
1,029,999 - +0.2
1,030,006 - -1.3
1,030,611 - -0.3
1,030,625 - -0.3
1,030,650 - -0.1

Or see this region's nucleotide sequence