Experiment: L-Lactate (C) with 10 mM Sodium Chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003195 and TX73_003200 are separated by 19 nucleotides TX73_003200 and TX73_003205 are separated by 40 nucleotides TX73_003205 and TX73_003210 are separated by 148 nucleotides
TX73_003195: TX73_003195 - recombination mediator RecR, at 684,959 to 685,561
_003195
TX73_003200: TX73_003200 - hypothetical protein, at 685,581 to 686,009
_003200
TX73_003205: TX73_003205 - MFS transporter, at 686,050 to 687,348
_003205
TX73_003210: TX73_003210 - DNA recombination protein RmuC, at 687,497 to 688,699
_003210
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 685.054 kb on + strand, within TX73_003195 at 685.095 kb on + strand, within TX73_003195 at 685.132 kb on + strand, within TX73_003195 at 685.209 kb on + strand, within TX73_003195 at 685.370 kb on - strand, within TX73_003195 at 685.417 kb on - strand, within TX73_003195 at 685.422 kb on + strand, within TX73_003195 at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.568 kb on - strand at 685.569 kb on + strand at 685.601 kb on - strand at 685.639 kb on + strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.655 kb on - strand, within TX73_003200 at 685.678 kb on - strand, within TX73_003200 at 685.691 kb on + strand, within TX73_003200 at 685.701 kb on + strand, within TX73_003200 at 685.765 kb on - strand, within TX73_003200 at 685.772 kb on + strand, within TX73_003200 at 685.779 kb on + strand, within TX73_003200 at 685.780 kb on - strand, within TX73_003200 at 685.819 kb on + strand, within TX73_003200 at 685.829 kb on + strand, within TX73_003200 at 685.836 kb on + strand, within TX73_003200 at 685.837 kb on - strand, within TX73_003200 at 685.843 kb on - strand, within TX73_003200 at 685.880 kb on + strand, within TX73_003200 at 685.893 kb on - strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.934 kb on - strand, within TX73_003200 at 685.936 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.965 kb on - strand, within TX73_003200 at 686.020 kb on + strand at 686.030 kb on - strand at 686.045 kb on - strand at 686.056 kb on - strand at 686.089 kb on + strand at 686.117 kb on - strand at 686.144 kb on - strand at 686.144 kb on - strand at 686.178 kb on + strand at 686.225 kb on + strand, within TX73_003205 at 686.228 kb on - strand, within TX73_003205 at 686.230 kb on + strand, within TX73_003205 at 686.252 kb on - strand, within TX73_003205 at 686.254 kb on + strand, within TX73_003205 at 686.372 kb on + strand, within TX73_003205 at 686.407 kb on + strand, within TX73_003205 at 686.407 kb on + strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.439 kb on + strand, within TX73_003205 at 686.441 kb on + strand, within TX73_003205 at 686.444 kb on + strand, within TX73_003205 at 686.452 kb on - strand, within TX73_003205 at 686.485 kb on + strand, within TX73_003205 at 686.485 kb on - strand, within TX73_003205 at 686.487 kb on + strand, within TX73_003205 at 686.562 kb on + strand, within TX73_003205 at 686.562 kb on + strand, within TX73_003205 at 686.602 kb on - strand, within TX73_003205 at 686.604 kb on + strand, within TX73_003205 at 686.607 kb on - strand, within TX73_003205 at 686.622 kb on - strand, within TX73_003205 at 686.662 kb on + strand, within TX73_003205 at 686.662 kb on + strand, within TX73_003205 at 686.670 kb on - strand, within TX73_003205 at 686.672 kb on + strand, within TX73_003205 at 686.733 kb on + strand, within TX73_003205 at 686.744 kb on + strand, within TX73_003205 at 686.744 kb on + strand, within TX73_003205 at 686.752 kb on - strand, within TX73_003205 at 686.765 kb on + strand, within TX73_003205 at 686.770 kb on + strand, within TX73_003205 at 686.790 kb on + strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.801 kb on - strand, within TX73_003205 at 686.808 kb on + strand, within TX73_003205 at 686.809 kb on - strand, within TX73_003205 at 686.837 kb on - strand, within TX73_003205 at 686.846 kb on + strand, within TX73_003205 at 686.881 kb on + strand, within TX73_003205 at 686.911 kb on - strand, within TX73_003205 at 686.916 kb on - strand, within TX73_003205 at 686.947 kb on + strand, within TX73_003205 at 686.947 kb on + strand, within TX73_003205 at 686.948 kb on + strand, within TX73_003205 at 686.963 kb on + strand, within TX73_003205 at 686.985 kb on - strand, within TX73_003205 at 687.001 kb on + strand, within TX73_003205 at 687.009 kb on - strand, within TX73_003205 at 687.058 kb on + strand, within TX73_003205 at 687.069 kb on - strand, within TX73_003205 at 687.069 kb on - strand, within TX73_003205 at 687.074 kb on - strand, within TX73_003205 at 687.096 kb on + strand, within TX73_003205 at 687.104 kb on - strand, within TX73_003205 at 687.136 kb on - strand, within TX73_003205 at 687.138 kb on - strand, within TX73_003205 at 687.148 kb on - strand, within TX73_003205 at 687.152 kb on + strand, within TX73_003205 at 687.160 kb on - strand, within TX73_003205 at 687.194 kb on + strand, within TX73_003205 at 687.202 kb on - strand, within TX73_003205 at 687.202 kb on - strand, within TX73_003205 at 687.218 kb on + strand, within TX73_003205 at 687.264 kb on - strand at 687.274 kb on - strand at 687.274 kb on - strand at 687.278 kb on + strand at 687.307 kb on - strand at 687.330 kb on + strand at 687.337 kb on + strand at 687.371 kb on + strand at 687.374 kb on - strand at 687.414 kb on + strand at 687.414 kb on + strand at 687.431 kb on + strand at 687.431 kb on + strand at 687.431 kb on + strand at 687.503 kb on - strand at 687.503 kb on - strand at 687.542 kb on - strand at 687.549 kb on + strand at 687.549 kb on + strand at 687.554 kb on + strand at 687.557 kb on - strand at 687.577 kb on - strand at 687.620 kb on - strand, within TX73_003210 at 687.624 kb on + strand, within TX73_003210 at 687.624 kb on - strand, within TX73_003210 at 687.625 kb on - strand, within TX73_003210 at 687.632 kb on - strand, within TX73_003210 at 687.660 kb on + strand, within TX73_003210 at 687.665 kb on + strand, within TX73_003210 at 687.695 kb on - strand, within TX73_003210 at 687.707 kb on + strand, within TX73_003210 at 687.708 kb on + strand, within TX73_003210 at 687.715 kb on + strand, within TX73_003210 at 687.748 kb on - strand, within TX73_003210 at 687.756 kb on + strand, within TX73_003210 at 687.771 kb on + strand, within TX73_003210 at 687.774 kb on - strand, within TX73_003210 at 687.779 kb on - strand, within TX73_003210 at 687.807 kb on + strand, within TX73_003210 at 687.815 kb on - strand, within TX73_003210 at 687.842 kb on + strand, within TX73_003210 at 687.859 kb on + strand, within TX73_003210 at 687.863 kb on - strand, within TX73_003210 at 687.868 kb on - strand, within TX73_003210 at 687.878 kb on - strand, within TX73_003210 at 687.902 kb on + strand, within TX73_003210 at 687.935 kb on + strand, within TX73_003210 at 687.953 kb on - strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.980 kb on + strand, within TX73_003210 at 687.987 kb on - strand, within TX73_003210 at 688.008 kb on + strand, within TX73_003210 at 688.021 kb on + strand, within TX73_003210 at 688.026 kb on - strand, within TX73_003210 at 688.029 kb on - strand, within TX73_003210 at 688.045 kb on - strand, within TX73_003210 at 688.071 kb on + strand, within TX73_003210 at 688.079 kb on - strand, within TX73_003210 at 688.152 kb on - strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.189 kb on - strand, within TX73_003210 at 688.208 kb on - strand, within TX73_003210 at 688.217 kb on - strand, within TX73_003210 at 688.232 kb on - strand, within TX73_003210 at 688.233 kb on + strand, within TX73_003210 at 688.233 kb on + strand, within TX73_003210 at 688.241 kb on - strand, within TX73_003210 at 688.272 kb on - strand, within TX73_003210 at 688.290 kb on + strand, within TX73_003210 at 688.290 kb on + strand, within TX73_003210 at 688.309 kb on + strand, within TX73_003210 at 688.327 kb on - strand, within TX73_003210 at 688.330 kb on - strand, within TX73_003210 at 688.341 kb on + strand, within TX73_003210 at 688.344 kb on - strand, within TX73_003210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride remove 685,054 + TX73_003195 0.16 -0.8 685,095 + TX73_003195 0.23 -1.1 685,132 + TX73_003195 0.29 +0.8 685,209 + TX73_003195 0.41 -0.2 685,370 - TX73_003195 0.68 -1.5 685,417 - TX73_003195 0.76 -0.8 685,422 + TX73_003195 0.77 -0.8 685,555 + -0.6 685,555 + +0.1 685,555 + +2.3 685,555 + +1.0 685,555 + +1.3 685,555 + -0.2 685,563 - +2.1 685,563 - +0.9 685,563 - -1.1 685,568 - -0.1 685,569 + +0.6 685,601 - -0.5 685,639 + TX73_003200 0.14 +2.0 685,647 - TX73_003200 0.15 -1.7 685,647 - TX73_003200 0.15 -0.8 685,655 - TX73_003200 0.17 -0.5 685,678 - TX73_003200 0.23 -0.2 685,691 + TX73_003200 0.26 +2.1 685,701 + TX73_003200 0.28 +1.6 685,765 - TX73_003200 0.43 +1.2 685,772 + TX73_003200 0.45 +2.7 685,779 + TX73_003200 0.46 -1.6 685,780 - TX73_003200 0.46 +2.6 685,819 + TX73_003200 0.55 -2.0 685,829 + TX73_003200 0.58 +0.8 685,836 + TX73_003200 0.59 +0.5 685,837 - TX73_003200 0.60 +0.0 685,843 - TX73_003200 0.61 -1.0 685,880 + TX73_003200 0.70 +1.0 685,893 - TX73_003200 0.73 -0.1 685,895 + TX73_003200 0.73 +1.1 685,895 + TX73_003200 0.73 +0.5 685,895 + TX73_003200 0.73 -0.5 685,924 + TX73_003200 0.80 +0.3 685,924 + TX73_003200 0.80 -1.6 685,924 + TX73_003200 0.80 +0.9 685,934 - TX73_003200 0.82 -1.4 685,936 + TX73_003200 0.83 +0.0 685,962 + TX73_003200 0.89 -0.1 685,962 + TX73_003200 0.89 +1.7 685,962 + TX73_003200 0.89 +1.3 685,965 - TX73_003200 0.90 +1.6 686,020 + +0.6 686,030 - +0.1 686,045 - +2.0 686,056 - -1.1 686,089 + -0.9 686,117 - -1.2 686,144 - +1.2 686,144 - -0.9 686,178 + +3.3 686,225 + TX73_003205 0.13 -2.0 686,228 - TX73_003205 0.14 -0.1 686,230 + TX73_003205 0.14 -0.9 686,252 - TX73_003205 0.16 -1.4 686,254 + TX73_003205 0.16 +2.4 686,372 + TX73_003205 0.25 +1.1 686,407 + TX73_003205 0.27 -0.4 686,407 + TX73_003205 0.27 +0.3 686,415 - TX73_003205 0.28 -2.0 686,415 - TX73_003205 0.28 -0.4 686,415 - TX73_003205 0.28 -1.0 686,439 + TX73_003205 0.30 +1.7 686,441 + TX73_003205 0.30 +0.3 686,444 + TX73_003205 0.30 +0.3 686,452 - TX73_003205 0.31 -1.9 686,485 + TX73_003205 0.33 -0.1 686,485 - TX73_003205 0.33 -0.7 686,487 + TX73_003205 0.34 +1.3 686,562 + TX73_003205 0.39 -0.9 686,562 + TX73_003205 0.39 +3.1 686,602 - TX73_003205 0.42 -0.3 686,604 + TX73_003205 0.43 +2.8 686,607 - TX73_003205 0.43 -1.7 686,622 - TX73_003205 0.44 -0.4 686,662 + TX73_003205 0.47 -0.8 686,662 + TX73_003205 0.47 +0.8 686,670 - TX73_003205 0.48 -1.0 686,672 + TX73_003205 0.48 -2.9 686,733 + TX73_003205 0.53 +0.3 686,744 + TX73_003205 0.53 +1.8 686,744 + TX73_003205 0.53 +0.5 686,752 - TX73_003205 0.54 +0.3 686,765 + TX73_003205 0.55 -0.8 686,770 + TX73_003205 0.55 +2.0 686,790 + TX73_003205 0.57 +0.8 686,798 - TX73_003205 0.58 -0.5 686,798 - TX73_003205 0.58 +2.2 686,798 - TX73_003205 0.58 -1.7 686,798 - TX73_003205 0.58 -0.3 686,798 - TX73_003205 0.58 -1.8 686,798 - TX73_003205 0.58 -1.4 686,801 - TX73_003205 0.58 -3.3 686,808 + TX73_003205 0.58 +0.9 686,809 - TX73_003205 0.58 +0.3 686,837 - TX73_003205 0.61 -1.5 686,846 + TX73_003205 0.61 +3.5 686,881 + TX73_003205 0.64 +1.1 686,911 - TX73_003205 0.66 +0.2 686,916 - TX73_003205 0.67 -0.2 686,947 + TX73_003205 0.69 -1.2 686,947 + TX73_003205 0.69 -1.8 686,948 + TX73_003205 0.69 -1.0 686,963 + TX73_003205 0.70 -1.7 686,985 - TX73_003205 0.72 -0.8 687,001 + TX73_003205 0.73 +1.3 687,009 - TX73_003205 0.74 -0.9 687,058 + TX73_003205 0.78 -0.6 687,069 - TX73_003205 0.78 +2.1 687,069 - TX73_003205 0.78 +0.9 687,074 - TX73_003205 0.79 +0.3 687,096 + TX73_003205 0.81 -2.7 687,104 - TX73_003205 0.81 -0.1 687,136 - TX73_003205 0.84 -1.1 687,138 - TX73_003205 0.84 +2.5 687,148 - TX73_003205 0.85 -0.2 687,152 + TX73_003205 0.85 -2.4 687,160 - TX73_003205 0.85 -1.2 687,194 + TX73_003205 0.88 +1.4 687,202 - TX73_003205 0.89 +0.3 687,202 - TX73_003205 0.89 -0.6 687,218 + TX73_003205 0.90 -1.0 687,264 - +1.9 687,274 - +1.5 687,274 - -1.0 687,278 + -1.4 687,307 - +0.4 687,330 + +0.0 687,337 + +1.5 687,371 + -0.2 687,374 - +0.9 687,414 + +0.3 687,414 + -0.9 687,431 + +0.2 687,431 + -2.2 687,431 + -1.0 687,503 - -0.0 687,503 - -1.4 687,542 - -0.1 687,549 + +1.1 687,549 + -1.4 687,554 + +1.2 687,557 - -0.6 687,577 - -2.1 687,620 - TX73_003210 0.10 +4.2 687,624 + TX73_003210 0.11 -1.2 687,624 - TX73_003210 0.11 -0.9 687,625 - TX73_003210 0.11 +0.1 687,632 - TX73_003210 0.11 +0.8 687,660 + TX73_003210 0.14 -0.7 687,665 + TX73_003210 0.14 -0.4 687,695 - TX73_003210 0.16 +0.0 687,707 + TX73_003210 0.17 -0.2 687,708 + TX73_003210 0.18 +0.7 687,715 + TX73_003210 0.18 +1.5 687,748 - TX73_003210 0.21 +1.3 687,756 + TX73_003210 0.22 -0.7 687,771 + TX73_003210 0.23 -1.2 687,774 - TX73_003210 0.23 -0.3 687,779 - TX73_003210 0.23 -0.6 687,807 + TX73_003210 0.26 -1.0 687,815 - TX73_003210 0.26 -1.0 687,842 + TX73_003210 0.29 +1.5 687,859 + TX73_003210 0.30 -1.7 687,863 - TX73_003210 0.30 -0.8 687,868 - TX73_003210 0.31 -2.5 687,878 - TX73_003210 0.32 +1.6 687,902 + TX73_003210 0.34 -0.7 687,935 + TX73_003210 0.36 +1.4 687,953 - TX73_003210 0.38 +1.0 687,962 + TX73_003210 0.39 -0.3 687,962 + TX73_003210 0.39 +2.1 687,962 + TX73_003210 0.39 -3.7 687,962 + TX73_003210 0.39 -0.0 687,962 + TX73_003210 0.39 -2.6 687,970 - TX73_003210 0.39 -2.0 687,970 - TX73_003210 0.39 -1.7 687,970 - TX73_003210 0.39 -0.1 687,970 - TX73_003210 0.39 -1.7 687,980 + TX73_003210 0.40 -2.5 687,987 - TX73_003210 0.41 -0.6 688,008 + TX73_003210 0.42 +2.0 688,021 + TX73_003210 0.44 +0.4 688,026 - TX73_003210 0.44 +0.3 688,029 - TX73_003210 0.44 +1.2 688,045 - TX73_003210 0.46 -2.9 688,071 + TX73_003210 0.48 -2.2 688,079 - TX73_003210 0.48 +2.4 688,152 - TX73_003210 0.54 +0.9 688,179 + TX73_003210 0.57 -0.1 688,179 + TX73_003210 0.57 -1.3 688,179 + TX73_003210 0.57 +1.3 688,179 + TX73_003210 0.57 +0.7 688,189 - TX73_003210 0.58 +0.4 688,208 - TX73_003210 0.59 -1.4 688,217 - TX73_003210 0.60 -1.1 688,232 - TX73_003210 0.61 -0.9 688,233 + TX73_003210 0.61 +0.7 688,233 + TX73_003210 0.61 -1.1 688,241 - TX73_003210 0.62 +0.1 688,272 - TX73_003210 0.64 +1.3 688,290 + TX73_003210 0.66 -0.2 688,290 + TX73_003210 0.66 -1.8 688,309 + TX73_003210 0.67 +1.7 688,327 - TX73_003210 0.69 -1.4 688,330 - TX73_003210 0.69 -0.4 688,341 + TX73_003210 0.70 +1.4 688,344 - TX73_003210 0.70 +0.8
Or see this region's nucleotide sequence