Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001965

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001960 and TX73_001965 are separated by 196 nucleotidesTX73_001965 and TX73_001970 are separated by 223 nucleotides TX73_001960: TX73_001960 - universal stress protein, at 410,487 to 411,311 _001960 TX73_001965: TX73_001965 - alpha-glucosidase/alpha-galactosidase, at 411,508 to 412,788 _001965 TX73_001970: TX73_001970 - 1-phosphofructokinase family hexose kinase, at 413,012 to 413,950 _001970 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 410.519 kb on + strandat 410.550 kb on + strandat 410.553 kb on - strandat 410.570 kb on + strand, within TX73_001960at 410.578 kb on - strand, within TX73_001960at 410.583 kb on - strand, within TX73_001960at 410.621 kb on + strand, within TX73_001960at 410.644 kb on - strand, within TX73_001960at 410.715 kb on + strand, within TX73_001960at 410.751 kb on - strand, within TX73_001960at 410.753 kb on + strand, within TX73_001960at 410.753 kb on + strand, within TX73_001960at 410.763 kb on + strand, within TX73_001960at 410.773 kb on + strand, within TX73_001960at 410.773 kb on + strand, within TX73_001960at 410.774 kb on + strand, within TX73_001960at 410.813 kb on + strand, within TX73_001960at 410.835 kb on + strand, within TX73_001960at 410.866 kb on + strand, within TX73_001960at 410.868 kb on + strand, within TX73_001960at 410.874 kb on - strand, within TX73_001960at 410.895 kb on + strand, within TX73_001960at 410.913 kb on + strand, within TX73_001960at 410.935 kb on - strand, within TX73_001960at 411.013 kb on + strand, within TX73_001960at 411.021 kb on - strand, within TX73_001960at 411.026 kb on - strand, within TX73_001960at 411.054 kb on - strand, within TX73_001960at 411.069 kb on - strand, within TX73_001960at 411.079 kb on + strand, within TX73_001960at 411.081 kb on + strand, within TX73_001960at 411.087 kb on - strand, within TX73_001960at 411.096 kb on + strand, within TX73_001960at 411.119 kb on + strand, within TX73_001960at 411.125 kb on + strand, within TX73_001960at 411.212 kb on + strand, within TX73_001960at 411.225 kb on - strand, within TX73_001960at 411.226 kb on + strand, within TX73_001960at 411.226 kb on + strand, within TX73_001960at 411.226 kb on + strand, within TX73_001960at 411.280 kb on - strandat 411.306 kb on + strandat 411.313 kb on - strandat 411.396 kb on + strandat 411.396 kb on - strandat 411.453 kb on + strandat 411.518 kb on - strandat 411.525 kb on - strandat 411.525 kb on - strandat 411.525 kb on - strandat 411.547 kb on - strandat 411.553 kb on + strandat 411.562 kb on + strandat 411.562 kb on + strandat 411.589 kb on - strandat 411.615 kb on - strandat 411.650 kb on + strand, within TX73_001965at 411.668 kb on - strand, within TX73_001965at 411.678 kb on - strand, within TX73_001965at 411.711 kb on - strand, within TX73_001965at 411.729 kb on - strand, within TX73_001965at 411.741 kb on + strand, within TX73_001965at 411.792 kb on - strand, within TX73_001965at 411.839 kb on - strand, within TX73_001965at 411.866 kb on + strand, within TX73_001965at 411.890 kb on + strand, within TX73_001965at 411.893 kb on - strand, within TX73_001965at 411.916 kb on - strand, within TX73_001965at 411.929 kb on + strand, within TX73_001965at 411.929 kb on + strand, within TX73_001965at 411.937 kb on - strand, within TX73_001965at 411.937 kb on - strand, within TX73_001965at 411.943 kb on + strand, within TX73_001965at 411.970 kb on - strand, within TX73_001965at 411.988 kb on - strand, within TX73_001965at 412.045 kb on + strand, within TX73_001965at 412.048 kb on - strand, within TX73_001965at 412.069 kb on + strand, within TX73_001965at 412.069 kb on + strand, within TX73_001965at 412.085 kb on + strand, within TX73_001965at 412.108 kb on + strand, within TX73_001965at 412.108 kb on + strand, within TX73_001965at 412.109 kb on - strand, within TX73_001965at 412.113 kb on + strand, within TX73_001965at 412.189 kb on + strand, within TX73_001965at 412.201 kb on + strand, within TX73_001965at 412.202 kb on - strand, within TX73_001965at 412.216 kb on - strand, within TX73_001965at 412.240 kb on - strand, within TX73_001965at 412.246 kb on - strand, within TX73_001965at 412.261 kb on + strand, within TX73_001965at 412.271 kb on + strand, within TX73_001965at 412.279 kb on - strand, within TX73_001965at 412.283 kb on - strand, within TX73_001965at 412.374 kb on + strand, within TX73_001965at 412.382 kb on - strand, within TX73_001965at 412.432 kb on - strand, within TX73_001965at 412.461 kb on + strand, within TX73_001965at 412.462 kb on + strand, within TX73_001965at 412.469 kb on - strand, within TX73_001965at 412.469 kb on - strand, within TX73_001965at 412.473 kb on - strand, within TX73_001965at 412.483 kb on + strand, within TX73_001965at 412.492 kb on + strand, within TX73_001965at 412.499 kb on - strand, within TX73_001965at 412.502 kb on + strand, within TX73_001965at 412.553 kb on + strand, within TX73_001965at 412.558 kb on + strand, within TX73_001965at 412.558 kb on + strand, within TX73_001965at 412.566 kb on - strand, within TX73_001965at 412.566 kb on - strand, within TX73_001965at 412.566 kb on - strand, within TX73_001965at 412.575 kb on + strand, within TX73_001965at 412.604 kb on + strand, within TX73_001965at 412.629 kb on - strand, within TX73_001965at 412.638 kb on + strand, within TX73_001965at 412.664 kb on - strandat 412.677 kb on + strandat 412.743 kb on + strandat 412.746 kb on + strandat 412.754 kb on - strandat 412.769 kb on + strandat 412.788 kb on + strandat 412.788 kb on + strandat 412.788 kb on + strandat 412.862 kb on + strandat 412.879 kb on - strandat 412.881 kb on + strandat 412.884 kb on - strandat 412.884 kb on - strandat 412.916 kb on - strandat 412.928 kb on + strandat 412.928 kb on - strandat 412.947 kb on - strandat 412.955 kb on + strandat 412.992 kb on + strandat 413.013 kb on - strandat 413.022 kb on - strandat 413.028 kb on + strandat 413.030 kb on - strandat 413.035 kb on + strandat 413.035 kb on + strandat 413.036 kb on - strandat 413.036 kb on - strandat 413.036 kb on - strandat 413.043 kb on - strandat 413.048 kb on - strandat 413.093 kb on - strandat 413.103 kb on - strandat 413.105 kb on + strandat 413.113 kb on - strand, within TX73_001970at 413.113 kb on - strand, within TX73_001970at 413.161 kb on - strand, within TX73_001970at 413.165 kb on + strand, within TX73_001970at 413.205 kb on + strand, within TX73_001970at 413.223 kb on - strand, within TX73_001970at 413.232 kb on - strand, within TX73_001970at 413.235 kb on - strand, within TX73_001970at 413.267 kb on + strand, within TX73_001970at 413.278 kb on - strand, within TX73_001970at 413.320 kb on + strand, within TX73_001970at 413.330 kb on + strand, within TX73_001970at 413.333 kb on + strand, within TX73_001970at 413.340 kb on + strand, within TX73_001970at 413.350 kb on + strand, within TX73_001970at 413.352 kb on - strand, within TX73_001970at 413.352 kb on - strand, within TX73_001970at 413.382 kb on + strand, within TX73_001970at 413.382 kb on + strand, within TX73_001970at 413.382 kb on + strand, within TX73_001970at 413.382 kb on - strand, within TX73_001970at 413.410 kb on - strand, within TX73_001970at 413.424 kb on + strand, within TX73_001970at 413.493 kb on + strand, within TX73_001970at 413.506 kb on - strand, within TX73_001970at 413.521 kb on - strand, within TX73_001970at 413.537 kb on + strand, within TX73_001970at 413.543 kb on + strand, within TX73_001970at 413.550 kb on + strand, within TX73_001970at 413.556 kb on - strand, within TX73_001970at 413.560 kb on + strand, within TX73_001970at 413.565 kb on + strand, within TX73_001970at 413.568 kb on - strand, within TX73_001970at 413.573 kb on - strand, within TX73_001970at 413.573 kb on - strand, within TX73_001970at 413.588 kb on - strand, within TX73_001970at 413.629 kb on - strand, within TX73_001970at 413.647 kb on + strand, within TX73_001970at 413.647 kb on + strand, within TX73_001970at 413.655 kb on - strand, within TX73_001970at 413.664 kb on - strand, within TX73_001970at 413.682 kb on + strand, within TX73_001970at 413.700 kb on - strand, within TX73_001970at 413.702 kb on + strand, within TX73_001970at 413.707 kb on + strand, within TX73_001970at 413.707 kb on + strand, within TX73_001970at 413.766 kb on - strand, within TX73_001970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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410,519 + -0.8
410,550 + -0.8
410,553 - -1.8
410,570 + TX73_001960 0.10 -0.2
410,578 - TX73_001960 0.11 -2.5
410,583 - TX73_001960 0.12 -0.0
410,621 + TX73_001960 0.16 -2.2
410,644 - TX73_001960 0.19 -1.0
410,715 + TX73_001960 0.28 -0.6
410,751 - TX73_001960 0.32 -1.8
410,753 + TX73_001960 0.32 +1.8
410,753 + TX73_001960 0.32 +2.9
410,763 + TX73_001960 0.33 -2.5
410,773 + TX73_001960 0.35 +0.9
410,773 + TX73_001960 0.35 +0.6
410,774 + TX73_001960 0.35 -1.0
410,813 + TX73_001960 0.40 -0.9
410,835 + TX73_001960 0.42 +0.1
410,866 + TX73_001960 0.46 +1.2
410,868 + TX73_001960 0.46 -1.8
410,874 - TX73_001960 0.47 +0.9
410,895 + TX73_001960 0.49 +0.4
410,913 + TX73_001960 0.52 -2.2
410,935 - TX73_001960 0.54 -0.6
411,013 + TX73_001960 0.64 +0.6
411,021 - TX73_001960 0.65 +1.2
411,026 - TX73_001960 0.65 -1.5
411,054 - TX73_001960 0.69 -2.0
411,069 - TX73_001960 0.71 -0.6
411,079 + TX73_001960 0.72 +0.4
411,081 + TX73_001960 0.72 +0.2
411,087 - TX73_001960 0.73 +3.6
411,096 + TX73_001960 0.74 +2.1
411,119 + TX73_001960 0.77 -3.6
411,125 + TX73_001960 0.77 -0.0
411,212 + TX73_001960 0.88 -0.4
411,225 - TX73_001960 0.89 +0.7
411,226 + TX73_001960 0.90 +0.6
411,226 + TX73_001960 0.90 -1.1
411,226 + TX73_001960 0.90 -0.1
411,280 - -1.3
411,306 + -0.2
411,313 - -0.7
411,396 + -2.1
411,396 - -0.4
411,453 + -1.1
411,518 - +0.5
411,525 - +0.5
411,525 - +0.3
411,525 - -0.2
411,547 - -0.5
411,553 + -0.2
411,562 + -1.7
411,562 + -1.7
411,589 - +0.6
411,615 - +0.0
411,650 + TX73_001965 0.11 +0.6
411,668 - TX73_001965 0.12 +0.4
411,678 - TX73_001965 0.13 -1.3
411,711 - TX73_001965 0.16 +0.5
411,729 - TX73_001965 0.17 +2.5
411,741 + TX73_001965 0.18 -1.0
411,792 - TX73_001965 0.22 -0.6
411,839 - TX73_001965 0.26 -2.4
411,866 + TX73_001965 0.28 -2.6
411,890 + TX73_001965 0.30 +1.9
411,893 - TX73_001965 0.30 -1.5
411,916 - TX73_001965 0.32 -0.1
411,929 + TX73_001965 0.33 -0.2
411,929 + TX73_001965 0.33 -2.5
411,937 - TX73_001965 0.33 -2.2
411,937 - TX73_001965 0.33 -2.7
411,943 + TX73_001965 0.34 -2.5
411,970 - TX73_001965 0.36 +2.4
411,988 - TX73_001965 0.37 -1.0
412,045 + TX73_001965 0.42 +1.4
412,048 - TX73_001965 0.42 -0.0
412,069 + TX73_001965 0.44 -1.3
412,069 + TX73_001965 0.44 -2.0
412,085 + TX73_001965 0.45 +0.4
412,108 + TX73_001965 0.47 -2.0
412,108 + TX73_001965 0.47 +1.3
412,109 - TX73_001965 0.47 +0.8
412,113 + TX73_001965 0.47 +0.3
412,189 + TX73_001965 0.53 +1.4
412,201 + TX73_001965 0.54 -3.2
412,202 - TX73_001965 0.54 +0.1
412,216 - TX73_001965 0.55 +0.0
412,240 - TX73_001965 0.57 -0.9
412,246 - TX73_001965 0.58 -1.3
412,261 + TX73_001965 0.59 +0.1
412,271 + TX73_001965 0.60 -0.8
412,279 - TX73_001965 0.60 +0.8
412,283 - TX73_001965 0.60 +0.4
412,374 + TX73_001965 0.68 +2.0
412,382 - TX73_001965 0.68 -2.8
412,432 - TX73_001965 0.72 +1.2
412,461 + TX73_001965 0.74 -1.7
412,462 + TX73_001965 0.74 -0.5
412,469 - TX73_001965 0.75 -1.8
412,469 - TX73_001965 0.75 -1.2
412,473 - TX73_001965 0.75 -0.4
412,483 + TX73_001965 0.76 -1.3
412,492 + TX73_001965 0.77 -1.4
412,499 - TX73_001965 0.77 -0.6
412,502 + TX73_001965 0.78 +1.8
412,553 + TX73_001965 0.82 -0.8
412,558 + TX73_001965 0.82 -0.9
412,558 + TX73_001965 0.82 +0.1
412,566 - TX73_001965 0.83 +2.1
412,566 - TX73_001965 0.83 -0.3
412,566 - TX73_001965 0.83 -1.2
412,575 + TX73_001965 0.83 -0.9
412,604 + TX73_001965 0.86 +0.0
412,629 - TX73_001965 0.88 -1.5
412,638 + TX73_001965 0.88 -1.3
412,664 - +1.7
412,677 + -1.8
412,743 + -2.7
412,746 + -1.3
412,754 - +0.7
412,769 + +1.8
412,788 + -1.0
412,788 + -0.6
412,788 + -2.5
412,862 + -0.9
412,879 - -1.8
412,881 + -2.8
412,884 - -0.8
412,884 - +0.2
412,916 - +1.2
412,928 + +1.0
412,928 - -2.0
412,947 - -2.6
412,955 + +0.5
412,992 + +0.0
413,013 - +2.4
413,022 - -0.7
413,028 + -1.5
413,030 - +1.5
413,035 + -0.9
413,035 + +0.3
413,036 - +0.1
413,036 - +1.0
413,036 - -1.5
413,043 - -1.3
413,048 - -0.3
413,093 - -0.5
413,103 - -0.4
413,105 + +0.6
413,113 - TX73_001970 0.11 -0.8
413,113 - TX73_001970 0.11 +0.4
413,161 - TX73_001970 0.16 -0.7
413,165 + TX73_001970 0.16 +0.6
413,205 + TX73_001970 0.21 +0.5
413,223 - TX73_001970 0.22 +2.2
413,232 - TX73_001970 0.23 +0.0
413,235 - TX73_001970 0.24 -1.6
413,267 + TX73_001970 0.27 +0.2
413,278 - TX73_001970 0.28 -1.2
413,320 + TX73_001970 0.33 +0.4
413,330 + TX73_001970 0.34 -0.2
413,333 + TX73_001970 0.34 +2.0
413,340 + TX73_001970 0.35 -1.5
413,350 + TX73_001970 0.36 -1.4
413,352 - TX73_001970 0.36 +2.5
413,352 - TX73_001970 0.36 +0.3
413,382 + TX73_001970 0.39 +0.0
413,382 + TX73_001970 0.39 -0.6
413,382 + TX73_001970 0.39 +1.0
413,382 - TX73_001970 0.39 -0.5
413,410 - TX73_001970 0.42 +1.8
413,424 + TX73_001970 0.44 +1.4
413,493 + TX73_001970 0.51 -2.6
413,506 - TX73_001970 0.53 -2.1
413,521 - TX73_001970 0.54 +1.1
413,537 + TX73_001970 0.56 -0.7
413,543 + TX73_001970 0.57 -0.4
413,550 + TX73_001970 0.57 +0.9
413,556 - TX73_001970 0.58 -1.0
413,560 + TX73_001970 0.58 -2.2
413,565 + TX73_001970 0.59 +1.9
413,568 - TX73_001970 0.59 -0.8
413,573 - TX73_001970 0.60 -0.3
413,573 - TX73_001970 0.60 +0.9
413,588 - TX73_001970 0.61 +2.8
413,629 - TX73_001970 0.66 +1.5
413,647 + TX73_001970 0.68 -1.5
413,647 + TX73_001970 0.68 -1.6
413,655 - TX73_001970 0.68 -0.6
413,664 - TX73_001970 0.69 +0.3
413,682 + TX73_001970 0.71 +0.8
413,700 - TX73_001970 0.73 +0.7
413,702 + TX73_001970 0.73 -1.6
413,707 + TX73_001970 0.74 -3.5
413,707 + TX73_001970 0.74 +1.0
413,766 - TX73_001970 0.80 +0.1

Or see this region's nucleotide sequence