Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001875

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001870 and TX73_001875 are separated by 268 nucleotidesTX73_001875 and TX73_001880 are separated by 14 nucleotides TX73_001870: TX73_001870 - hypothetical protein, at 391,504 to 392,379 _001870 TX73_001875: TX73_001875 - class A beta-lactamase, at 392,648 to 393,523 _001875 TX73_001880: TX73_001880 - endonuclease/exonuclease/phosphatase family protein, at 393,538 to 394,665 _001880 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 391.657 kb on - strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.721 kb on + strand, within TX73_001870at 391.729 kb on - strand, within TX73_001870at 391.729 kb on - strand, within TX73_001870at 391.758 kb on + strand, within TX73_001870at 391.770 kb on + strand, within TX73_001870at 391.800 kb on - strand, within TX73_001870at 391.810 kb on - strand, within TX73_001870at 391.810 kb on - strand, within TX73_001870at 391.810 kb on - strand, within TX73_001870at 391.848 kb on + strand, within TX73_001870at 391.904 kb on + strand, within TX73_001870at 391.909 kb on + strand, within TX73_001870at 391.909 kb on + strand, within TX73_001870at 391.909 kb on + strand, within TX73_001870at 391.917 kb on - strand, within TX73_001870at 391.951 kb on - strand, within TX73_001870at 391.952 kb on + strand, within TX73_001870at 391.959 kb on + strand, within TX73_001870at 391.960 kb on - strand, within TX73_001870at 392.003 kb on + strand, within TX73_001870at 392.011 kb on - strand, within TX73_001870at 392.077 kb on + strand, within TX73_001870at 392.085 kb on - strand, within TX73_001870at 392.090 kb on + strand, within TX73_001870at 392.098 kb on + strand, within TX73_001870at 392.098 kb on + strand, within TX73_001870at 392.100 kb on + strand, within TX73_001870at 392.105 kb on + strand, within TX73_001870at 392.106 kb on - strand, within TX73_001870at 392.111 kb on - strand, within TX73_001870at 392.111 kb on - strand, within TX73_001870at 392.141 kb on + strand, within TX73_001870at 392.141 kb on + strand, within TX73_001870at 392.194 kb on + strand, within TX73_001870at 392.212 kb on - strand, within TX73_001870at 392.212 kb on - strand, within TX73_001870at 392.213 kb on + strand, within TX73_001870at 392.224 kb on + strand, within TX73_001870at 392.224 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.225 kb on + strand, within TX73_001870at 392.232 kb on - strand, within TX73_001870at 392.232 kb on - strand, within TX73_001870at 392.232 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.233 kb on - strand, within TX73_001870at 392.243 kb on + strand, within TX73_001870at 392.243 kb on + strand, within TX73_001870at 392.243 kb on + strand, within TX73_001870at 392.251 kb on - strand, within TX73_001870at 392.284 kb on + strand, within TX73_001870at 392.284 kb on + strand, within TX73_001870at 392.292 kb on - strandat 392.292 kb on - strandat 392.292 kb on - strandat 392.292 kb on - strandat 392.353 kb on + strandat 392.377 kb on - strandat 392.389 kb on - strandat 392.389 kb on - strandat 392.432 kb on + strandat 392.440 kb on - strandat 392.585 kb on + strandat 392.610 kb on + strandat 392.610 kb on + strandat 392.694 kb on + strandat 392.694 kb on + strandat 392.694 kb on + strandat 392.701 kb on - strandat 392.702 kb on - strandat 392.702 kb on - strandat 392.792 kb on + strand, within TX73_001875at 392.797 kb on + strand, within TX73_001875at 392.862 kb on + strand, within TX73_001875at 392.882 kb on + strand, within TX73_001875at 392.893 kb on + strand, within TX73_001875at 392.899 kb on + strand, within TX73_001875at 392.946 kb on + strand, within TX73_001875at 392.953 kb on - strand, within TX73_001875at 392.988 kb on - strand, within TX73_001875at 392.996 kb on + strand, within TX73_001875at 393.024 kb on - strand, within TX73_001875at 393.080 kb on + strand, within TX73_001875at 393.106 kb on - strand, within TX73_001875at 393.142 kb on + strand, within TX73_001875at 393.189 kb on + strand, within TX73_001875at 393.233 kb on - strand, within TX73_001875at 393.303 kb on + strand, within TX73_001875at 393.311 kb on - strand, within TX73_001875at 393.326 kb on - strand, within TX73_001875at 393.387 kb on + strand, within TX73_001875at 393.397 kb on - strand, within TX73_001875at 393.402 kb on - strand, within TX73_001875at 393.444 kb on + strandat 393.495 kb on - strandat 393.517 kb on + strandat 393.594 kb on - strandat 393.673 kb on - strand, within TX73_001880at 393.676 kb on + strand, within TX73_001880at 393.685 kb on + strand, within TX73_001880at 393.737 kb on - strand, within TX73_001880at 393.755 kb on + strand, within TX73_001880at 393.757 kb on + strand, within TX73_001880at 393.763 kb on - strand, within TX73_001880at 393.850 kb on + strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.931 kb on - strand, within TX73_001880at 393.966 kb on + strand, within TX73_001880at 394.069 kb on - strand, within TX73_001880at 394.075 kb on - strand, within TX73_001880at 394.109 kb on - strand, within TX73_001880at 394.118 kb on - strand, within TX73_001880at 394.140 kb on - strand, within TX73_001880at 394.161 kb on - strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.178 kb on - strand, within TX73_001880at 394.268 kb on - strand, within TX73_001880at 394.376 kb on - strand, within TX73_001880at 394.401 kb on + strand, within TX73_001880at 394.411 kb on + strand, within TX73_001880at 394.428 kb on - strand, within TX73_001880at 394.472 kb on + strand, within TX73_001880at 394.485 kb on - strand, within TX73_001880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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391,657 - TX73_001870 0.17 -1.5
391,721 + TX73_001870 0.25 -0.5
391,721 + TX73_001870 0.25 -1.2
391,721 + TX73_001870 0.25 +0.8
391,721 + TX73_001870 0.25 +2.5
391,721 + TX73_001870 0.25 -0.1
391,721 + TX73_001870 0.25 +2.0
391,729 - TX73_001870 0.26 -0.0
391,729 - TX73_001870 0.26 +1.2
391,758 + TX73_001870 0.29 +1.9
391,770 + TX73_001870 0.30 -0.2
391,800 - TX73_001870 0.34 +1.0
391,810 - TX73_001870 0.35 +1.1
391,810 - TX73_001870 0.35 -0.3
391,810 - TX73_001870 0.35 -3.1
391,848 + TX73_001870 0.39 -1.3
391,904 + TX73_001870 0.46 +1.2
391,909 + TX73_001870 0.46 +3.1
391,909 + TX73_001870 0.46 +1.6
391,909 + TX73_001870 0.46 +1.3
391,917 - TX73_001870 0.47 +0.8
391,951 - TX73_001870 0.51 -0.5
391,952 + TX73_001870 0.51 +1.8
391,959 + TX73_001870 0.52 -1.8
391,960 - TX73_001870 0.52 +2.0
392,003 + TX73_001870 0.57 -0.7
392,011 - TX73_001870 0.58 -2.2
392,077 + TX73_001870 0.65 -1.0
392,085 - TX73_001870 0.66 -1.7
392,090 + TX73_001870 0.67 +1.7
392,098 + TX73_001870 0.68 -1.0
392,098 + TX73_001870 0.68 +0.9
392,100 + TX73_001870 0.68 +0.1
392,105 + TX73_001870 0.69 -0.3
392,106 - TX73_001870 0.69 +0.2
392,111 - TX73_001870 0.69 -0.4
392,111 - TX73_001870 0.69 -0.8
392,141 + TX73_001870 0.73 -1.2
392,141 + TX73_001870 0.73 -1.2
392,194 + TX73_001870 0.79 +1.3
392,212 - TX73_001870 0.81 -0.4
392,212 - TX73_001870 0.81 -0.7
392,213 + TX73_001870 0.81 -2.0
392,224 + TX73_001870 0.82 -3.1
392,224 + TX73_001870 0.82 +0.2
392,225 + TX73_001870 0.82 +2.1
392,225 + TX73_001870 0.82 -0.5
392,225 + TX73_001870 0.82 +1.0
392,225 + TX73_001870 0.82 -1.7
392,225 + TX73_001870 0.82 -1.5
392,225 + TX73_001870 0.82 +1.4
392,225 + TX73_001870 0.82 +1.6
392,225 + TX73_001870 0.82 +1.5
392,232 - TX73_001870 0.83 -2.3
392,232 - TX73_001870 0.83 +1.9
392,232 - TX73_001870 0.83 +0.6
392,233 - TX73_001870 0.83 -2.2
392,233 - TX73_001870 0.83 -0.3
392,233 - TX73_001870 0.83 +2.5
392,233 - TX73_001870 0.83 -1.1
392,233 - TX73_001870 0.83 +2.7
392,233 - TX73_001870 0.83 -0.6
392,233 - TX73_001870 0.83 +1.3
392,233 - TX73_001870 0.83 +0.4
392,233 - TX73_001870 0.83 -3.3
392,233 - TX73_001870 0.83 +3.0
392,233 - TX73_001870 0.83 -2.3
392,233 - TX73_001870 0.83 -0.5
392,243 + TX73_001870 0.84 -0.9
392,243 + TX73_001870 0.84 -0.7
392,243 + TX73_001870 0.84 +2.3
392,251 - TX73_001870 0.85 -1.1
392,284 + TX73_001870 0.89 +0.0
392,284 + TX73_001870 0.89 +0.8
392,292 - -1.2
392,292 - -0.5
392,292 - -0.2
392,292 - +1.4
392,353 + +2.2
392,377 - +0.7
392,389 - +0.2
392,389 - +1.2
392,432 + +1.5
392,440 - -1.5
392,585 + -1.8
392,610 + -1.4
392,610 + +0.4
392,694 + +3.8
392,694 + +0.9
392,694 + -0.7
392,701 - -0.3
392,702 - +2.2
392,702 - +0.8
392,792 + TX73_001875 0.16 +2.9
392,797 + TX73_001875 0.17 +0.1
392,862 + TX73_001875 0.24 -1.4
392,882 + TX73_001875 0.27 +0.8
392,893 + TX73_001875 0.28 -0.0
392,899 + TX73_001875 0.29 -3.3
392,946 + TX73_001875 0.34 -0.5
392,953 - TX73_001875 0.35 +0.1
392,988 - TX73_001875 0.39 -2.0
392,996 + TX73_001875 0.40 -0.5
393,024 - TX73_001875 0.43 +1.0
393,080 + TX73_001875 0.49 +2.3
393,106 - TX73_001875 0.52 +1.0
393,142 + TX73_001875 0.56 +2.0
393,189 + TX73_001875 0.62 +0.6
393,233 - TX73_001875 0.67 +0.3
393,303 + TX73_001875 0.75 -0.9
393,311 - TX73_001875 0.76 -0.0
393,326 - TX73_001875 0.77 +3.5
393,387 + TX73_001875 0.84 +1.2
393,397 - TX73_001875 0.86 +0.4
393,402 - TX73_001875 0.86 +1.4
393,444 + -1.2
393,495 - -1.1
393,517 + -2.8
393,594 - +1.5
393,673 - TX73_001880 0.12 -1.7
393,676 + TX73_001880 0.12 -1.9
393,685 + TX73_001880 0.13 -2.5
393,737 - TX73_001880 0.18 +1.1
393,755 + TX73_001880 0.19 +0.4
393,757 + TX73_001880 0.19 -1.5
393,763 - TX73_001880 0.20 +0.3
393,850 + TX73_001880 0.28 +2.8
393,875 - TX73_001880 0.30 +2.0
393,875 - TX73_001880 0.30 -0.4
393,931 - TX73_001880 0.35 -1.6
393,966 + TX73_001880 0.38 +1.6
394,069 - TX73_001880 0.47 +1.3
394,075 - TX73_001880 0.48 +2.8
394,109 - TX73_001880 0.51 +1.4
394,118 - TX73_001880 0.51 +0.5
394,140 - TX73_001880 0.53 +0.3
394,161 - TX73_001880 0.55 -1.0
394,163 + TX73_001880 0.55 -1.2
394,163 + TX73_001880 0.55 -1.0
394,178 - TX73_001880 0.57 -1.4
394,268 - TX73_001880 0.65 -1.8
394,376 - TX73_001880 0.74 -1.8
394,401 + TX73_001880 0.77 -1.3
394,411 + TX73_001880 0.77 +0.1
394,428 - TX73_001880 0.79 -0.3
394,472 + TX73_001880 0.83 +1.5
394,485 - TX73_001880 0.84 +0.6

Or see this region's nucleotide sequence