Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000285

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000275 and TX73_000280 are separated by 50 nucleotidesTX73_000280 and TX73_000285 are separated by 153 nucleotidesTX73_000285 and TX73_000290 are separated by 2 nucleotidesTX73_000290 and TX73_000295 overlap by 1 nucleotides TX73_000275: TX73_000275 - DUF1150 domain-containing protein, at 59,691 to 59,957 _000275 TX73_000280: TX73_000280 - Hsp20 family protein, at 60,008 to 60,433 _000280 TX73_000285: TX73_000285 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 60,587 to 61,678 _000285 TX73_000290: TX73_000290 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 61,681 to 62,529 _000290 TX73_000295: TX73_000295 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 62,529 to 63,410 _000295 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 59.633 kb on - strandat 59.695 kb on - strandat 59.720 kb on + strand, within TX73_000275at 59.721 kb on + strand, within TX73_000275at 59.721 kb on + strand, within TX73_000275at 59.722 kb on - strand, within TX73_000275at 59.782 kb on + strand, within TX73_000275at 59.790 kb on - strand, within TX73_000275at 59.790 kb on - strand, within TX73_000275at 59.790 kb on - strand, within TX73_000275at 59.809 kb on - strand, within TX73_000275at 59.809 kb on - strand, within TX73_000275at 59.857 kb on + strand, within TX73_000275at 59.875 kb on - strand, within TX73_000275at 59.885 kb on - strand, within TX73_000275at 59.888 kb on - strand, within TX73_000275at 59.892 kb on + strand, within TX73_000275at 59.912 kb on + strand, within TX73_000275at 59.917 kb on - strand, within TX73_000275at 59.937 kb on + strandat 59.941 kb on + strandat 59.944 kb on - strandat 59.966 kb on - strandat 59.967 kb on - strandat 59.968 kb on + strandat 59.969 kb on + strandat 60.094 kb on + strand, within TX73_000280at 60.102 kb on + strand, within TX73_000280at 60.125 kb on - strand, within TX73_000280at 60.204 kb on + strand, within TX73_000280at 60.266 kb on - strand, within TX73_000280at 60.271 kb on + strand, within TX73_000280at 60.272 kb on - strand, within TX73_000280at 60.294 kb on - strand, within TX73_000280at 60.295 kb on - strand, within TX73_000280at 60.329 kb on + strand, within TX73_000280at 60.350 kb on + strand, within TX73_000280at 60.350 kb on + strand, within TX73_000280at 60.358 kb on + strand, within TX73_000280at 60.373 kb on - strand, within TX73_000280at 60.373 kb on - strand, within TX73_000280at 60.375 kb on + strand, within TX73_000280at 60.375 kb on + strand, within TX73_000280at 60.383 kb on - strand, within TX73_000280at 60.385 kb on + strand, within TX73_000280at 60.405 kb on + strandat 60.408 kb on + strandat 60.424 kb on + strandat 60.455 kb on + strandat 60.462 kb on - strandat 60.462 kb on - strandat 60.462 kb on - strandat 60.478 kb on + strandat 60.483 kb on + strandat 60.488 kb on + strandat 60.496 kb on - strandat 60.503 kb on + strandat 60.503 kb on + strandat 60.508 kb on + strandat 60.508 kb on + strandat 60.511 kb on - strandat 60.516 kb on - strandat 60.517 kb on + strandat 60.517 kb on + strandat 60.517 kb on + strandat 60.517 kb on + strandat 60.517 kb on + strandat 60.525 kb on - strandat 60.525 kb on - strandat 60.525 kb on - strandat 60.525 kb on - strandat 60.540 kb on + strandat 60.540 kb on + strandat 60.615 kb on + strandat 60.625 kb on + strandat 60.627 kb on + strandat 60.651 kb on + strandat 60.651 kb on + strandat 60.659 kb on + strandat 60.659 kb on - strandat 60.659 kb on - strandat 60.681 kb on + strandat 60.689 kb on - strandat 60.704 kb on + strand, within TX73_000285at 60.719 kb on - strand, within TX73_000285at 60.782 kb on - strand, within TX73_000285at 60.782 kb on - strand, within TX73_000285at 60.819 kb on - strand, within TX73_000285at 60.829 kb on - strand, within TX73_000285at 60.839 kb on + strand, within TX73_000285at 60.847 kb on - strand, within TX73_000285at 60.847 kb on - strand, within TX73_000285at 60.847 kb on - strand, within TX73_000285at 60.853 kb on + strand, within TX73_000285at 60.853 kb on + strand, within TX73_000285at 60.874 kb on + strand, within TX73_000285at 60.915 kb on + strand, within TX73_000285at 60.915 kb on + strand, within TX73_000285at 60.917 kb on + strand, within TX73_000285at 60.923 kb on - strand, within TX73_000285at 60.928 kb on - strand, within TX73_000285at 60.942 kb on - strand, within TX73_000285at 60.947 kb on + strand, within TX73_000285at 61.003 kb on + strand, within TX73_000285at 61.008 kb on + strand, within TX73_000285at 61.094 kb on - strand, within TX73_000285at 61.096 kb on + strand, within TX73_000285at 61.097 kb on + strand, within TX73_000285at 61.104 kb on - strand, within TX73_000285at 61.107 kb on + strand, within TX73_000285at 61.108 kb on + strand, within TX73_000285at 61.133 kb on + strand, within TX73_000285at 61.244 kb on - strand, within TX73_000285at 61.361 kb on - strand, within TX73_000285at 61.410 kb on - strand, within TX73_000285at 61.412 kb on - strand, within TX73_000285at 61.534 kb on + strand, within TX73_000285at 61.591 kb on - strandat 61.613 kb on + strandat 61.731 kb on + strandat 61.841 kb on + strand, within TX73_000290at 61.864 kb on + strand, within TX73_000290at 61.920 kb on + strand, within TX73_000290at 62.014 kb on + strand, within TX73_000290at 62.032 kb on - strand, within TX73_000290at 62.290 kb on + strand, within TX73_000290at 62.332 kb on - strand, within TX73_000290at 62.419 kb on + strand, within TX73_000290at 62.419 kb on + strand, within TX73_000290at 62.419 kb on + strand, within TX73_000290at 62.427 kb on - strand, within TX73_000290at 62.427 kb on - strand, within TX73_000290at 62.427 kb on - strand, within TX73_000290at 62.567 kb on - strandat 62.627 kb on + strand, within TX73_000295at 62.627 kb on + strand, within TX73_000295at 62.635 kb on - strand, within TX73_000295at 62.635 kb on - strand, within TX73_000295at 62.635 kb on - strand, within TX73_000295at 62.635 kb on - strand, within TX73_000295at 62.637 kb on + strand, within TX73_000295at 62.667 kb on - strand, within TX73_000295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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59,633 - +2.3
59,695 - +1.1
59,720 + TX73_000275 0.11 +1.9
59,721 + TX73_000275 0.11 +1.0
59,721 + TX73_000275 0.11 -0.9
59,722 - TX73_000275 0.12 +0.8
59,782 + TX73_000275 0.34 -0.5
59,790 - TX73_000275 0.37 +1.8
59,790 - TX73_000275 0.37 +0.8
59,790 - TX73_000275 0.37 -1.1
59,809 - TX73_000275 0.44 -2.2
59,809 - TX73_000275 0.44 +1.2
59,857 + TX73_000275 0.62 +0.9
59,875 - TX73_000275 0.69 -2.2
59,885 - TX73_000275 0.73 -2.1
59,888 - TX73_000275 0.74 +0.7
59,892 + TX73_000275 0.75 +0.1
59,912 + TX73_000275 0.83 +0.9
59,917 - TX73_000275 0.85 -2.4
59,937 + -1.1
59,941 + +0.6
59,944 - -2.2
59,966 - +1.3
59,967 - +0.9
59,968 + +2.3
59,969 + -1.4
60,094 + TX73_000280 0.20 +2.3
60,102 + TX73_000280 0.22 -2.3
60,125 - TX73_000280 0.27 +2.8
60,204 + TX73_000280 0.46 +2.1
60,266 - TX73_000280 0.61 +0.4
60,271 + TX73_000280 0.62 -0.8
60,272 - TX73_000280 0.62 +0.9
60,294 - TX73_000280 0.67 -0.6
60,295 - TX73_000280 0.67 -0.1
60,329 + TX73_000280 0.75 -0.5
60,350 + TX73_000280 0.80 +1.1
60,350 + TX73_000280 0.80 +4.0
60,358 + TX73_000280 0.82 +2.1
60,373 - TX73_000280 0.86 +1.4
60,373 - TX73_000280 0.86 -1.4
60,375 + TX73_000280 0.86 +2.0
60,375 + TX73_000280 0.86 +1.8
60,383 - TX73_000280 0.88 -2.4
60,385 + TX73_000280 0.88 +2.0
60,405 + -1.4
60,408 + -1.9
60,424 + +0.2
60,455 + -0.9
60,462 - +0.9
60,462 - +0.4
60,462 - +1.1
60,478 + +0.3
60,483 + +2.8
60,488 + +0.3
60,496 - +1.0
60,503 + +2.5
60,503 + -0.2
60,508 + +1.1
60,508 + -0.3
60,511 - +1.3
60,516 - +1.3
60,517 + -0.3
60,517 + -1.9
60,517 + +1.1
60,517 + +1.6
60,517 + +1.8
60,525 - +0.5
60,525 - +0.3
60,525 - +0.4
60,525 - +0.3
60,540 + -0.2
60,540 + +1.0
60,615 + -2.5
60,625 + +1.0
60,627 + -0.9
60,651 + -0.1
60,651 + -0.7
60,659 + +0.8
60,659 - +0.4
60,659 - -2.2
60,681 + -0.5
60,689 - -0.7
60,704 + TX73_000285 0.11 -1.3
60,719 - TX73_000285 0.12 -1.1
60,782 - TX73_000285 0.18 -2.6
60,782 - TX73_000285 0.18 +0.3
60,819 - TX73_000285 0.21 -1.3
60,829 - TX73_000285 0.22 -1.2
60,839 + TX73_000285 0.23 +0.3
60,847 - TX73_000285 0.24 -1.3
60,847 - TX73_000285 0.24 -2.3
60,847 - TX73_000285 0.24 -1.0
60,853 + TX73_000285 0.24 +1.1
60,853 + TX73_000285 0.24 -3.0
60,874 + TX73_000285 0.26 -3.5
60,915 + TX73_000285 0.30 +0.4
60,915 + TX73_000285 0.30 +1.3
60,917 + TX73_000285 0.30 -0.3
60,923 - TX73_000285 0.31 +2.3
60,928 - TX73_000285 0.31 +1.7
60,942 - TX73_000285 0.33 -0.1
60,947 + TX73_000285 0.33 +0.9
61,003 + TX73_000285 0.38 +1.0
61,008 + TX73_000285 0.39 +1.8
61,094 - TX73_000285 0.46 -2.2
61,096 + TX73_000285 0.47 +0.9
61,097 + TX73_000285 0.47 +2.1
61,104 - TX73_000285 0.47 +2.1
61,107 + TX73_000285 0.48 -0.1
61,108 + TX73_000285 0.48 -1.1
61,133 + TX73_000285 0.50 -2.6
61,244 - TX73_000285 0.60 +0.3
61,361 - TX73_000285 0.71 +1.8
61,410 - TX73_000285 0.75 +0.5
61,412 - TX73_000285 0.76 -2.0
61,534 + TX73_000285 0.87 -0.9
61,591 - -1.1
61,613 + +0.7
61,731 + +0.0
61,841 + TX73_000290 0.19 -1.2
61,864 + TX73_000290 0.22 +0.6
61,920 + TX73_000290 0.28 -1.9
62,014 + TX73_000290 0.39 -0.3
62,032 - TX73_000290 0.41 -0.6
62,290 + TX73_000290 0.72 +1.1
62,332 - TX73_000290 0.77 -0.9
62,419 + TX73_000290 0.87 +0.2
62,419 + TX73_000290 0.87 -1.9
62,419 + TX73_000290 0.87 +0.0
62,427 - TX73_000290 0.88 +0.2
62,427 - TX73_000290 0.88 -0.7
62,427 - TX73_000290 0.88 +0.4
62,567 - -0.7
62,627 + TX73_000295 0.11 -1.4
62,627 + TX73_000295 0.11 +1.2
62,635 - TX73_000295 0.12 -2.8
62,635 - TX73_000295 0.12 -1.1
62,635 - TX73_000295 0.12 -2.2
62,635 - TX73_000295 0.12 -1.3
62,637 + TX73_000295 0.12 -0.7
62,667 - TX73_000295 0.16 -1.2

Or see this region's nucleotide sequence