Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00455

Experiment: LB agar plate coculture with Mixed culture; Kribbella shirazensis SAI_226 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00454 and MPMX20_00455 are separated by 56 nucleotidesMPMX20_00455 and MPMX20_00456 are separated by 2 nucleotides MPMX20_00454: MPMX20_00454 - GTPase HflX, at 468,516 to 469,796 _00454 MPMX20_00455: MPMX20_00455 - Modulator of FtsH protease HflK, at 469,853 to 471,115 _00455 MPMX20_00456: MPMX20_00456 - Modulator of FtsH protease HflC, at 471,118 to 472,122 _00456 Position (kb) 469 470 471 472Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 468.878 kb on + strand, within MPMX20_00454at 468.878 kb on + strand, within MPMX20_00454at 468.905 kb on - strand, within MPMX20_00454at 468.907 kb on + strand, within MPMX20_00454at 468.939 kb on - strand, within MPMX20_00454at 468.992 kb on + strand, within MPMX20_00454at 469.024 kb on + strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454at 469.065 kb on - strand, within MPMX20_00454at 469.091 kb on + strand, within MPMX20_00454at 469.105 kb on + strand, within MPMX20_00454at 469.125 kb on + strand, within MPMX20_00454at 469.133 kb on - strand, within MPMX20_00454at 469.161 kb on - strand, within MPMX20_00454at 469.172 kb on + strand, within MPMX20_00454at 469.186 kb on - strand, within MPMX20_00454at 469.191 kb on + strand, within MPMX20_00454at 469.199 kb on - strand, within MPMX20_00454at 469.199 kb on - strand, within MPMX20_00454at 469.236 kb on - strand, within MPMX20_00454at 469.270 kb on + strand, within MPMX20_00454at 469.275 kb on + strand, within MPMX20_00454at 469.312 kb on + strand, within MPMX20_00454at 469.321 kb on - strand, within MPMX20_00454at 469.364 kb on + strand, within MPMX20_00454at 469.517 kb on + strand, within MPMX20_00454at 469.638 kb on + strand, within MPMX20_00454at 469.670 kb on + strandat 469.693 kb on + strandat 469.702 kb on - strandat 469.702 kb on - strandat 469.719 kb on - strandat 469.747 kb on + strandat 469.768 kb on + strandat 469.790 kb on - strandat 470.050 kb on + strand, within MPMX20_00455at 470.079 kb on - strand, within MPMX20_00455at 470.093 kb on + strand, within MPMX20_00455at 470.130 kb on - strand, within MPMX20_00455at 470.140 kb on + strand, within MPMX20_00455at 470.203 kb on + strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.388 kb on + strand, within MPMX20_00455at 470.428 kb on + strand, within MPMX20_00455at 470.501 kb on - strand, within MPMX20_00455at 470.563 kb on + strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.590 kb on + strand, within MPMX20_00455at 470.665 kb on + strand, within MPMX20_00455at 470.668 kb on - strand, within MPMX20_00455at 470.675 kb on + strand, within MPMX20_00455at 470.694 kb on + strand, within MPMX20_00455at 470.702 kb on - strand, within MPMX20_00455at 470.735 kb on + strand, within MPMX20_00455at 470.753 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.812 kb on - strand, within MPMX20_00455at 470.871 kb on + strand, within MPMX20_00455at 470.879 kb on - strand, within MPMX20_00455at 470.910 kb on - strand, within MPMX20_00455at 471.085 kb on + strandat 471.093 kb on - strandat 471.093 kb on - strandat 471.128 kb on + strandat 471.276 kb on - strand, within MPMX20_00456at 471.291 kb on + strand, within MPMX20_00456at 471.325 kb on - strand, within MPMX20_00456at 471.410 kb on - strand, within MPMX20_00456at 471.428 kb on + strand, within MPMX20_00456at 471.428 kb on + strand, within MPMX20_00456at 471.590 kb on - strand, within MPMX20_00456at 471.663 kb on - strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.713 kb on - strand, within MPMX20_00456at 471.715 kb on + strand, within MPMX20_00456at 471.715 kb on - strand, within MPMX20_00456at 471.723 kb on - strand, within MPMX20_00456at 471.743 kb on + strand, within MPMX20_00456at 471.774 kb on + strand, within MPMX20_00456at 471.784 kb on + strand, within MPMX20_00456at 471.842 kb on + strand, within MPMX20_00456at 471.898 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.935 kb on + strand, within MPMX20_00456at 471.993 kb on - strand, within MPMX20_00456at 472.104 kb on + strandat 472.104 kb on + strandat 472.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Kribbella shirazensis SAI_226 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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468,878 + MPMX20_00454 0.28 -1.2
468,878 + MPMX20_00454 0.28 -0.1
468,905 - MPMX20_00454 0.30 -3.0
468,907 + MPMX20_00454 0.31 -0.2
468,939 - MPMX20_00454 0.33 -1.7
468,992 + MPMX20_00454 0.37 +0.7
469,024 + MPMX20_00454 0.40 -1.7
469,032 - MPMX20_00454 0.40 -1.6
469,032 - MPMX20_00454 0.40 -0.7
469,065 - MPMX20_00454 0.43 -0.3
469,091 + MPMX20_00454 0.45 -0.3
469,105 + MPMX20_00454 0.46 -0.5
469,125 + MPMX20_00454 0.48 -1.2
469,133 - MPMX20_00454 0.48 -0.7
469,161 - MPMX20_00454 0.50 -1.1
469,172 + MPMX20_00454 0.51 -1.0
469,186 - MPMX20_00454 0.52 -2.8
469,191 + MPMX20_00454 0.53 +1.8
469,199 - MPMX20_00454 0.53 -2.0
469,199 - MPMX20_00454 0.53 -2.1
469,236 - MPMX20_00454 0.56 -1.3
469,270 + MPMX20_00454 0.59 +1.1
469,275 + MPMX20_00454 0.59 -0.8
469,312 + MPMX20_00454 0.62 +0.6
469,321 - MPMX20_00454 0.63 -2.2
469,364 + MPMX20_00454 0.66 -1.4
469,517 + MPMX20_00454 0.78 -4.2
469,638 + MPMX20_00454 0.88 +1.2
469,670 + +1.3
469,693 + -3.0
469,702 - -0.9
469,702 - -1.7
469,719 - -0.9
469,747 + +2.2
469,768 + +0.4
469,790 - -0.2
470,050 + MPMX20_00455 0.16 -0.7
470,079 - MPMX20_00455 0.18 +0.3
470,093 + MPMX20_00455 0.19 -1.2
470,130 - MPMX20_00455 0.22 -1.7
470,140 + MPMX20_00455 0.23 -0.6
470,203 + MPMX20_00455 0.28 -0.3
470,312 - MPMX20_00455 0.36 -1.2
470,312 - MPMX20_00455 0.36 -0.1
470,388 + MPMX20_00455 0.42 -2.0
470,428 + MPMX20_00455 0.46 -0.8
470,501 - MPMX20_00455 0.51 -3.9
470,563 + MPMX20_00455 0.56 -1.6
470,571 - MPMX20_00455 0.57 -0.6
470,571 - MPMX20_00455 0.57 -2.3
470,590 + MPMX20_00455 0.58 -0.3
470,665 + MPMX20_00455 0.64 -1.2
470,668 - MPMX20_00455 0.65 -0.8
470,675 + MPMX20_00455 0.65 -1.0
470,694 + MPMX20_00455 0.67 -2.5
470,702 - MPMX20_00455 0.67 -0.7
470,735 + MPMX20_00455 0.70 -1.4
470,753 + MPMX20_00455 0.71 -3.6
470,758 + MPMX20_00455 0.72 -0.5
470,758 + MPMX20_00455 0.72 -3.2
470,758 + MPMX20_00455 0.72 +0.5
470,758 + MPMX20_00455 0.72 -2.6
470,812 - MPMX20_00455 0.76 -3.4
470,871 + MPMX20_00455 0.81 -0.2
470,879 - MPMX20_00455 0.81 +1.0
470,910 - MPMX20_00455 0.84 +0.1
471,085 + -1.9
471,093 - -0.2
471,093 - +0.2
471,128 + -3.5
471,276 - MPMX20_00456 0.16 +0.6
471,291 + MPMX20_00456 0.17 -0.2
471,325 - MPMX20_00456 0.21 -0.1
471,410 - MPMX20_00456 0.29 -3.9
471,428 + MPMX20_00456 0.31 -0.4
471,428 + MPMX20_00456 0.31 -1.2
471,590 - MPMX20_00456 0.47 +0.2
471,663 - MPMX20_00456 0.54 -1.0
471,705 + MPMX20_00456 0.58 -5.3
471,705 + MPMX20_00456 0.58 +1.9
471,713 - MPMX20_00456 0.59 -4.5
471,715 + MPMX20_00456 0.59 -0.2
471,715 - MPMX20_00456 0.59 -0.6
471,723 - MPMX20_00456 0.60 -3.0
471,743 + MPMX20_00456 0.62 -0.8
471,774 + MPMX20_00456 0.65 -1.8
471,784 + MPMX20_00456 0.66 -1.3
471,842 + MPMX20_00456 0.72 -4.8
471,898 - MPMX20_00456 0.78 -0.2
471,928 - MPMX20_00456 0.81 -2.0
471,928 - MPMX20_00456 0.81 +0.3
471,935 + MPMX20_00456 0.81 -0.5
471,993 - MPMX20_00456 0.87 -2.4
472,104 + +0.8
472,104 + -3.0
472,104 + -1.0

Or see this region's nucleotide sequence