Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_022330

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_022325 and TX73_022330 are separated by 169 nucleotidesTX73_022330 and TX73_022335 are separated by 367 nucleotidesTX73_022335 and TX73_022340 overlap by 20 nucleotides TX73_022325: TX73_022325 - phosphoglycerate dehydrogenase, at 4,858,097 to 4,859,686 _022325 TX73_022330: TX73_022330 - phosphoserine transaminase, at 4,859,856 to 4,861,028 _022330 TX73_022335: TX73_022335 - hypothetical protein, at 4,861,396 to 4,861,773 _022335 TX73_022340: TX73_022340 - methyl-accepting chemotaxis protein, at 4,861,754 to 4,863,058 _022340 Position (kb) 4859 4860 4861 4862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4859.702 kb on - strandat 4859.716 kb on + strandat 4859.784 kb on + strandat 4859.805 kb on - strandat 4859.821 kb on + strandat 4859.835 kb on - strandat 4859.836 kb on + strandat 4859.836 kb on + strandat 4859.836 kb on + strandat 4859.838 kb on + strandat 4859.844 kb on - strandat 4859.844 kb on - strandat 4859.844 kb on - strandat 4859.854 kb on + strandat 4859.877 kb on - strandat 4861.032 kb on - strandat 4861.148 kb on - strandat 4861.148 kb on - strandat 4861.167 kb on + strandat 4861.205 kb on - strandat 4861.289 kb on + strandat 4861.297 kb on - strandat 4861.297 kb on - strandat 4861.340 kb on + strandat 4861.345 kb on + strandat 4861.486 kb on + strand, within TX73_022335at 4861.624 kb on - strand, within TX73_022335at 4861.647 kb on - strand, within TX73_022335at 4861.685 kb on - strand, within TX73_022335at 4861.701 kb on + strand, within TX73_022335at 4861.709 kb on + strand, within TX73_022335at 4861.710 kb on + strand, within TX73_022335at 4861.715 kb on - strand, within TX73_022335at 4861.720 kb on - strand, within TX73_022335at 4861.783 kb on - strandat 4861.830 kb on + strandat 4861.838 kb on - strandat 4861.838 kb on - strandat 4861.986 kb on + strand, within TX73_022340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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4,859,702 - -0.8
4,859,716 + -1.7
4,859,784 + -1.2
4,859,805 - -0.8
4,859,821 + -0.9
4,859,835 - -1.4
4,859,836 + -3.4
4,859,836 + +0.4
4,859,836 + -0.9
4,859,838 + -0.8
4,859,844 - +0.4
4,859,844 - +0.3
4,859,844 - +0.7
4,859,854 + +0.1
4,859,877 - +0.1
4,861,032 - -0.3
4,861,148 - +1.8
4,861,148 - -0.0
4,861,167 + +0.4
4,861,205 - -0.6
4,861,289 + -0.2
4,861,297 - -0.4
4,861,297 - +2.3
4,861,340 + -1.0
4,861,345 + +1.3
4,861,486 + TX73_022335 0.24 -1.0
4,861,624 - TX73_022335 0.60 -0.8
4,861,647 - TX73_022335 0.66 -1.9
4,861,685 - TX73_022335 0.76 -1.2
4,861,701 + TX73_022335 0.81 +1.3
4,861,709 + TX73_022335 0.83 -1.0
4,861,710 + TX73_022335 0.83 +1.3
4,861,715 - TX73_022335 0.84 +0.2
4,861,720 - TX73_022335 0.86 -1.7
4,861,783 - -2.2
4,861,830 + -0.2
4,861,838 - -0.7
4,861,838 - +1.1
4,861,986 + TX73_022340 0.18 -0.7

Or see this region's nucleotide sequence