Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001590

Experiment: L-Lactate (C) with 10 mM Sodium Chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001580 and TX73_001585 are separated by 5 nucleotidesTX73_001585 and TX73_001590 are separated by 335 nucleotidesTX73_001590 and TX73_001595 are separated by 41 nucleotidesTX73_001595 and TX73_001600 overlap by 4 nucleotides TX73_001580: TX73_001580 - murein transglycosylase A, at 333,577 to 335,070 _001580 TX73_001585: TX73_001585 - Smr/MutS family protein, at 335,076 to 335,660 _001585 TX73_001590: TX73_001590 - ATP-dependent protease ATPase subunit HslU, at 335,996 to 337,297 _001590 TX73_001595: TX73_001595 - DUF2585 domain-containing protein, at 337,339 to 337,950 _001595 TX73_001600: TX73_001600 - ATP-dependent protease subunit HslV, at 337,947 to 338,516 _001600 Position (kb) 335 336 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 335.011 kb on + strandat 335.043 kb on + strandat 335.046 kb on - strandat 335.050 kb on - strandat 335.052 kb on + strandat 335.054 kb on + strandat 335.077 kb on - strandat 335.122 kb on + strandat 335.136 kb on - strand, within TX73_001585at 335.137 kb on + strand, within TX73_001585at 335.151 kb on + strand, within TX73_001585at 335.151 kb on + strand, within TX73_001585at 335.153 kb on + strand, within TX73_001585at 335.153 kb on + strand, within TX73_001585at 335.169 kb on - strand, within TX73_001585at 335.174 kb on + strand, within TX73_001585at 335.174 kb on + strand, within TX73_001585at 335.182 kb on - strand, within TX73_001585at 335.233 kb on + strand, within TX73_001585at 335.234 kb on - strand, within TX73_001585at 335.234 kb on - strand, within TX73_001585at 335.241 kb on - strand, within TX73_001585at 335.287 kb on - strand, within TX73_001585at 335.303 kb on + strand, within TX73_001585at 335.311 kb on - strand, within TX73_001585at 335.327 kb on - strand, within TX73_001585at 335.332 kb on + strand, within TX73_001585at 335.368 kb on + strand, within TX73_001585at 335.376 kb on - strand, within TX73_001585at 335.399 kb on + strand, within TX73_001585at 335.404 kb on + strand, within TX73_001585at 335.404 kb on + strand, within TX73_001585at 335.412 kb on - strand, within TX73_001585at 335.435 kb on + strand, within TX73_001585at 335.435 kb on + strand, within TX73_001585at 335.440 kb on + strand, within TX73_001585at 335.443 kb on - strand, within TX73_001585at 335.443 kb on - strand, within TX73_001585at 335.458 kb on + strand, within TX73_001585at 335.473 kb on + strand, within TX73_001585at 335.476 kb on - strand, within TX73_001585at 335.491 kb on - strand, within TX73_001585at 335.498 kb on + strand, within TX73_001585at 335.506 kb on - strand, within TX73_001585at 335.514 kb on + strand, within TX73_001585at 335.541 kb on + strand, within TX73_001585at 335.598 kb on + strand, within TX73_001585at 335.598 kb on + strand, within TX73_001585at 335.606 kb on - strandat 335.740 kb on + strandat 335.779 kb on + strandat 335.816 kb on - strandat 335.817 kb on - strandat 335.919 kb on - strandat 335.984 kb on + strandat 335.989 kb on - strandat 336.001 kb on + strandat 336.058 kb on + strandat 336.058 kb on + strandat 336.084 kb on + strandat 336.123 kb on - strandat 336.136 kb on - strand, within TX73_001590at 336.143 kb on + strand, within TX73_001590at 336.161 kb on - strand, within TX73_001590at 336.254 kb on - strand, within TX73_001590at 336.270 kb on - strand, within TX73_001590at 336.281 kb on - strand, within TX73_001590at 336.291 kb on - strand, within TX73_001590at 336.291 kb on - strand, within TX73_001590at 336.293 kb on + strand, within TX73_001590at 336.302 kb on - strand, within TX73_001590at 336.302 kb on - strand, within TX73_001590at 336.328 kb on - strand, within TX73_001590at 336.376 kb on + strand, within TX73_001590at 336.393 kb on - strand, within TX73_001590at 336.421 kb on + strand, within TX73_001590at 336.425 kb on - strand, within TX73_001590at 336.440 kb on - strand, within TX73_001590at 336.449 kb on - strand, within TX73_001590at 336.449 kb on - strand, within TX73_001590at 336.476 kb on - strand, within TX73_001590at 336.487 kb on - strand, within TX73_001590at 336.514 kb on - strand, within TX73_001590at 336.519 kb on - strand, within TX73_001590at 336.541 kb on + strand, within TX73_001590at 336.566 kb on + strand, within TX73_001590at 336.587 kb on - strand, within TX73_001590at 336.603 kb on + strand, within TX73_001590at 336.616 kb on + strand, within TX73_001590at 336.621 kb on + strand, within TX73_001590at 336.621 kb on + strand, within TX73_001590at 336.629 kb on - strand, within TX73_001590at 336.629 kb on - strand, within TX73_001590at 336.650 kb on + strand, within TX73_001590at 336.658 kb on - strand, within TX73_001590at 336.660 kb on + strand, within TX73_001590at 336.684 kb on - strand, within TX73_001590at 336.736 kb on - strand, within TX73_001590at 336.738 kb on + strand, within TX73_001590at 336.793 kb on - strand, within TX73_001590at 336.875 kb on + strand, within TX73_001590at 336.885 kb on + strand, within TX73_001590at 336.885 kb on + strand, within TX73_001590at 336.885 kb on + strand, within TX73_001590at 336.945 kb on + strand, within TX73_001590at 336.965 kb on + strand, within TX73_001590at 336.981 kb on + strand, within TX73_001590at 337.001 kb on + strand, within TX73_001590at 337.064 kb on - strand, within TX73_001590at 337.088 kb on - strand, within TX73_001590at 337.125 kb on - strand, within TX73_001590at 337.176 kb on - strandat 337.181 kb on - strandat 337.205 kb on - strandat 337.248 kb on - strandat 337.254 kb on - strandat 337.293 kb on + strandat 337.305 kb on + strandat 337.305 kb on + strandat 337.305 kb on + strandat 337.305 kb on + strandat 337.313 kb on - strandat 337.313 kb on - strandat 337.313 kb on - strandat 337.313 kb on - strandat 337.313 kb on - strandat 337.384 kb on - strandat 337.418 kb on - strand, within TX73_001595at 337.419 kb on - strand, within TX73_001595at 337.438 kb on + strand, within TX73_001595at 337.446 kb on - strand, within TX73_001595at 337.458 kb on - strand, within TX73_001595at 337.470 kb on + strand, within TX73_001595at 337.470 kb on + strand, within TX73_001595at 337.516 kb on - strand, within TX73_001595at 337.623 kb on + strand, within TX73_001595at 337.623 kb on + strand, within TX73_001595at 337.623 kb on + strand, within TX73_001595at 337.631 kb on - strand, within TX73_001595at 337.631 kb on - strand, within TX73_001595at 337.631 kb on - strand, within TX73_001595at 337.631 kb on - strand, within TX73_001595at 337.642 kb on - strand, within TX73_001595at 337.644 kb on + strand, within TX73_001595at 337.647 kb on - strand, within TX73_001595at 337.652 kb on - strand, within TX73_001595at 337.673 kb on + strand, within TX73_001595at 337.676 kb on - strand, within TX73_001595at 337.676 kb on - strand, within TX73_001595at 337.703 kb on + strand, within TX73_001595at 337.731 kb on - strand, within TX73_001595at 337.751 kb on + strand, within TX73_001595at 337.751 kb on + strand, within TX73_001595at 337.766 kb on - strand, within TX73_001595at 337.790 kb on + strand, within TX73_001595at 337.790 kb on + strand, within TX73_001595at 337.795 kb on + strand, within TX73_001595at 337.795 kb on + strand, within TX73_001595at 337.798 kb on - strand, within TX73_001595at 337.803 kb on - strand, within TX73_001595at 337.819 kb on + strand, within TX73_001595at 337.843 kb on - strand, within TX73_001595at 337.851 kb on - strand, within TX73_001595at 337.867 kb on - strand, within TX73_001595at 337.869 kb on + strand, within TX73_001595at 337.869 kb on + strand, within TX73_001595at 337.869 kb on + strand, within TX73_001595at 337.869 kb on + strand, within TX73_001595at 337.877 kb on - strand, within TX73_001595at 337.934 kb on + strandat 337.934 kb on + strandat 337.939 kb on + strandat 338.008 kb on + strand, within TX73_001600at 338.027 kb on + strand, within TX73_001600at 338.050 kb on + strand, within TX73_001600at 338.050 kb on + strand, within TX73_001600at 338.050 kb on + strand, within TX73_001600at 338.058 kb on - strand, within TX73_001600at 338.095 kb on + strand, within TX73_001600at 338.132 kb on + strand, within TX73_001600at 338.145 kb on + strand, within TX73_001600at 338.163 kb on - strand, within TX73_001600at 338.163 kb on - strand, within TX73_001600at 338.224 kb on + strand, within TX73_001600at 338.226 kb on - strand, within TX73_001600at 338.232 kb on - strand, within TX73_001600at 338.245 kb on + strand, within TX73_001600at 338.248 kb on + strand, within TX73_001600at 338.260 kb on + strand, within TX73_001600at 338.261 kb on - strand, within TX73_001600at 338.266 kb on - strand, within TX73_001600at 338.266 kb on - strand, within TX73_001600at 338.266 kb on - strand, within TX73_001600at 338.266 kb on - strand, within TX73_001600at 338.270 kb on + strand, within TX73_001600at 338.277 kb on - strand, within TX73_001600at 338.278 kb on - strand, within TX73_001600at 338.289 kb on - strand, within TX73_001600at 338.290 kb on + strand, within TX73_001600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) with 10 mM Sodium Chloride
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335,011 + +0.3
335,043 + +1.6
335,046 - -2.0
335,050 - +1.1
335,052 + -0.1
335,054 + -0.8
335,077 - -1.0
335,122 + +0.6
335,136 - TX73_001585 0.10 -1.5
335,137 + TX73_001585 0.10 +0.9
335,151 + TX73_001585 0.13 +0.6
335,151 + TX73_001585 0.13 -0.1
335,153 + TX73_001585 0.13 -2.3
335,153 + TX73_001585 0.13 +1.9
335,169 - TX73_001585 0.16 -0.6
335,174 + TX73_001585 0.17 -1.5
335,174 + TX73_001585 0.17 -2.0
335,182 - TX73_001585 0.18 +0.8
335,233 + TX73_001585 0.27 +1.3
335,234 - TX73_001585 0.27 +0.0
335,234 - TX73_001585 0.27 -0.5
335,241 - TX73_001585 0.28 +1.1
335,287 - TX73_001585 0.36 +0.7
335,303 + TX73_001585 0.39 -1.5
335,311 - TX73_001585 0.40 -0.5
335,327 - TX73_001585 0.43 -0.8
335,332 + TX73_001585 0.44 -0.6
335,368 + TX73_001585 0.50 +0.8
335,376 - TX73_001585 0.51 -1.8
335,399 + TX73_001585 0.55 -2.2
335,404 + TX73_001585 0.56 +0.1
335,404 + TX73_001585 0.56 +2.7
335,412 - TX73_001585 0.57 -0.9
335,435 + TX73_001585 0.61 +0.3
335,435 + TX73_001585 0.61 +0.5
335,440 + TX73_001585 0.62 +0.5
335,443 - TX73_001585 0.63 -0.5
335,443 - TX73_001585 0.63 -0.5
335,458 + TX73_001585 0.65 -1.0
335,473 + TX73_001585 0.68 +1.4
335,476 - TX73_001585 0.68 -0.0
335,491 - TX73_001585 0.71 +0.1
335,498 + TX73_001585 0.72 -1.6
335,506 - TX73_001585 0.74 +1.1
335,514 + TX73_001585 0.75 +0.1
335,541 + TX73_001585 0.79 +0.8
335,598 + TX73_001585 0.89 -1.2
335,598 + TX73_001585 0.89 +2.5
335,606 - +0.7
335,740 + +0.3
335,779 + -1.9
335,816 - -1.5
335,817 - +1.6
335,919 - +0.6
335,984 + -2.2
335,989 - -0.7
336,001 + -0.5
336,058 + -0.5
336,058 + +0.1
336,084 + -1.2
336,123 - -1.2
336,136 - TX73_001590 0.11 +0.7
336,143 + TX73_001590 0.11 +0.7
336,161 - TX73_001590 0.13 +0.3
336,254 - TX73_001590 0.20 -2.1
336,270 - TX73_001590 0.21 -1.6
336,281 - TX73_001590 0.22 +2.9
336,291 - TX73_001590 0.23 +0.1
336,291 - TX73_001590 0.23 -1.0
336,293 + TX73_001590 0.23 -0.6
336,302 - TX73_001590 0.24 +0.3
336,302 - TX73_001590 0.24 +0.7
336,328 - TX73_001590 0.25 -0.6
336,376 + TX73_001590 0.29 -1.6
336,393 - TX73_001590 0.30 +0.2
336,421 + TX73_001590 0.33 -0.0
336,425 - TX73_001590 0.33 -1.6
336,440 - TX73_001590 0.34 -1.7
336,449 - TX73_001590 0.35 +0.5
336,449 - TX73_001590 0.35 -0.7
336,476 - TX73_001590 0.37 +3.2
336,487 - TX73_001590 0.38 -2.0
336,514 - TX73_001590 0.40 +0.3
336,519 - TX73_001590 0.40 -0.1
336,541 + TX73_001590 0.42 -1.1
336,566 + TX73_001590 0.44 +0.3
336,587 - TX73_001590 0.45 +1.0
336,603 + TX73_001590 0.47 -1.8
336,616 + TX73_001590 0.48 +2.2
336,621 + TX73_001590 0.48 -0.9
336,621 + TX73_001590 0.48 +0.5
336,629 - TX73_001590 0.49 -1.0
336,629 - TX73_001590 0.49 +1.6
336,650 + TX73_001590 0.50 -0.0
336,658 - TX73_001590 0.51 +0.1
336,660 + TX73_001590 0.51 -2.0
336,684 - TX73_001590 0.53 -1.1
336,736 - TX73_001590 0.57 +1.4
336,738 + TX73_001590 0.57 -0.8
336,793 - TX73_001590 0.61 -0.2
336,875 + TX73_001590 0.68 -0.2
336,885 + TX73_001590 0.68 -0.8
336,885 + TX73_001590 0.68 -0.5
336,885 + TX73_001590 0.68 +1.3
336,945 + TX73_001590 0.73 -2.5
336,965 + TX73_001590 0.74 +0.5
336,981 + TX73_001590 0.76 -2.0
337,001 + TX73_001590 0.77 -1.5
337,064 - TX73_001590 0.82 +2.4
337,088 - TX73_001590 0.84 -1.8
337,125 - TX73_001590 0.87 -0.5
337,176 - -1.2
337,181 - -2.2
337,205 - -2.5
337,248 - +1.0
337,254 - +2.8
337,293 + +0.0
337,305 + -3.1
337,305 + -1.4
337,305 + +1.2
337,305 + -1.3
337,313 - -1.4
337,313 - +1.5
337,313 - -0.6
337,313 - -1.1
337,313 - +0.9
337,384 - +4.7
337,418 - TX73_001595 0.13 -0.1
337,419 - TX73_001595 0.13 +2.0
337,438 + TX73_001595 0.16 +1.5
337,446 - TX73_001595 0.17 +1.1
337,458 - TX73_001595 0.19 -0.4
337,470 + TX73_001595 0.21 +0.5
337,470 + TX73_001595 0.21 +0.1
337,516 - TX73_001595 0.29 -0.6
337,623 + TX73_001595 0.46 +1.7
337,623 + TX73_001595 0.46 -1.4
337,623 + TX73_001595 0.46 -1.0
337,631 - TX73_001595 0.48 +1.0
337,631 - TX73_001595 0.48 +1.1
337,631 - TX73_001595 0.48 -1.0
337,631 - TX73_001595 0.48 +0.4
337,642 - TX73_001595 0.50 +0.7
337,644 + TX73_001595 0.50 +1.1
337,647 - TX73_001595 0.50 -0.4
337,652 - TX73_001595 0.51 +0.2
337,673 + TX73_001595 0.55 -1.3
337,676 - TX73_001595 0.55 -1.5
337,676 - TX73_001595 0.55 +1.0
337,703 + TX73_001595 0.59 -1.8
337,731 - TX73_001595 0.64 +0.2
337,751 + TX73_001595 0.67 -1.0
337,751 + TX73_001595 0.67 -0.0
337,766 - TX73_001595 0.70 +0.6
337,790 + TX73_001595 0.74 -2.2
337,790 + TX73_001595 0.74 -0.7
337,795 + TX73_001595 0.75 -2.2
337,795 + TX73_001595 0.75 +1.0
337,798 - TX73_001595 0.75 +2.6
337,803 - TX73_001595 0.76 +0.8
337,819 + TX73_001595 0.78 -0.0
337,843 - TX73_001595 0.82 -0.9
337,851 - TX73_001595 0.84 +0.1
337,867 - TX73_001595 0.86 -1.5
337,869 + TX73_001595 0.87 -0.6
337,869 + TX73_001595 0.87 +2.0
337,869 + TX73_001595 0.87 +1.1
337,869 + TX73_001595 0.87 -0.5
337,877 - TX73_001595 0.88 -0.4
337,934 + +0.1
337,934 + +2.7
337,939 + +1.5
338,008 + TX73_001600 0.11 -0.9
338,027 + TX73_001600 0.14 -0.5
338,050 + TX73_001600 0.18 +1.9
338,050 + TX73_001600 0.18 +0.8
338,050 + TX73_001600 0.18 +0.3
338,058 - TX73_001600 0.19 -0.0
338,095 + TX73_001600 0.26 -0.9
338,132 + TX73_001600 0.32 -1.7
338,145 + TX73_001600 0.35 -1.4
338,163 - TX73_001600 0.38 -1.1
338,163 - TX73_001600 0.38 +0.6
338,224 + TX73_001600 0.49 +0.1
338,226 - TX73_001600 0.49 +0.8
338,232 - TX73_001600 0.50 -2.7
338,245 + TX73_001600 0.52 -0.4
338,248 + TX73_001600 0.53 -1.9
338,260 + TX73_001600 0.55 +2.3
338,261 - TX73_001600 0.55 +1.0
338,266 - TX73_001600 0.56 -0.9
338,266 - TX73_001600 0.56 +2.6
338,266 - TX73_001600 0.56 -0.1
338,266 - TX73_001600 0.56 +1.5
338,270 + TX73_001600 0.57 -1.2
338,277 - TX73_001600 0.58 +0.1
338,278 - TX73_001600 0.58 -2.5
338,289 - TX73_001600 0.60 -0.9
338,290 + TX73_001600 0.60 -0.8

Or see this region's nucleotide sequence