Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023845

Experiment: OAcsForEtOH (C); monoculture

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023840 and TX73_023845 are separated by 12 nucleotidesTX73_023845 and TX73_023850 are separated by 265 nucleotides TX73_023840: TX73_023840 - homoserine O-succinyltransferase, at 5,174,704 to 5,175,705 _023840 TX73_023845: TX73_023845 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 5,175,718 to 5,177,022 _023845 TX73_023850: TX73_023850 - long-chain-acyl-CoA synthetase, at 5,177,288 to 5,179,105 _023850 Position (kb) 5175 5176 5177 5178Strain fitness (log2 ratio) -1 0 1at 5174.724 kb on + strandat 5174.781 kb on - strandat 5174.781 kb on - strandat 5174.901 kb on + strand, within TX73_023840at 5174.967 kb on + strand, within TX73_023840at 5175.013 kb on + strand, within TX73_023840at 5175.036 kb on - strand, within TX73_023840at 5175.061 kb on + strand, within TX73_023840at 5175.061 kb on + strand, within TX73_023840at 5175.083 kb on + strand, within TX73_023840at 5175.091 kb on - strand, within TX73_023840at 5175.122 kb on + strand, within TX73_023840at 5175.151 kb on + strand, within TX73_023840at 5175.185 kb on + strand, within TX73_023840at 5175.185 kb on + strand, within TX73_023840at 5175.188 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.194 kb on + strand, within TX73_023840at 5175.220 kb on + strand, within TX73_023840at 5175.221 kb on - strand, within TX73_023840at 5175.222 kb on + strand, within TX73_023840at 5175.223 kb on - strand, within TX73_023840at 5175.230 kb on - strand, within TX73_023840at 5175.246 kb on - strand, within TX73_023840at 5175.263 kb on + strand, within TX73_023840at 5175.268 kb on + strand, within TX73_023840at 5175.361 kb on - strand, within TX73_023840at 5175.363 kb on + strand, within TX73_023840at 5175.371 kb on - strand, within TX73_023840at 5175.371 kb on - strand, within TX73_023840at 5175.422 kb on + strand, within TX73_023840at 5175.472 kb on - strand, within TX73_023840at 5175.477 kb on + strand, within TX73_023840at 5175.482 kb on + strand, within TX73_023840at 5175.490 kb on + strand, within TX73_023840at 5175.558 kb on + strand, within TX73_023840at 5175.590 kb on + strand, within TX73_023840at 5175.600 kb on + strand, within TX73_023840at 5175.618 kb on + strandat 5175.627 kb on + strandat 5175.631 kb on - strandat 5175.660 kb on + strandat 5175.660 kb on + strandat 5175.660 kb on + strandat 5175.668 kb on - strandat 5175.673 kb on + strandat 5175.678 kb on + strandat 5175.678 kb on + strandat 5175.678 kb on + strandat 5175.678 kb on + strandat 5175.683 kb on + strandat 5175.686 kb on - strandat 5175.686 kb on - strandat 5175.691 kb on - strandat 5175.757 kb on - strandat 5175.801 kb on + strandat 5175.801 kb on + strandat 5175.801 kb on + strandat 5175.845 kb on + strandat 5175.896 kb on - strand, within TX73_023845at 5175.959 kb on + strand, within TX73_023845at 5176.014 kb on + strand, within TX73_023845at 5176.023 kb on - strand, within TX73_023845at 5176.073 kb on + strand, within TX73_023845at 5176.183 kb on - strand, within TX73_023845at 5176.209 kb on + strand, within TX73_023845at 5176.228 kb on + strand, within TX73_023845at 5176.255 kb on - strand, within TX73_023845at 5176.266 kb on + strand, within TX73_023845at 5176.274 kb on - strand, within TX73_023845at 5176.280 kb on + strand, within TX73_023845at 5176.288 kb on - strand, within TX73_023845at 5176.288 kb on - strand, within TX73_023845at 5176.288 kb on - strand, within TX73_023845at 5176.313 kb on - strand, within TX73_023845at 5176.314 kb on + strand, within TX73_023845at 5176.386 kb on + strand, within TX73_023845at 5176.403 kb on + strand, within TX73_023845at 5176.407 kb on + strand, within TX73_023845at 5176.434 kb on - strand, within TX73_023845at 5176.434 kb on - strand, within TX73_023845at 5176.492 kb on + strand, within TX73_023845at 5176.541 kb on - strand, within TX73_023845at 5176.548 kb on - strand, within TX73_023845at 5176.548 kb on - strand, within TX73_023845at 5176.609 kb on - strand, within TX73_023845at 5176.633 kb on - strand, within TX73_023845at 5176.652 kb on + strand, within TX73_023845at 5176.660 kb on - strand, within TX73_023845at 5176.660 kb on - strand, within TX73_023845at 5176.686 kb on + strand, within TX73_023845at 5176.686 kb on + strand, within TX73_023845at 5176.697 kb on + strand, within TX73_023845at 5176.700 kb on + strand, within TX73_023845at 5176.700 kb on + strand, within TX73_023845at 5176.705 kb on - strand, within TX73_023845at 5176.708 kb on - strand, within TX73_023845at 5176.722 kb on + strand, within TX73_023845at 5176.816 kb on - strand, within TX73_023845at 5176.854 kb on - strand, within TX73_023845at 5176.878 kb on - strand, within TX73_023845at 5176.897 kb on - strandat 5176.928 kb on + strandat 5176.940 kb on + strandat 5176.948 kb on - strandat 5176.948 kb on - strandat 5176.977 kb on + strandat 5176.977 kb on + strandat 5177.070 kb on + strandat 5177.078 kb on - strandat 5177.078 kb on - strandat 5177.205 kb on + strandat 5177.292 kb on + strandat 5177.441 kb on - strandat 5177.485 kb on + strand, within TX73_023850at 5177.493 kb on - strand, within TX73_023850at 5177.528 kb on + strand, within TX73_023850at 5177.566 kb on - strand, within TX73_023850at 5177.621 kb on + strand, within TX73_023850at 5177.628 kb on - strand, within TX73_023850at 5177.635 kb on - strand, within TX73_023850at 5177.655 kb on - strand, within TX73_023850at 5177.660 kb on - strand, within TX73_023850at 5177.667 kb on - strand, within TX73_023850at 5177.738 kb on + strand, within TX73_023850at 5177.738 kb on + strand, within TX73_023850at 5177.748 kb on + strand, within TX73_023850at 5177.748 kb on + strand, within TX73_023850at 5177.748 kb on + strand, within TX73_023850at 5177.756 kb on - strand, within TX73_023850at 5177.761 kb on - strand, within TX73_023850at 5177.784 kb on - strand, within TX73_023850at 5177.799 kb on - strand, within TX73_023850at 5177.880 kb on + strand, within TX73_023850at 5177.903 kb on + strand, within TX73_023850at 5177.910 kb on + strand, within TX73_023850at 5177.910 kb on - strand, within TX73_023850at 5177.919 kb on - strand, within TX73_023850at 5177.937 kb on - strand, within TX73_023850at 5177.968 kb on - strand, within TX73_023850at 5177.973 kb on - strand, within TX73_023850at 5178.011 kb on - strand, within TX73_023850

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Per-strain Table

Position Strand Gene LocusTag Fraction OAcsForEtOH (C); monoculture
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5,174,724 + -0.7
5,174,781 - -0.3
5,174,781 - +0.2
5,174,901 + TX73_023840 0.20 -0.2
5,174,967 + TX73_023840 0.26 +0.3
5,175,013 + TX73_023840 0.31 -0.5
5,175,036 - TX73_023840 0.33 +0.2
5,175,061 + TX73_023840 0.36 +1.1
5,175,061 + TX73_023840 0.36 +0.6
5,175,083 + TX73_023840 0.38 -0.0
5,175,091 - TX73_023840 0.39 +0.0
5,175,122 + TX73_023840 0.42 +0.3
5,175,151 + TX73_023840 0.45 -0.5
5,175,185 + TX73_023840 0.48 +0.8
5,175,185 + TX73_023840 0.48 -1.2
5,175,188 - TX73_023840 0.48 +0.3
5,175,193 - TX73_023840 0.49 +0.1
5,175,193 - TX73_023840 0.49 +0.3
5,175,193 - TX73_023840 0.49 +0.5
5,175,193 - TX73_023840 0.49 +0.2
5,175,194 + TX73_023840 0.49 -0.4
5,175,220 + TX73_023840 0.51 +0.6
5,175,221 - TX73_023840 0.52 -0.3
5,175,222 + TX73_023840 0.52 +0.2
5,175,223 - TX73_023840 0.52 +1.5
5,175,230 - TX73_023840 0.52 -1.4
5,175,246 - TX73_023840 0.54 +0.4
5,175,263 + TX73_023840 0.56 -0.4
5,175,268 + TX73_023840 0.56 +0.6
5,175,361 - TX73_023840 0.66 -0.3
5,175,363 + TX73_023840 0.66 +0.2
5,175,371 - TX73_023840 0.67 -0.1
5,175,371 - TX73_023840 0.67 +0.0
5,175,422 + TX73_023840 0.72 -0.2
5,175,472 - TX73_023840 0.77 -0.0
5,175,477 + TX73_023840 0.77 -0.3
5,175,482 + TX73_023840 0.78 +0.1
5,175,490 + TX73_023840 0.78 -0.1
5,175,558 + TX73_023840 0.85 +0.3
5,175,590 + TX73_023840 0.88 +0.1
5,175,600 + TX73_023840 0.89 -0.3
5,175,618 + +0.1
5,175,627 + +1.1
5,175,631 - +0.1
5,175,660 + +0.1
5,175,660 + +0.5
5,175,660 + +0.2
5,175,668 - -0.5
5,175,673 + -0.2
5,175,678 + -0.2
5,175,678 + +0.1
5,175,678 + +0.4
5,175,678 + -0.0
5,175,683 + -1.4
5,175,686 - -0.5
5,175,686 - +0.2
5,175,691 - +0.2
5,175,757 - +0.7
5,175,801 + -1.0
5,175,801 + -0.0
5,175,801 + +0.4
5,175,845 + +0.1
5,175,896 - TX73_023845 0.14 -0.3
5,175,959 + TX73_023845 0.18 +0.1
5,176,014 + TX73_023845 0.23 -0.1
5,176,023 - TX73_023845 0.23 -0.1
5,176,073 + TX73_023845 0.27 +0.1
5,176,183 - TX73_023845 0.36 +1.0
5,176,209 + TX73_023845 0.38 -0.3
5,176,228 + TX73_023845 0.39 -0.8
5,176,255 - TX73_023845 0.41 +0.5
5,176,266 + TX73_023845 0.42 -0.4
5,176,274 - TX73_023845 0.43 -0.3
5,176,280 + TX73_023845 0.43 -0.3
5,176,288 - TX73_023845 0.44 +1.3
5,176,288 - TX73_023845 0.44 +0.3
5,176,288 - TX73_023845 0.44 +0.0
5,176,313 - TX73_023845 0.46 +0.1
5,176,314 + TX73_023845 0.46 +0.8
5,176,386 + TX73_023845 0.51 +1.2
5,176,403 + TX73_023845 0.52 -0.1
5,176,407 + TX73_023845 0.53 +0.3
5,176,434 - TX73_023845 0.55 +0.4
5,176,434 - TX73_023845 0.55 -0.4
5,176,492 + TX73_023845 0.59 -0.4
5,176,541 - TX73_023845 0.63 -0.0
5,176,548 - TX73_023845 0.64 +0.1
5,176,548 - TX73_023845 0.64 -0.6
5,176,609 - TX73_023845 0.68 +0.7
5,176,633 - TX73_023845 0.70 +0.3
5,176,652 + TX73_023845 0.72 -0.7
5,176,660 - TX73_023845 0.72 +0.2
5,176,660 - TX73_023845 0.72 +0.4
5,176,686 + TX73_023845 0.74 -0.6
5,176,686 + TX73_023845 0.74 +0.0
5,176,697 + TX73_023845 0.75 +1.2
5,176,700 + TX73_023845 0.75 +0.4
5,176,700 + TX73_023845 0.75 -0.3
5,176,705 - TX73_023845 0.76 +0.2
5,176,708 - TX73_023845 0.76 +0.6
5,176,722 + TX73_023845 0.77 -0.6
5,176,816 - TX73_023845 0.84 -0.0
5,176,854 - TX73_023845 0.87 -0.7
5,176,878 - TX73_023845 0.89 -0.1
5,176,897 - +0.5
5,176,928 + +0.1
5,176,940 + +0.4
5,176,948 - -0.3
5,176,948 - +0.4
5,176,977 + -0.3
5,176,977 + -0.2
5,177,070 + -0.4
5,177,078 - -0.7
5,177,078 - +0.2
5,177,205 + -0.2
5,177,292 + -0.8
5,177,441 - +0.7
5,177,485 + TX73_023850 0.11 -0.1
5,177,493 - TX73_023850 0.11 -0.4
5,177,528 + TX73_023850 0.13 +0.0
5,177,566 - TX73_023850 0.15 +0.2
5,177,621 + TX73_023850 0.18 +0.1
5,177,628 - TX73_023850 0.19 +0.6
5,177,635 - TX73_023850 0.19 -0.4
5,177,655 - TX73_023850 0.20 -0.0
5,177,660 - TX73_023850 0.20 -0.2
5,177,667 - TX73_023850 0.21 -0.3
5,177,738 + TX73_023850 0.25 +0.9
5,177,738 + TX73_023850 0.25 +0.6
5,177,748 + TX73_023850 0.25 +0.2
5,177,748 + TX73_023850 0.25 +0.1
5,177,748 + TX73_023850 0.25 -1.2
5,177,756 - TX73_023850 0.26 +0.1
5,177,761 - TX73_023850 0.26 -0.3
5,177,784 - TX73_023850 0.27 +0.8
5,177,799 - TX73_023850 0.28 +0.2
5,177,880 + TX73_023850 0.33 -0.5
5,177,903 + TX73_023850 0.34 +0.6
5,177,910 + TX73_023850 0.34 +0.5
5,177,910 - TX73_023850 0.34 +0.4
5,177,919 - TX73_023850 0.35 -0.8
5,177,937 - TX73_023850 0.36 -0.1
5,177,968 - TX73_023850 0.37 -0.0
5,177,973 - TX73_023850 0.38 +0.6
5,178,011 - TX73_023850 0.40 -0.3

Or see this region's nucleotide sequence