Experiment: OAcsForEtOH (C); monoculture
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_020035 and TX73_020040 are separated by 223 nucleotides TX73_020040 and TX73_020045 are separated by 0 nucleotides TX73_020045 and TX73_020050 are separated by 72 nucleotides
TX73_020035: TX73_020035 - caspase family protein, at 4,365,769 to 4,367,226
_020035
TX73_020040: TX73_020040 - GNAT family N-acetyltransferase, at 4,367,450 to 4,368,610
_020040
TX73_020045: TX73_020045 - DsbA family oxidoreductase, at 4,368,611 to 4,369,276
_020045
TX73_020050: TX73_020050 - helix-turn-helix domain-containing protein, at 4,369,349 to 4,370,170
_020050
Position (kb) 4367
4368
4369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4366.471 kb on + strand, within TX73_020035 at 4366.501 kb on + strand, within TX73_020035 at 4366.509 kb on - strand, within TX73_020035 at 4366.547 kb on - strand, within TX73_020035 at 4366.595 kb on + strand, within TX73_020035 at 4366.595 kb on + strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.603 kb on - strand, within TX73_020035 at 4366.608 kb on - strand, within TX73_020035 at 4366.612 kb on + strand, within TX73_020035 at 4366.613 kb on + strand, within TX73_020035 at 4366.620 kb on + strand, within TX73_020035 at 4366.621 kb on - strand, within TX73_020035 at 4366.621 kb on - strand, within TX73_020035 at 4366.631 kb on - strand, within TX73_020035 at 4366.633 kb on + strand, within TX73_020035 at 4366.647 kb on - strand, within TX73_020035 at 4366.648 kb on - strand, within TX73_020035 at 4366.713 kb on + strand, within TX73_020035 at 4366.720 kb on + strand, within TX73_020035 at 4366.721 kb on - strand, within TX73_020035 at 4366.728 kb on - strand, within TX73_020035 at 4366.728 kb on - strand, within TX73_020035 at 4366.738 kb on - strand, within TX73_020035 at 4366.757 kb on - strand, within TX73_020035 at 4366.798 kb on - strand, within TX73_020035 at 4366.800 kb on + strand, within TX73_020035 at 4366.800 kb on + strand, within TX73_020035 at 4366.808 kb on - strand, within TX73_020035 at 4366.808 kb on - strand, within TX73_020035 at 4366.808 kb on - strand, within TX73_020035 at 4366.808 kb on - strand, within TX73_020035 at 4366.813 kb on - strand, within TX73_020035 at 4366.814 kb on + strand, within TX73_020035 at 4366.816 kb on + strand, within TX73_020035 at 4366.822 kb on - strand, within TX73_020035 at 4366.856 kb on - strand, within TX73_020035 at 4366.928 kb on + strand, within TX73_020035 at 4366.928 kb on + strand, within TX73_020035 at 4366.928 kb on + strand, within TX73_020035 at 4366.928 kb on + strand, within TX73_020035 at 4366.936 kb on - strand, within TX73_020035 at 4366.936 kb on - strand, within TX73_020035 at 4366.936 kb on - strand, within TX73_020035 at 4366.936 kb on - strand, within TX73_020035 at 4366.959 kb on - strand, within TX73_020035 at 4366.984 kb on - strand, within TX73_020035 at 4366.994 kb on + strand, within TX73_020035 at 4367.004 kb on + strand, within TX73_020035 at 4367.004 kb on + strand, within TX73_020035 at 4367.026 kb on - strand, within TX73_020035 at 4367.028 kb on + strand, within TX73_020035 at 4367.071 kb on - strand, within TX73_020035 at 4367.073 kb on + strand, within TX73_020035 at 4367.080 kb on - strand, within TX73_020035 at 4367.081 kb on + strand at 4367.090 kb on + strand at 4367.095 kb on + strand at 4367.098 kb on - strand at 4367.098 kb on - strand at 4367.101 kb on + strand at 4367.108 kb on - strand at 4367.129 kb on + strand at 4367.152 kb on - strand at 4367.158 kb on + strand at 4367.171 kb on + strand at 4367.174 kb on + strand at 4367.174 kb on + strand at 4367.182 kb on - strand at 4367.204 kb on + strand at 4367.206 kb on + strand at 4367.206 kb on + strand at 4367.212 kb on - strand at 4367.214 kb on - strand at 4367.214 kb on - strand at 4367.223 kb on + strand at 4367.261 kb on - strand at 4367.287 kb on - strand at 4367.287 kb on - strand at 4367.305 kb on + strand at 4367.305 kb on + strand at 4367.379 kb on - strand at 4367.384 kb on + strand at 4367.390 kb on + strand at 4367.391 kb on + strand at 4367.398 kb on - strand at 4367.398 kb on - strand at 4367.416 kb on - strand at 4367.431 kb on - strand at 4367.433 kb on + strand at 4367.440 kb on + strand at 4367.441 kb on - strand at 4367.441 kb on - strand at 4367.447 kb on + strand at 4367.453 kb on + strand at 4367.461 kb on + strand at 4367.474 kb on - strand at 4367.498 kb on + strand at 4367.511 kb on - strand at 4367.514 kb on + strand at 4367.520 kb on + strand at 4367.533 kb on + strand at 4367.541 kb on - strand at 4367.541 kb on - strand at 4367.565 kb on + strand at 4367.601 kb on + strand, within TX73_020040 at 4367.627 kb on - strand, within TX73_020040 at 4367.689 kb on + strand, within TX73_020040 at 4367.749 kb on + strand, within TX73_020040 at 4367.749 kb on + strand, within TX73_020040 at 4367.749 kb on + strand, within TX73_020040 at 4367.749 kb on + strand, within TX73_020040 at 4367.757 kb on - strand, within TX73_020040 at 4367.827 kb on - strand, within TX73_020040 at 4367.852 kb on - strand, within TX73_020040 at 4367.859 kb on + strand, within TX73_020040 at 4367.859 kb on + strand, within TX73_020040 at 4367.859 kb on + strand, within TX73_020040 at 4367.859 kb on + strand, within TX73_020040 at 4367.865 kb on - strand, within TX73_020040 at 4367.867 kb on - strand, within TX73_020040 at 4367.867 kb on - strand, within TX73_020040 at 4367.867 kb on - strand, within TX73_020040 at 4367.867 kb on - strand, within TX73_020040 at 4367.930 kb on - strand, within TX73_020040 at 4367.931 kb on + strand, within TX73_020040 at 4367.938 kb on - strand, within TX73_020040 at 4367.942 kb on + strand, within TX73_020040 at 4367.966 kb on - strand, within TX73_020040 at 4368.057 kb on + strand, within TX73_020040 at 4368.065 kb on - strand, within TX73_020040 at 4368.065 kb on - strand, within TX73_020040 at 4368.090 kb on - strand, within TX73_020040 at 4368.130 kb on + strand, within TX73_020040 at 4368.182 kb on - strand, within TX73_020040 at 4368.254 kb on - strand, within TX73_020040 at 4368.281 kb on - strand, within TX73_020040 at 4368.384 kb on + strand, within TX73_020040 at 4368.394 kb on + strand, within TX73_020040 at 4368.463 kb on + strand, within TX73_020040 at 4368.498 kb on + strand at 4368.517 kb on + strand at 4368.639 kb on + strand at 4368.672 kb on + strand at 4368.678 kb on - strand, within TX73_020045 at 4368.692 kb on - strand, within TX73_020045 at 4368.704 kb on - strand, within TX73_020045 at 4368.727 kb on - strand, within TX73_020045 at 4368.759 kb on - strand, within TX73_020045 at 4368.773 kb on - strand, within TX73_020045 at 4368.782 kb on + strand, within TX73_020045 at 4368.856 kb on + strand, within TX73_020045 at 4368.856 kb on + strand, within TX73_020045 at 4368.856 kb on + strand, within TX73_020045 at 4368.874 kb on - strand, within TX73_020045 at 4368.997 kb on + strand, within TX73_020045 at 4369.005 kb on - strand, within TX73_020045 at 4369.036 kb on - strand, within TX73_020045 at 4369.131 kb on - strand, within TX73_020045 at 4369.168 kb on - strand, within TX73_020045 at 4369.220 kb on - strand at 4369.243 kb on - strand at 4369.269 kb on - strand at 4369.269 kb on - strand at 4369.307 kb on + strand at 4369.307 kb on + strand at 4369.307 kb on + strand at 4369.315 kb on - strand at 4369.315 kb on - strand at 4369.317 kb on + strand at 4369.323 kb on - strand at 4369.325 kb on - strand at 4369.340 kb on - strand at 4369.342 kb on + strand at 4369.347 kb on + strand at 4369.347 kb on + strand at 4369.355 kb on - strand at 4369.355 kb on - strand at 4369.355 kb on - strand at 4369.355 kb on - strand at 4369.355 kb on - strand at 4369.355 kb on - strand at 4369.440 kb on - strand, within TX73_020050 at 4369.457 kb on + strand, within TX73_020050 at 4369.459 kb on + strand, within TX73_020050 at 4369.478 kb on + strand, within TX73_020050 at 4369.489 kb on - strand, within TX73_020050 at 4369.494 kb on - strand, within TX73_020050 at 4369.573 kb on + strand, within TX73_020050 at 4369.575 kb on + strand, within TX73_020050 at 4369.583 kb on - strand, within TX73_020050 at 4369.602 kb on - strand, within TX73_020050 at 4369.602 kb on - strand, within TX73_020050 at 4369.602 kb on - strand, within TX73_020050 at 4369.610 kb on + strand, within TX73_020050
Per-strain Table
Position Strand Gene LocusTag Fraction OAcsForEtOH (C); monoculture remove 4,366,471 + TX73_020035 0.48 +0.4 4,366,501 + TX73_020035 0.50 -0.2 4,366,509 - TX73_020035 0.51 -0.5 4,366,547 - TX73_020035 0.53 -0.1 4,366,595 + TX73_020035 0.57 +0.6 4,366,595 + TX73_020035 0.57 +0.4 4,366,603 - TX73_020035 0.57 -0.3 4,366,603 - TX73_020035 0.57 +0.3 4,366,603 - TX73_020035 0.57 +0.8 4,366,603 - TX73_020035 0.57 +0.3 4,366,603 - TX73_020035 0.57 +0.3 4,366,603 - TX73_020035 0.57 +0.6 4,366,603 - TX73_020035 0.57 +0.7 4,366,603 - TX73_020035 0.57 -0.8 4,366,608 - TX73_020035 0.58 +0.3 4,366,612 + TX73_020035 0.58 -0.8 4,366,613 + TX73_020035 0.58 -0.1 4,366,620 + TX73_020035 0.58 +0.2 4,366,621 - TX73_020035 0.58 -0.1 4,366,621 - TX73_020035 0.58 +0.7 4,366,631 - TX73_020035 0.59 -0.1 4,366,633 + TX73_020035 0.59 +0.5 4,366,647 - TX73_020035 0.60 +0.9 4,366,648 - TX73_020035 0.60 +0.2 4,366,713 + TX73_020035 0.65 -0.2 4,366,720 + TX73_020035 0.65 -1.1 4,366,721 - TX73_020035 0.65 +0.2 4,366,728 - TX73_020035 0.66 -0.4 4,366,728 - TX73_020035 0.66 -0.4 4,366,738 - TX73_020035 0.66 -0.2 4,366,757 - TX73_020035 0.68 +0.1 4,366,798 - TX73_020035 0.71 +0.7 4,366,800 + TX73_020035 0.71 +0.0 4,366,800 + TX73_020035 0.71 +0.3 4,366,808 - TX73_020035 0.71 -0.3 4,366,808 - TX73_020035 0.71 -0.1 4,366,808 - TX73_020035 0.71 -0.6 4,366,808 - TX73_020035 0.71 -1.2 4,366,813 - TX73_020035 0.72 +0.2 4,366,814 + TX73_020035 0.72 +0.3 4,366,816 + TX73_020035 0.72 -0.0 4,366,822 - TX73_020035 0.72 -1.1 4,366,856 - TX73_020035 0.75 +0.1 4,366,928 + TX73_020035 0.79 -0.0 4,366,928 + TX73_020035 0.79 -0.9 4,366,928 + TX73_020035 0.79 +1.3 4,366,928 + TX73_020035 0.79 +0.7 4,366,936 - TX73_020035 0.80 +0.3 4,366,936 - TX73_020035 0.80 -0.1 4,366,936 - TX73_020035 0.80 -0.5 4,366,936 - TX73_020035 0.80 +0.1 4,366,959 - TX73_020035 0.82 -0.1 4,366,984 - TX73_020035 0.83 -0.1 4,366,994 + TX73_020035 0.84 -0.7 4,367,004 + TX73_020035 0.85 +0.3 4,367,004 + TX73_020035 0.85 +0.4 4,367,026 - TX73_020035 0.86 +0.3 4,367,028 + TX73_020035 0.86 +0.1 4,367,071 - TX73_020035 0.89 -0.6 4,367,073 + TX73_020035 0.89 -0.4 4,367,080 - TX73_020035 0.90 +0.1 4,367,081 + +0.3 4,367,090 + +0.2 4,367,095 + +0.2 4,367,098 - -0.7 4,367,098 - -0.1 4,367,101 + +0.2 4,367,108 - +0.4 4,367,129 + +0.2 4,367,152 - -0.5 4,367,158 + -0.0 4,367,171 + -0.0 4,367,174 + -0.2 4,367,174 + +0.1 4,367,182 - +0.4 4,367,204 + +0.1 4,367,206 + -0.9 4,367,206 + -0.6 4,367,212 - +2.3 4,367,214 - +0.3 4,367,214 - -0.1 4,367,223 + -0.0 4,367,261 - +0.0 4,367,287 - +0.2 4,367,287 - -0.3 4,367,305 + +0.2 4,367,305 + -0.4 4,367,379 - -0.2 4,367,384 + +0.9 4,367,390 + +0.6 4,367,391 + -0.8 4,367,398 - -0.1 4,367,398 - -0.6 4,367,416 - +0.2 4,367,431 - -0.0 4,367,433 + +0.1 4,367,440 + +0.3 4,367,441 - -0.0 4,367,441 - -0.1 4,367,447 + +0.1 4,367,453 + -0.2 4,367,461 + -0.6 4,367,474 - +1.0 4,367,498 + +1.2 4,367,511 - +0.6 4,367,514 + +0.6 4,367,520 + +0.8 4,367,533 + +0.1 4,367,541 - +0.4 4,367,541 - +0.5 4,367,565 + +0.8 4,367,601 + TX73_020040 0.13 +0.9 4,367,627 - TX73_020040 0.15 +0.9 4,367,689 + TX73_020040 0.21 +0.6 4,367,749 + TX73_020040 0.26 +0.7 4,367,749 + TX73_020040 0.26 +0.7 4,367,749 + TX73_020040 0.26 -0.0 4,367,749 + TX73_020040 0.26 +0.5 4,367,757 - TX73_020040 0.26 +1.1 4,367,827 - TX73_020040 0.32 +0.4 4,367,852 - TX73_020040 0.35 +0.9 4,367,859 + TX73_020040 0.35 +0.5 4,367,859 + TX73_020040 0.35 +1.4 4,367,859 + TX73_020040 0.35 +0.6 4,367,859 + TX73_020040 0.35 +0.6 4,367,865 - TX73_020040 0.36 +0.7 4,367,867 - TX73_020040 0.36 +0.3 4,367,867 - TX73_020040 0.36 -0.0 4,367,867 - TX73_020040 0.36 +1.1 4,367,867 - TX73_020040 0.36 +1.2 4,367,930 - TX73_020040 0.41 +1.1 4,367,931 + TX73_020040 0.41 +0.6 4,367,938 - TX73_020040 0.42 +0.8 4,367,942 + TX73_020040 0.42 +0.7 4,367,966 - TX73_020040 0.44 +0.4 4,368,057 + TX73_020040 0.52 +0.2 4,368,065 - TX73_020040 0.53 +0.8 4,368,065 - TX73_020040 0.53 +0.6 4,368,090 - TX73_020040 0.55 +1.0 4,368,130 + TX73_020040 0.59 -0.0 4,368,182 - TX73_020040 0.63 +1.2 4,368,254 - TX73_020040 0.69 +0.2 4,368,281 - TX73_020040 0.72 +0.3 4,368,384 + TX73_020040 0.80 +0.8 4,368,394 + TX73_020040 0.81 +0.3 4,368,463 + TX73_020040 0.87 +0.4 4,368,498 + +0.9 4,368,517 + -0.9 4,368,639 + -0.7 4,368,672 + -0.3 4,368,678 - TX73_020045 0.10 -0.2 4,368,692 - TX73_020045 0.12 -0.2 4,368,704 - TX73_020045 0.14 +0.3 4,368,727 - TX73_020045 0.17 -0.1 4,368,759 - TX73_020045 0.22 -0.5 4,368,773 - TX73_020045 0.24 -0.0 4,368,782 + TX73_020045 0.26 -0.5 4,368,856 + TX73_020045 0.37 -0.5 4,368,856 + TX73_020045 0.37 +0.4 4,368,856 + TX73_020045 0.37 -0.1 4,368,874 - TX73_020045 0.39 +0.1 4,368,997 + TX73_020045 0.58 +1.3 4,369,005 - TX73_020045 0.59 -0.1 4,369,036 - TX73_020045 0.64 +0.8 4,369,131 - TX73_020045 0.78 +0.7 4,369,168 - TX73_020045 0.84 -1.0 4,369,220 - +0.6 4,369,243 - -1.2 4,369,269 - -0.3 4,369,269 - -0.1 4,369,307 + -1.0 4,369,307 + -0.7 4,369,307 + -0.8 4,369,315 - -1.0 4,369,315 - +0.3 4,369,317 + +0.1 4,369,323 - +0.6 4,369,325 - -0.9 4,369,340 - -0.1 4,369,342 + +0.5 4,369,347 + -0.5 4,369,347 + +0.9 4,369,355 - +0.4 4,369,355 - -0.8 4,369,355 - -2.1 4,369,355 - +0.2 4,369,355 - +0.1 4,369,355 - -0.4 4,369,440 - TX73_020050 0.11 -0.6 4,369,457 + TX73_020050 0.13 +0.4 4,369,459 + TX73_020050 0.13 -0.4 4,369,478 + TX73_020050 0.16 -0.1 4,369,489 - TX73_020050 0.17 +0.2 4,369,494 - TX73_020050 0.18 -1.0 4,369,573 + TX73_020050 0.27 +0.1 4,369,575 + TX73_020050 0.27 +0.7 4,369,583 - TX73_020050 0.28 +0.1 4,369,602 - TX73_020050 0.31 -0.3 4,369,602 - TX73_020050 0.31 +0.7 4,369,602 - TX73_020050 0.31 +0.4 4,369,610 + TX73_020050 0.32 +0.1
Or see this region's nucleotide sequence