Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003730

Experiment: OAcsForEtOH (C); monoculture

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003720 and TX73_003725 are separated by 1 nucleotidesTX73_003725 and TX73_003730 are separated by 63 nucleotidesTX73_003730 and TX73_003735 are separated by 11 nucleotidesTX73_003735 and TX73_003740 overlap by 4 nucleotides TX73_003720: TX73_003720 - adenosylcobinamide-phosphate synthase CbiB, at 792,735 to 793,706 _003720 TX73_003725: TX73_003725 - ABC transporter substrate-binding protein, at 793,708 to 794,520 _003725 TX73_003730: TX73_003730 - threonine-phosphate decarboxylase CobD, at 794,584 to 795,573 _003730 TX73_003735: TX73_003735 - ABC transporter ATP-binding protein, at 795,585 to 796,364 _003735 TX73_003740: TX73_003740 - iron ABC transporter permease, at 796,361 to 797,386 _003740 Position (kb) 794 795 796Strain fitness (log2 ratio) -2 -1 0 1at 793.685 kb on - strandat 793.731 kb on - strandat 793.744 kb on + strandat 793.828 kb on + strand, within TX73_003725at 793.835 kb on + strand, within TX73_003725at 793.840 kb on + strand, within TX73_003725at 793.841 kb on - strand, within TX73_003725at 793.845 kb on + strand, within TX73_003725at 793.848 kb on - strand, within TX73_003725at 793.852 kb on + strand, within TX73_003725at 793.853 kb on - strand, within TX73_003725at 793.853 kb on - strand, within TX73_003725at 793.853 kb on - strand, within TX73_003725at 793.934 kb on - strand, within TX73_003725at 793.956 kb on + strand, within TX73_003725at 793.973 kb on + strand, within TX73_003725at 793.975 kb on - strand, within TX73_003725at 793.994 kb on - strand, within TX73_003725at 793.999 kb on - strand, within TX73_003725at 793.999 kb on - strand, within TX73_003725at 794.001 kb on - strand, within TX73_003725at 794.001 kb on - strand, within TX73_003725at 794.008 kb on + strand, within TX73_003725at 794.008 kb on + strand, within TX73_003725at 794.008 kb on + strand, within TX73_003725at 794.008 kb on + strand, within TX73_003725at 794.011 kb on - strand, within TX73_003725at 794.016 kb on - strand, within TX73_003725at 794.031 kb on - strand, within TX73_003725at 794.031 kb on - strand, within TX73_003725at 794.103 kb on - strand, within TX73_003725at 794.105 kb on + strand, within TX73_003725at 794.154 kb on - strand, within TX73_003725at 794.276 kb on - strand, within TX73_003725at 794.309 kb on + strand, within TX73_003725at 794.318 kb on - strand, within TX73_003725at 794.318 kb on - strand, within TX73_003725at 794.321 kb on + strand, within TX73_003725at 794.354 kb on - strand, within TX73_003725at 794.388 kb on + strand, within TX73_003725at 794.402 kb on - strand, within TX73_003725at 794.439 kb on - strandat 794.447 kb on + strandat 795.551 kb on - strandat 795.566 kb on - strandat 795.573 kb on - strandat 795.618 kb on + strandat 795.621 kb on - strandat 795.621 kb on - strandat 795.626 kb on - strandat 795.696 kb on + strand, within TX73_003735at 795.696 kb on + strand, within TX73_003735at 795.702 kb on - strand, within TX73_003735at 795.704 kb on - strand, within TX73_003735at 795.798 kb on - strand, within TX73_003735at 795.805 kb on + strand, within TX73_003735at 795.813 kb on - strand, within TX73_003735at 795.817 kb on + strand, within TX73_003735at 795.817 kb on - strand, within TX73_003735at 795.821 kb on + strand, within TX73_003735at 795.825 kb on - strand, within TX73_003735at 795.826 kb on + strand, within TX73_003735at 795.832 kb on + strand, within TX73_003735at 795.858 kb on + strand, within TX73_003735at 795.873 kb on + strand, within TX73_003735at 795.893 kb on - strand, within TX73_003735at 795.903 kb on - strand, within TX73_003735at 795.919 kb on - strand, within TX73_003735at 795.931 kb on + strand, within TX73_003735at 795.934 kb on + strand, within TX73_003735at 795.941 kb on + strand, within TX73_003735at 796.012 kb on - strand, within TX73_003735at 796.012 kb on - strand, within TX73_003735at 796.021 kb on - strand, within TX73_003735at 796.100 kb on + strand, within TX73_003735at 796.107 kb on + strand, within TX73_003735at 796.140 kb on + strand, within TX73_003735at 796.157 kb on - strand, within TX73_003735at 796.195 kb on + strand, within TX73_003735at 796.203 kb on - strand, within TX73_003735at 796.203 kb on - strand, within TX73_003735at 796.226 kb on - strand, within TX73_003735at 796.238 kb on - strand, within TX73_003735at 796.254 kb on + strand, within TX73_003735at 796.295 kb on - strandat 796.297 kb on - strandat 796.299 kb on + strandat 796.299 kb on + strandat 796.307 kb on - strandat 796.307 kb on - strandat 796.315 kb on - strandat 796.322 kb on - strandat 796.345 kb on + strandat 796.347 kb on + strandat 796.353 kb on - strandat 796.355 kb on - strandat 796.409 kb on - strandat 796.543 kb on + strand, within TX73_003740at 796.557 kb on - strand, within TX73_003740

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Per-strain Table

Position Strand Gene LocusTag Fraction OAcsForEtOH (C); monoculture
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793,685 - +0.1
793,731 - -0.1
793,744 + +0.2
793,828 + TX73_003725 0.15 +0.0
793,835 + TX73_003725 0.16 -0.0
793,840 + TX73_003725 0.16 -2.0
793,841 - TX73_003725 0.16 +0.3
793,845 + TX73_003725 0.17 +1.6
793,848 - TX73_003725 0.17 -1.1
793,852 + TX73_003725 0.18 -0.7
793,853 - TX73_003725 0.18 -0.1
793,853 - TX73_003725 0.18 +0.6
793,853 - TX73_003725 0.18 +0.6
793,934 - TX73_003725 0.28 +0.2
793,956 + TX73_003725 0.31 +0.1
793,973 + TX73_003725 0.33 -0.4
793,975 - TX73_003725 0.33 +0.2
793,994 - TX73_003725 0.35 -0.2
793,999 - TX73_003725 0.36 +0.7
793,999 - TX73_003725 0.36 -0.0
794,001 - TX73_003725 0.36 +0.6
794,001 - TX73_003725 0.36 -0.5
794,008 + TX73_003725 0.37 -0.5
794,008 + TX73_003725 0.37 +0.8
794,008 + TX73_003725 0.37 -0.6
794,008 + TX73_003725 0.37 -0.1
794,011 - TX73_003725 0.37 +1.1
794,016 - TX73_003725 0.38 +1.2
794,031 - TX73_003725 0.40 +0.0
794,031 - TX73_003725 0.40 -0.4
794,103 - TX73_003725 0.49 +0.1
794,105 + TX73_003725 0.49 +0.6
794,154 - TX73_003725 0.55 -0.4
794,276 - TX73_003725 0.70 -0.2
794,309 + TX73_003725 0.74 -0.8
794,318 - TX73_003725 0.75 -0.2
794,318 - TX73_003725 0.75 +0.5
794,321 + TX73_003725 0.75 +0.6
794,354 - TX73_003725 0.79 +0.1
794,388 + TX73_003725 0.84 -0.1
794,402 - TX73_003725 0.85 -0.2
794,439 - +0.1
794,447 + -0.6
795,551 - +0.1
795,566 - -0.6
795,573 - -0.2
795,618 + -0.2
795,621 - +0.2
795,621 - -0.7
795,626 - -1.9
795,696 + TX73_003735 0.14 -0.3
795,696 + TX73_003735 0.14 -0.4
795,702 - TX73_003735 0.15 -1.3
795,704 - TX73_003735 0.15 -0.9
795,798 - TX73_003735 0.27 +0.0
795,805 + TX73_003735 0.28 -1.2
795,813 - TX73_003735 0.29 +0.6
795,817 + TX73_003735 0.30 -0.1
795,817 - TX73_003735 0.30 -0.4
795,821 + TX73_003735 0.30 -0.4
795,825 - TX73_003735 0.31 -0.1
795,826 + TX73_003735 0.31 -0.4
795,832 + TX73_003735 0.32 -1.7
795,858 + TX73_003735 0.35 -0.3
795,873 + TX73_003735 0.37 -0.5
795,893 - TX73_003735 0.39 +0.1
795,903 - TX73_003735 0.41 -0.2
795,919 - TX73_003735 0.43 -0.7
795,931 + TX73_003735 0.44 +0.2
795,934 + TX73_003735 0.45 +0.0
795,941 + TX73_003735 0.46 +1.4
796,012 - TX73_003735 0.55 +0.0
796,012 - TX73_003735 0.55 +0.2
796,021 - TX73_003735 0.56 -0.5
796,100 + TX73_003735 0.66 -1.1
796,107 + TX73_003735 0.67 -0.3
796,140 + TX73_003735 0.71 -0.5
796,157 - TX73_003735 0.73 -0.6
796,195 + TX73_003735 0.78 -0.5
796,203 - TX73_003735 0.79 -0.9
796,203 - TX73_003735 0.79 -0.1
796,226 - TX73_003735 0.82 -0.2
796,238 - TX73_003735 0.84 -1.2
796,254 + TX73_003735 0.86 -0.0
796,295 - +0.7
796,297 - -0.4
796,299 + +0.1
796,299 + +0.1
796,307 - -0.4
796,307 - -0.0
796,315 - -1.1
796,322 - +0.7
796,345 + +0.1
796,347 + -0.6
796,353 - -0.3
796,355 - +0.3
796,409 - -0.0
796,543 + TX73_003740 0.18 -0.0
796,557 - TX73_003740 0.19 +0.0

Or see this region's nucleotide sequence