Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000255

Experiment: OAcsForEtOH (C); monoculture

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000245 and TX73_000250 are separated by 8 nucleotidesTX73_000250 and TX73_000255 are separated by 116 nucleotidesTX73_000255 and TX73_000260 are separated by 206 nucleotides TX73_000245: TX73_000245 - LPS export ABC transporter periplasmic protein LptC, at 53,339 to 54,079 _000245 TX73_000250: TX73_000250 - LptA/OstA family protein, at 54,088 to 54,753 _000250 TX73_000255: TX73_000255 - LPS export ABC transporter ATP-binding protein, at 54,870 to 55,835 _000255 TX73_000260: TX73_000260 - RNA polymerase factor sigma-54, at 56,042 to 57,688 _000260 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.000 kb on - strand, within TX73_000245at 54.046 kb on + strandat 54.046 kb on + strandat 54.046 kb on + strandat 54.054 kb on - strandat 54.078 kb on + strandat 54.086 kb on - strandat 54.091 kb on + strandat 54.091 kb on - strandat 54.098 kb on - strandat 54.719 kb on - strandat 54.734 kb on + strandat 54.734 kb on + strandat 54.737 kb on - strandat 54.744 kb on + strandat 54.744 kb on + strandat 54.744 kb on + strandat 54.767 kb on + strandat 54.775 kb on - strandat 54.783 kb on + strandat 54.783 kb on + strandat 54.812 kb on - strandat 54.812 kb on - strandat 54.812 kb on - strandat 54.856 kb on + strandat 54.871 kb on + strandat 54.974 kb on + strand, within TX73_000255at 54.977 kb on + strand, within TX73_000255at 54.982 kb on - strand, within TX73_000255at 55.102 kb on - strand, within TX73_000255at 55.855 kb on - strandat 55.855 kb on - strandat 55.862 kb on - strandat 55.886 kb on + strandat 55.887 kb on + strandat 55.899 kb on + strandat 55.934 kb on + strandat 55.942 kb on + strandat 55.942 kb on - strandat 55.942 kb on - strandat 55.950 kb on - strandat 55.957 kb on - strandat 55.962 kb on - strandat 55.970 kb on - strandat 55.977 kb on + strandat 55.980 kb on + strandat 55.980 kb on - strandat 55.980 kb on - strandat 55.988 kb on - strandat 56.029 kb on + strandat 56.040 kb on + strandat 56.050 kb on + strandat 56.058 kb on - strandat 56.058 kb on - strandat 56.080 kb on + strandat 56.082 kb on + strandat 56.086 kb on + strandat 56.101 kb on + strandat 56.131 kb on + strandat 56.139 kb on - strandat 56.177 kb on + strandat 56.185 kb on + strandat 56.203 kb on - strandat 56.224 kb on - strand, within TX73_000260at 56.252 kb on - strand, within TX73_000260at 56.259 kb on - strand, within TX73_000260at 56.259 kb on - strand, within TX73_000260at 56.266 kb on + strand, within TX73_000260at 56.285 kb on + strand, within TX73_000260at 56.304 kb on + strand, within TX73_000260at 56.304 kb on + strand, within TX73_000260at 56.344 kb on + strand, within TX73_000260at 56.346 kb on - strand, within TX73_000260at 56.354 kb on + strand, within TX73_000260at 56.357 kb on - strand, within TX73_000260at 56.390 kb on - strand, within TX73_000260at 56.396 kb on + strand, within TX73_000260at 56.411 kb on - strand, within TX73_000260at 56.465 kb on + strand, within TX73_000260at 56.473 kb on - strand, within TX73_000260at 56.473 kb on - strand, within TX73_000260at 56.485 kb on + strand, within TX73_000260at 56.485 kb on + strand, within TX73_000260at 56.487 kb on + strand, within TX73_000260at 56.490 kb on + strand, within TX73_000260at 56.490 kb on + strand, within TX73_000260at 56.493 kb on - strand, within TX73_000260at 56.495 kb on + strand, within TX73_000260at 56.495 kb on - strand, within TX73_000260at 56.498 kb on - strand, within TX73_000260at 56.500 kb on - strand, within TX73_000260at 56.517 kb on - strand, within TX73_000260at 56.519 kb on + strand, within TX73_000260at 56.524 kb on + strand, within TX73_000260at 56.524 kb on + strand, within TX73_000260at 56.532 kb on - strand, within TX73_000260at 56.541 kb on + strand, within TX73_000260at 56.587 kb on + strand, within TX73_000260at 56.607 kb on + strand, within TX73_000260at 56.632 kb on + strand, within TX73_000260at 56.636 kb on - strand, within TX73_000260at 56.636 kb on - strand, within TX73_000260at 56.637 kb on + strand, within TX73_000260at 56.672 kb on - strand, within TX73_000260at 56.688 kb on + strand, within TX73_000260at 56.703 kb on + strand, within TX73_000260at 56.708 kb on + strand, within TX73_000260at 56.718 kb on + strand, within TX73_000260at 56.726 kb on + strand, within TX73_000260at 56.731 kb on + strand, within TX73_000260at 56.731 kb on + strand, within TX73_000260at 56.733 kb on + strand, within TX73_000260at 56.759 kb on + strand, within TX73_000260at 56.759 kb on + strand, within TX73_000260at 56.780 kb on - strand, within TX73_000260at 56.791 kb on - strand, within TX73_000260at 56.791 kb on - strand, within TX73_000260at 56.796 kb on + strand, within TX73_000260at 56.796 kb on + strand, within TX73_000260at 56.804 kb on - strand, within TX73_000260at 56.804 kb on - strand, within TX73_000260at 56.804 kb on - strand, within TX73_000260at 56.806 kb on - strand, within TX73_000260at 56.814 kb on - strand, within TX73_000260

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Per-strain Table

Position Strand Gene LocusTag Fraction OAcsForEtOH (C); monoculture
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54,000 - TX73_000245 0.89 -0.4
54,046 + -1.3
54,046 + -0.6
54,046 + -0.2
54,054 - -0.8
54,078 + -0.4
54,086 - -0.7
54,091 + -0.1
54,091 - +1.6
54,098 - +0.3
54,719 - -0.4
54,734 + -1.9
54,734 + -0.6
54,737 - -0.6
54,744 + +0.1
54,744 + +0.1
54,744 + -1.6
54,767 + +0.5
54,775 - +0.4
54,783 + -0.2
54,783 + -0.6
54,812 - -0.1
54,812 - -0.8
54,812 - -0.4
54,856 + +0.5
54,871 + -0.8
54,974 + TX73_000255 0.11 -0.3
54,977 + TX73_000255 0.11 -0.9
54,982 - TX73_000255 0.12 -0.3
55,102 - TX73_000255 0.24 +0.1
55,855 - -0.1
55,855 - +0.1
55,862 - -1.1
55,886 + -0.9
55,887 + -1.5
55,899 + +0.4
55,934 + -0.2
55,942 + -0.9
55,942 - -0.2
55,942 - -0.2
55,950 - +0.2
55,957 - +0.1
55,962 - -0.3
55,970 - -0.6
55,977 + -0.5
55,980 + +0.1
55,980 - +0.0
55,980 - -0.7
55,988 - +0.2
56,029 + -0.2
56,040 + +0.1
56,050 + +0.3
56,058 - +0.1
56,058 - +0.1
56,080 + +0.8
56,082 + +0.9
56,086 + +1.1
56,101 + +1.3
56,131 + +0.9
56,139 - +1.0
56,177 + +0.9
56,185 + +1.2
56,203 - +0.8
56,224 - TX73_000260 0.11 +0.8
56,252 - TX73_000260 0.13 +1.0
56,259 - TX73_000260 0.13 +1.1
56,259 - TX73_000260 0.13 +1.0
56,266 + TX73_000260 0.14 +0.8
56,285 + TX73_000260 0.15 +1.4
56,304 + TX73_000260 0.16 +0.7
56,304 + TX73_000260 0.16 +1.1
56,344 + TX73_000260 0.18 +1.1
56,346 - TX73_000260 0.18 +1.2
56,354 + TX73_000260 0.19 +1.2
56,357 - TX73_000260 0.19 +1.0
56,390 - TX73_000260 0.21 +1.1
56,396 + TX73_000260 0.21 +1.2
56,411 - TX73_000260 0.22 +0.7
56,465 + TX73_000260 0.26 +0.8
56,473 - TX73_000260 0.26 +0.6
56,473 - TX73_000260 0.26 +0.8
56,485 + TX73_000260 0.27 +1.2
56,485 + TX73_000260 0.27 +0.8
56,487 + TX73_000260 0.27 +0.7
56,490 + TX73_000260 0.27 +1.0
56,490 + TX73_000260 0.27 +0.8
56,493 - TX73_000260 0.27 +0.4
56,495 + TX73_000260 0.28 +1.0
56,495 - TX73_000260 0.28 +0.9
56,498 - TX73_000260 0.28 +1.0
56,500 - TX73_000260 0.28 +0.8
56,517 - TX73_000260 0.29 +1.2
56,519 + TX73_000260 0.29 +1.3
56,524 + TX73_000260 0.29 +0.9
56,524 + TX73_000260 0.29 +0.8
56,532 - TX73_000260 0.30 +0.8
56,541 + TX73_000260 0.30 +0.8
56,587 + TX73_000260 0.33 +1.1
56,607 + TX73_000260 0.34 +1.5
56,632 + TX73_000260 0.36 +0.8
56,636 - TX73_000260 0.36 +0.7
56,636 - TX73_000260 0.36 +1.0
56,637 + TX73_000260 0.36 +0.5
56,672 - TX73_000260 0.38 +1.3
56,688 + TX73_000260 0.39 +0.8
56,703 + TX73_000260 0.40 +1.1
56,708 + TX73_000260 0.40 +1.5
56,718 + TX73_000260 0.41 +1.1
56,726 + TX73_000260 0.42 +1.0
56,731 + TX73_000260 0.42 +1.0
56,731 + TX73_000260 0.42 +1.0
56,733 + TX73_000260 0.42 +0.8
56,759 + TX73_000260 0.44 +0.8
56,759 + TX73_000260 0.44 +1.0
56,780 - TX73_000260 0.45 +0.8
56,791 - TX73_000260 0.45 +1.0
56,791 - TX73_000260 0.45 +0.1
56,796 + TX73_000260 0.46 +0.6
56,796 + TX73_000260 0.46 +1.0
56,804 - TX73_000260 0.46 +0.8
56,804 - TX73_000260 0.46 -0.3
56,804 - TX73_000260 0.46 +0.9
56,806 - TX73_000260 0.46 +1.2
56,814 - TX73_000260 0.47 +0.7

Or see this region's nucleotide sequence