Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000650

Experiment: dpurH coculture with Glucose and NaCl and NH4Cl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000640 and TX73_000645 overlap by 4 nucleotidesTX73_000645 and TX73_000650 are separated by 64 nucleotidesTX73_000650 and TX73_000655 are separated by 22 nucleotidesTX73_000655 and TX73_000660 overlap by 4 nucleotides TX73_000640: TX73_000640 - phosphodiesterase, at 140,653 to 141,477 _000640 TX73_000645: TX73_000645 - phosphodiesterase, at 141,474 to 142,298 _000645 TX73_000650: TX73_000650 - ABC transporter substrate-binding protein, at 142,363 to 143,643 _000650 TX73_000655: TX73_000655 - carbohydrate ABC transporter permease, at 143,666 to 144,502 _000655 TX73_000660: TX73_000660 - sugar ABC transporter permease, at 144,499 to 145,443 _000660 Position (kb) 142 143 144Strain fitness (log2 ratio) -1 0 1at 141.371 kb on + strand, within TX73_000640at 141.379 kb on - strand, within TX73_000640at 141.379 kb on - strand, within TX73_000640at 141.392 kb on + strand, within TX73_000640at 141.395 kb on - strandat 141.407 kb on + strandat 141.503 kb on - strandat 141.598 kb on + strand, within TX73_000645at 141.646 kb on - strand, within TX73_000645at 141.695 kb on - strand, within TX73_000645at 141.696 kb on + strand, within TX73_000645at 141.749 kb on - strand, within TX73_000645at 141.907 kb on - strand, within TX73_000645at 141.912 kb on - strand, within TX73_000645at 141.925 kb on - strand, within TX73_000645at 141.994 kb on + strand, within TX73_000645at 141.994 kb on + strand, within TX73_000645at 141.994 kb on + strand, within TX73_000645at 141.994 kb on + strand, within TX73_000645at 141.994 kb on + strand, within TX73_000645at 142.004 kb on + strand, within TX73_000645at 142.103 kb on + strand, within TX73_000645at 142.180 kb on - strand, within TX73_000645at 142.196 kb on + strand, within TX73_000645at 142.322 kb on + strandat 142.382 kb on + strandat 142.395 kb on + strandat 142.415 kb on + strandat 142.460 kb on - strandat 142.498 kb on + strand, within TX73_000650at 142.616 kb on + strand, within TX73_000650at 142.624 kb on - strand, within TX73_000650at 142.674 kb on - strand, within TX73_000650at 142.676 kb on + strand, within TX73_000650at 142.684 kb on - strand, within TX73_000650at 142.684 kb on - strand, within TX73_000650at 142.723 kb on - strand, within TX73_000650at 142.792 kb on + strand, within TX73_000650at 142.939 kb on + strand, within TX73_000650at 142.971 kb on + strand, within TX73_000650at 143.143 kb on + strand, within TX73_000650at 143.174 kb on + strand, within TX73_000650at 143.337 kb on + strand, within TX73_000650at 143.374 kb on + strand, within TX73_000650at 143.382 kb on - strand, within TX73_000650at 143.382 kb on - strand, within TX73_000650at 143.411 kb on - strand, within TX73_000650at 143.425 kb on - strand, within TX73_000650at 143.430 kb on + strand, within TX73_000650at 143.430 kb on - strand, within TX73_000650at 143.438 kb on - strand, within TX73_000650at 143.471 kb on - strand, within TX73_000650at 143.541 kb on + strandat 143.573 kb on - strandat 143.598 kb on - strandat 143.660 kb on - strandat 143.683 kb on + strandat 143.826 kb on + strand, within TX73_000655at 143.826 kb on + strand, within TX73_000655at 144.017 kb on - strand, within TX73_000655at 144.044 kb on - strand, within TX73_000655at 144.189 kb on + strand, within TX73_000655at 144.243 kb on - strand, within TX73_000655at 144.332 kb on - strand, within TX73_000655at 144.369 kb on + strand, within TX73_000655at 144.377 kb on - strand, within TX73_000655at 144.396 kb on - strand, within TX73_000655at 144.408 kb on + strand, within TX73_000655at 144.428 kb on + strandat 144.446 kb on + strandat 144.484 kb on - strandat 144.565 kb on + strandat 144.576 kb on - strandat 144.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dpurH coculture with Glucose and NaCl and NH4Cl
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141,371 + TX73_000640 0.87 -0.4
141,379 - TX73_000640 0.88 -1.3
141,379 - TX73_000640 0.88 +0.8
141,392 + TX73_000640 0.90 +0.5
141,395 - +0.1
141,407 + -0.1
141,503 - -0.1
141,598 + TX73_000645 0.15 +0.1
141,646 - TX73_000645 0.21 -0.1
141,695 - TX73_000645 0.27 -0.1
141,696 + TX73_000645 0.27 -0.9
141,749 - TX73_000645 0.33 -0.4
141,907 - TX73_000645 0.52 +0.5
141,912 - TX73_000645 0.53 -0.9
141,925 - TX73_000645 0.55 +0.4
141,994 + TX73_000645 0.63 -0.6
141,994 + TX73_000645 0.63 +0.5
141,994 + TX73_000645 0.63 +0.1
141,994 + TX73_000645 0.63 +0.9
141,994 + TX73_000645 0.63 -0.2
142,004 + TX73_000645 0.64 -0.0
142,103 + TX73_000645 0.76 +1.0
142,180 - TX73_000645 0.86 +0.4
142,196 + TX73_000645 0.88 -0.2
142,322 + -0.3
142,382 + -1.4
142,395 + -0.3
142,415 + -0.0
142,460 - +0.1
142,498 + TX73_000650 0.11 -0.2
142,616 + TX73_000650 0.20 +1.6
142,624 - TX73_000650 0.20 +0.0
142,674 - TX73_000650 0.24 +0.1
142,676 + TX73_000650 0.24 +0.5
142,684 - TX73_000650 0.25 -0.5
142,684 - TX73_000650 0.25 +1.4
142,723 - TX73_000650 0.28 -1.0
142,792 + TX73_000650 0.33 +1.1
142,939 + TX73_000650 0.45 -0.0
142,971 + TX73_000650 0.47 +0.1
143,143 + TX73_000650 0.61 +0.0
143,174 + TX73_000650 0.63 +0.8
143,337 + TX73_000650 0.76 +0.4
143,374 + TX73_000650 0.79 +0.8
143,382 - TX73_000650 0.80 -0.1
143,382 - TX73_000650 0.80 +0.3
143,411 - TX73_000650 0.82 +0.9
143,425 - TX73_000650 0.83 -0.6
143,430 + TX73_000650 0.83 -0.5
143,430 - TX73_000650 0.83 +0.5
143,438 - TX73_000650 0.84 +1.2
143,471 - TX73_000650 0.86 -0.5
143,541 + -0.6
143,573 - -0.7
143,598 - -1.5
143,660 - -0.2
143,683 + -0.4
143,826 + TX73_000655 0.19 +0.1
143,826 + TX73_000655 0.19 +0.1
144,017 - TX73_000655 0.42 +0.1
144,044 - TX73_000655 0.45 +0.9
144,189 + TX73_000655 0.62 +0.1
144,243 - TX73_000655 0.69 -0.4
144,332 - TX73_000655 0.80 -0.4
144,369 + TX73_000655 0.84 -0.3
144,377 - TX73_000655 0.85 -0.4
144,396 - TX73_000655 0.87 -0.4
144,408 + TX73_000655 0.89 +1.0
144,428 + -1.0
144,446 + -0.0
144,484 - -0.1
144,565 + +1.3
144,576 - +0.1
144,590 - +0.5

Or see this region's nucleotide sequence